genome.fa.s19.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  46  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13574209--13574475	47	5.7	46	73	9	175	28	19	28	23	1.98
13574209--13574423	93	2.3	91	81	6	229	28	19	28	23	1.98
13581265--13581436	93	1.8	93	88	2	265	27	29	20	21	1.98
13581257--13581431	46	3.8	45	75	10	174	28	29	20	21	1.98
13583192--13583290	49	2.0	49	84	0	126	26	16	33	24	1.96
13584103--13584607	221	2.3	221	97	0	967	26	14	28	30	1.95
13587460--13587508	20	2.5	20	93	0	80	48	22	12	16	1.79
13588338--13588504	47	3.7	44	76	10	131	28	17	31	22	1.96
13590180--13590229	25	2.0	25	96	0	91	52	2	4	42	1.31
13596480--13596555	26	2.9	26	81	11	84	32	13	10	43	1.78
13598526--13598667	47	3.0	47	90	5	225	28	11	14	45	1.80
13599457--13599632	43	4.0	43	78	6	185	26	19	27	25	1.99
13599471--13599631	87	1.8	86	90	5	261	26	20	28	24	1.99
13599478--13599673	43	4.6	41	76	11	112	26	19	29	25	1.98
13601976--13602002	13	2.1	13	100	0	54	48	0	14	37	1.45
13611901--13612048	43	3.5	43	70	14	110	29	25	18	26	1.98
13614067--13614328	39	6.7	40	88	7	337	24	27	22	25	2.00
13621070--13621207	70	2.0	70	92	0	231	31	14	15	38	1.88
13622129--13622312	79	2.3	81	82	11	222	25	27	22	25	2.00
13622129--13622312	40	4.6	41	83	12	199	25	27	22	25	2.00
13622381--13622526	73	2.0	73	97	0	274	40	21	12	26	1.88
13622763--13622787	13	1.9	13	100	0	50	0	8	4	88	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13622964--13622988	13	1.9	13	100	0	50	0	8	4	88	0.64
13622691--13623093	201	2.0	202	99	0	799	25	19	15	39	1.91
13624986--13625025	21	2.0	20	85	5	53	45	25	0	30	1.54
13628292--13628317	13	2.0	13	100	0	52	15	38	30	15	1.88
13637173--13637380	104	2.0	104	99	0	407	33	19	10	36	1.86
13637391--13637587	99	2.0	99	96	0	367	32	24	16	25	1.96
13638741--13638879	67	2.1	68	84	9	178	18	27	21	32	1.97
13652646--13652723	27	2.8	28	82	3	95	30	24	11	33	1.91
13658564--13658742	52	3.5	52	84	6	208	28	13	30	27	1.95
13667035--13667199	43	3.9	42	73	15	151	23	16	26	33	1.96
13672848--13672878	15	2.1	15	93	0	53	19	0	25	54	1.44
13677356--13677440	41	2.1	41	97	0	161	42	4	27	25	1.75
13680670--13680803	48	2.8	50	80	6	168	21	16	25	36	1.94
13688794--13688849	29	2.1	28	81	18	66	58	0	37	3	1.15
13692780--13692836	26	2.2	26	80	3	60	28	19	19	33	1.96
13707196--13707420	40	5.6	40	83	4	256	24	27	23	25	2.00
13707160--13707420	80	3.3	79	79	6	260	24	26	22	25	2.00
13717730--13717995	46	5.7	46	79	11	301	22	20	27	29	1.98
13717727--13717990	93	2.8	93	97	0	483	22	20	28	28	1.98
13720129--13720171	21	2.0	21	82	8	52	0	18	16	65	1.28
13725813--13725845	16	1.9	18	88	11	52	51	15	9	24	1.72
13726423--13726610	38	4.9	38	82	4	200	29	26	21	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13726423--13726610	76	2.5	77	82	6	231	29	26	21	22	1.99
13730460--13730582	43	2.9	40	75	11	104	34	22	17	26	1.96
13730559--13730673	44	2.6	44	86	1	169	31	24	17	26	1.97
13730957--13730996	14	2.5	17	76	19	50	35	20	2	42	1.65
13749786--13749842	30	1.9	30	85	7	80	42	7	22	28	1.80
13750436--13750681	49	4.9	50	82	2	289	25	18	26	29	1.98
13750486--13750668	101	1.8	99	88	2	276	25	19	26	28	1.98
13754294--13754337	21	2.1	21	83	8	54	43	11	9	36	1.72
13756830--13756862	15	2.2	16	89	10	52	27	0	21	51	1.48
13757662--13757691	15	2.0	15	93	0	51	36	0	13	50	1.42
13760316--13760431	42	2.8	42	85	0	133	30	25	17	26	1.97
13760446--13761308	54	16.0	54	99	0	1708	27	24	16	31	1.97
13761256--13761571	96	3.4	92	77	10	327	27	26	18	27	1.98
13761256--13761577	48	6.8	48	76	9	270	27	27	18	27	1.98
13775902--13776004	43	2.4	43	98	0	197	22	16	34	26	1.95
13775986--13776059	29	2.6	29	89	4	105	25	16	32	25	1.96
13776370--13776565	40	4.9	40	81	5	184	26	23	27	23	2.00
13776370--13776566	80	2.5	81	80	7	206	25	23	26	23	2.00
13776728--13776779	25	2.1	25	85	7	70	34	7	26	30	1.85
13779602--13779859	40	6.5	40	93	2	396	22	23	29	25	1.99
13788662--13788701	20	2.0	20	95	0	71	40	17	32	10	1.83
13794691--13794722	13	2.5	13	94	0	55	59	6	9	25	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13800362--13800496	66	2.1	65	80	5	148	17	25	29	28	1.97
13802161--13802216	20	2.8	20	83	0	67	8	30	19	41	1.82
13819076--13819154	37	2.1	37	83	4	97	27	30	17	24	1.97
13819273--13819579	47	6.5	47	93	0	461	28	30	9	30	1.88
13819510--13819632	63	2.0	63	98	0	237	33	30	6	30	1.83
13819557--13819595	16	2.4	16	95	0	69	41	30	0	28	1.57
13822087--13822224	55	2.5	55	78	2	134	29	30	23	16	1.96
13822748--13822792	23	2.0	23	81	0	54	26	28	6	37	1.82
13825297--13825434	55	2.5	55	78	2	134	29	30	23	16	1.96
13825958--13826002	23	2.0	23	81	0	54	26	28	6	37	1.82
13831833--13831908	23	3.3	23	80	14	77	25	23	17	34	1.96
13831890--13831966	23	3.4	23	80	1	75	18	31	19	31	1.96
13831833--13831922	46	2.0	46	80	8	103	23	25	18	32	1.97
13835169--13835240	20	3.7	20	80	9	78	40	1	5	52	1.33
13839141--13839189	14	3.5	13	88	8	62	51	8	0	40	1.32
13846347--13846371	10	2.5	10	100	0	50	20	32	0	48	1.50
13851463--13851679	46	4.7	46	77	11	176	27	19	28	24	1.98
13858772--13858830	30	2.0	30	86	0	82	32	11	25	30	1.92
13859218--13859319	46	2.2	47	81	12	120	28	15	30	25	1.96
13868220--13868324	53	2.0	53	90	0	165	28	19	25	26	1.98
13871123--13871183	30	2.0	30	83	0	77	31	22	8	37	1.84
13873404--13873750	39	8.9	39	85	1	453	20	24	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13879492--13879519	14	2.0	14	100	0	56	35	7	14	42	1.73
13895947--13896174	40	5.7	40	86	5	318	28	27	20	24	1.99
13901258--13901435	27	6.6	27	82	3	187	29	28	15	26	1.96
13901279--13901434	82	1.9	81	86	3	224	28	28	16	26	1.96
13907748--13907918	40	4.3	40	89	1	218	26	28	18	25	1.98
13917568--13917611	14	3.1	14	86	3	61	61	0	0	38	0.96
13920811--13920857	25	2.0	25	84	12	64	27	6	4	61	1.39
13920850--13920915	34	1.9	34	96	3	123	19	7	1	71	1.18
13943524--13943617	24	3.9	24	94	0	143	34	31	14	19	1.92
13943484--13943600	48	2.4	48	84	0	135	36	28	11	23	1.89
13943484--13943617	72	1.9	72	83	0	178	34	29	13	23	1.93
13944634--13944682	19	2.7	19	78	12	59	18	14	0	67	1.23
13955059--13955083	13	1.9	13	100	0	50	8	32	36	24	1.84
13961391--13961468	41	1.9	40	97	0	138	15	28	24	30	1.95
13963362--13963440	37	2.1	37	86	4	106	24	30	18	26	1.98
13963559--13964032	49	9.8	49	96	1	843	29	29	8	32	1.86
13968018--13968212	50	3.9	50	87	2	275	28	17	30	23	1.97
13981629--13981682	26	2.1	26	86	10	76	20	14	1	62	1.40
13987419--13987458	20	2.0	20	95	0	71	55	22	10	12	1.67
13988927--13988961	17	1.9	19	88	11	56	40	2	22	34	1.69
13992203--13992473	48	5.6	48	76	6	210	27	19	28	24	1.99
13992200--13992474	96	2.8	96	82	6	306	26	20	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13997767--13997817	21	2.4	21	75	21	52	17	7	3	70	1.27
13997818--13997851	8	4.2	8	96	0	59	58	0	0	41	0.98
13999782--14000015	116	2.0	116	100	0	468	34	19	10	36	1.85
14001039--14001204	46	3.6	45	77	9	183	30	30	18	21	1.97
14001047--14001218	93	1.8	93	90	2	274	28	29	19	22	1.98
14003603--14003691	30	3.0	30	80	8	101	57	15	16	10	1.65
14003603--14003682	15	5.4	15	80	7	92	58	13	17	10	1.62
14003614--14003691	15	5.2	15	78	9	79	56	15	16	11	1.67
14006445--14006959	281	1.8	281	97	0	985	30	23	15	30	1.96
14006941--14007842	93	9.7	93	99	0	1759	30	31	16	22	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205