genome.fa.s19.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  154  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46249618--46249666	22	2.3	22	85	3	64	28	4	6	61	1.38
46249639--46249718	26	3.1	25	75	10	72	28	6	7	57	1.51
46251244--46251291	25	1.9	25	86	0	69	33	14	16	35	1.89
46256274--46256328	25	2.2	26	78	21	64	32	3	0	63	1.12
46256283--46256359	24	3.1	23	72	22	66	32	1	2	63	1.16
46256283--46256359	25	3.1	24	75	17	77	32	1	2	63	1.16
46262386--46262485	19	5.3	19	69	15	64	60	3	5	32	1.34
46262327--46262621	9	31.4	9	66	18	97	61	3	2	32	1.26
46262354--46262492	75	1.9	74	83	5	185	63	2	3	30	1.26
46262486--46262534	22	2.3	21	82	3	62	65	6	0	28	1.16
46262471--46262540	29	2.4	27	77	15	68	64	4	0	31	1.13
46262578--46262621	17	2.5	17	92	3	70	70	2	0	27	0.99
46263929--46263978	17	3.1	16	83	11	66	62	2	0	36	1.07
46263928--46263976	8	5.8	9	79	16	52	65	2	0	32	1.04
46263989--46264059	29	2.6	26	76	12	70	63	4	1	30	1.22
46263984--46264059	37	2.1	37	82	9	93	63	3	1	31	1.21
46271958--46272054	10	10.4	9	69	18	56	60	4	3	31	1.31
46272788--46272924	9	14.2	9	67	22	57	32	2	5	59	1.33
46272881--46272941	19	3.4	19	68	20	51	31	0	3	65	1.09
46273822--46273955	39	3.4	39	78	4	144	38	17	20	23	1.94
46274999--46275112	41	2.8	41	80	6	106	25	14	27	32	1.95
46275037--46275133	41	2.4	41	82	3	106	22	16	28	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46275946--46275998	14	3.7	14	80	5	61	7	0	41	50	1.30
46279190--46279240	21	2.4	21	90	0	75	35	17	45	1	1.60
46279151--46279326	87	2.0	87	87	0	253	43	18	27	10	1.83
46279685--46279828	43	3.3	43	89	0	207	31	19	24	24	1.98
46279685--46279847	86	1.9	86	83	2	211	31	20	24	23	1.98
46279840--46279910	30	2.4	30	92	0	115	30	23	21	23	1.99
46279968--46280007	21	1.9	21	90	10	64	52	22	15	10	1.71
46280498--46280608	21	5.3	21	75	4	89	46	16	21	15	1.83
46280505--46280634	42	3.1	41	80	4	152	43	16	21	17	1.87
46283949--46283999	21	2.4	21	90	0	75	35	17	45	1	1.60
46283910--46284085	87	2.0	87	87	0	253	43	18	27	10	1.83
46284433--46284671	43	5.5	43	83	2	282	28	16	28	26	1.97
46284657--46284707	26	2.0	25	92	3	84	41	13	23	21	1.89
46287729--46287835	56	1.9	55	96	1	196	25	11	17	45	1.81
46289654--46289687	12	2.7	13	90	4	52	73	14	11	0	1.10
46290518--46290557	20	2.1	19	85	4	53	62	7	7	22	1.47
46290580--46290626	9	5.2	9	85	7	60	63	2	0	34	1.06
46290585--46290626	19	2.3	18	84	8	59	66	2	0	30	1.04
46290657--46291477	77	10.7	78	84	4	929	29	16	19	34	1.94
46290665--46291475	232	3.5	227	83	5	964	29	16	19	34	1.94
46290657--46291477	155	5.3	153	83	4	958	29	16	19	34	1.94
46291644--46291781	30	4.7	29	83	6	152	35	23	2	38	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46292122--46292153	3	10.7	3	100	0	64	68	0	31	0	0.90
46292819--46292873	18	3.1	17	80	12	58	34	7	10	47	1.66
46292819--46292867	17	2.9	18	85	8	59	30	8	12	48	1.69
46301137--46301213	25	3.1	25	71	1	66	37	20	23	18	1.94
46301336--46301385	26	2.0	25	88	4	73	38	22	22	18	1.94
46302386--46302426	17	2.4	18	80	8	50	26	12	0	60	1.31
46302989--46303034	20	2.2	21	88	3	67	34	2	0	63	1.07
46316244--46316284	21	2.0	21	85	9	57	24	19	9	46	1.80
46318323--46318368	24	1.9	24	82	8	58	52	8	0	39	1.33
46318435--46318587	80	1.9	79	90	1	243	41	13	4	40	1.64
46329658--46329708	20	2.6	20	84	3	59	60	1	0	37	1.08
46329653--46329709	9	6.0	10	73	17	50	56	1	0	42	1.10
46337763--46337824	27	2.3	27	83	5	81	59	0	3	37	1.13
46338577--46338618	13	3.2	13	86	6	50	83	4	2	9	0.88
46338577--46338618	18	2.3	18	80	11	50	83	4	2	9	0.88
46339666--46341021	100	13.6	100	87	2	1021	25	19	21	32	1.97
46339644--46339954	50	6.2	50	68	4	162	21	21	26	31	1.98
46339946--46341033	249	4.4	248	83	4	1257	27	18	20	33	1.96
46339946--46341033	50	21.8	49	80	6	1165	27	18	20	33	1.96
46341038--46341153	45	2.6	45	79	6	137	19	22	23	34	1.97
46341118--46341438	88	3.6	88	95	0	527	23	24	24	27	2.00
46341043--46341434	44	8.9	44	67	13	178	23	24	23	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46343872--46343905	16	2.1	16	88	5	50	2	2	14	79	0.97
46346020--46346082	31	2.0	31	93	0	108	33	22	25	19	1.97
46349784--46349818	17	2.1	17	100	0	70	17	22	22	37	1.94
46350948--46350996	19	2.5	19	87	9	64	40	0	0	59	0.98
46350960--46351000	19	2.2	19	91	8	66	36	0	0	63	0.95
46361510--46361543	17	1.9	18	88	5	52	35	2	0	61	1.11
46373265--46373307	16	2.7	16	82	7	52	37	16	2	44	1.60
46375170--46375280	37	3.0	37	91	0	177	31	16	16	36	1.91
46376201--46376274	38	1.9	38	91	0	121	41	21	9	27	1.84
46377253--46377290	20	1.9	20	94	0	67	31	7	28	31	1.86
46377536--46377575	20	2.0	20	85	9	55	30	2	0	67	1.04
46390987--46391228	130	1.9	130	91	0	403	32	22	16	28	1.95
46400017--46400169	80	1.9	79	90	1	243	40	4	13	41	1.64
46403132--46403257	43	2.9	42	81	12	148	19	18	30	32	1.95
46403909--46403943	15	2.3	15	90	9	54	25	0	22	51	1.48
46404197--46404799	93	6.5	93	94	1	1003	32	11	15	40	1.83
46404197--46404797	280	2.1	279	96	0	1103	32	11	15	40	1.83
46404197--46404799	47	12.9	47	94	1	1034	32	11	15	40	1.83
46405976--46406026	21	2.4	21	93	0	84	33	29	3	33	1.76
46406322--46406371	24	2.1	24	100	0	100	38	8	6	48	1.57
46409745--46409779	18	1.9	18	100	0	70	28	25	28	17	1.97
46413528--46413611	29	2.8	30	81	5	89	35	14	14	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46413528--46413602	29	2.5	31	82	6	91	34	14	13	37	1.85
46417349--46417468	61	2.0	60	88	6	181	34	13	23	29	1.93
46420258--46420310	18	2.9	18	88	2	70	66	0	1	32	1.03
46420276--46420321	16	2.8	16	83	9	58	69	0	0	30	0.89
46420990--46421022	16	2.0	17	88	5	50	42	0	12	45	1.41
46424401--46424801	43	9.4	43	87	1	502	26	19	29	25	1.98
46424744--46424833	42	2.1	42	81	4	99	27	24	17	30	1.97
46427858--46427891	3	11.3	3	100	0	68	32	0	0	67	0.91
46433871--46433919	18	2.7	18	87	0	71	55	0	10	34	1.34
46434245--46434311	25	2.7	25	86	4	91	40	13	16	29	1.87
46444792--46445429	319	2.0	319	99	0	1258	38	8	21	31	1.84
46447762--46447795	17	1.9	18	94	5	61	11	23	47	17	1.81
46451291--46451357	31	2.2	31	94	0	116	41	10	26	20	1.85
46455287--46455324	18	2.1	19	90	5	60	52	5	21	21	1.66
46463666--46463695	2	15.0	2	100	0	60	50	0	50	0	1.00
46466613--46466797	44	4.2	44	65	8	124	24	24	21	29	1.99
46466591--46466896	132	2.3	132	93	0	513	23	25	19	30	1.98
46466877--46467409	217	2.5	217	93	0	895	26	22	21	30	1.99
46466908--46467409	44	11.6	43	72	13	323	26	22	21	29	1.99
46481348--46481414	31	2.2	31	94	0	116	41	10	26	20	1.85
46485344--46485410	31	2.2	31	94	0	116	41	10	26	20	1.85
46499569--46499598	6	5.0	6	100	0	60	33	16	16	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46513387--46513516	42	3.1	42	78	4	154	17	21	16	43	1.87
46513387--46513523	21	6.5	21	72	3	96	16	21	16	44	1.86
46514014--46514053	21	1.9	21	90	10	64	10	15	22	52	1.71
46514111--46514181	30	2.4	30	92	0	115	23	21	23	30	1.99
46514174--46514336	43	3.8	43	87	1	202	23	24	20	31	1.98
46514193--46514397	43	4.7	43	83	4	207	23	22	18	35	1.96
46514163--46514347	86	2.2	86	80	5	221	25	23	18	32	1.97
46516680--46517108	9	48.2	9	72	14	268	34	1	17	47	1.58
46516706--46516870	16	10.5	16	74	17	87	30	1	21	46	1.61
46516680--46516892	25	8.5	25	76	12	138	30	1	20	47	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205