genome.fa.s19.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  37  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11033196--11033236	8	4.9	8	88	11	64	2	9	2	85	0.78
11033196--11033236	18	2.4	16	92	8	64	2	9	2	85	0.78
11034182--11034256	23	3.2	22	75	11	60	80	5	5	9	1.03
11034184--11034249	29	2.3	28	82	12	80	78	6	4	10	1.06
11034181--11034237	17	3.5	15	75	17	51	80	5	3	10	0.98
11034213--11034256	19	2.3	19	88	11	63	79	4	9	6	1.04
11034179--11034251	33	2.2	33	80	9	87	78	6	4	10	1.08
11034181--11034266	20	4.7	19	75	16	76	77	6	4	10	1.10
11035447--11035532	9	10.2	8	67	18	50	74	1	5	18	1.08
11035468--11035535	22	3.4	19	77	18	66	72	0	5	22	1.06
11035448--11035529	26	3.2	24	80	11	83	74	1	6	18	1.09
11035486--11035538	13	4.2	13	88	11	74	71	0	3	24	1.02
11043559--11043591	16	2.1	16	94	0	57	54	12	21	12	1.69
11045116--11045197	29	2.9	28	73	23	73	59	0	2	37	1.11
11045190--11045255	19	3.4	19	75	4	60	60	3	7	28	1.39
11045488--11045518	16	1.9	16	100	0	62	25	6	0	67	1.14
11045467--11045537	35	2.0	35	83	2	88	36	2	1	59	1.21
11045531--11045585	28	2.0	28	86	6	78	36	0	0	63	0.95
11045555--11045601	18	2.5	19	86	6	69	34	0	0	65	0.93
11053282--11053318	18	2.1	18	90	10	58	54	0	0	45	1.00
11053282--11053313	9	3.4	10	87	12	50	46	0	0	53	1.00
11053282--11053319	19	2.1	18	90	5	58	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11053428--11053479	21	2.5	21	93	0	86	30	36	9	23	1.87
11058398--11058440	19	2.3	19	88	8	61	25	0	0	74	0.82
11058740--11058795	7	8.0	7	100	0	112	57	0	0	42	0.99
11058792--11058816	7	3.6	7	100	0	50	16	0	0	84	0.63
11059490--11059542	16	3.5	15	80	16	56	43	1	0	54	1.11
11059492--11059601	7	15.9	7	68	15	50	40	1	0	56	1.16
11059513--11059563	24	2.2	22	86	6	66	37	1	1	58	1.20
11071556--11071623	32	2.1	32	83	0	82	30	1	0	67	0.99
11074890--11074917	9	3.1	9	100	0	56	57	10	0	32	1.33
11074860--11075001	68	2.1	66	94	2	248	45	8	4	41	1.56
11074990--11075031	16	2.6	16	88	0	57	42	4	2	50	1.36
11075011--11075059	22	2.2	22	81	0	62	44	0	2	53	1.12
11078169--11078226	23	2.5	22	76	17	64	44	5	5	44	1.48
11084437--11084482	21	2.2	21	84	0	56	56	21	4	17	1.58
11085714--11085744	16	1.9	16	93	0	53	35	22	0	41	1.54
11088786--11088820	16	2.2	16	89	0	52	60	22	0	17	1.37
11088776--11088818	22	1.9	22	85	4	59	58	23	0	18	1.40
11088776--11088828	25	2.2	24	80	12	56	62	18	0	18	1.33
11093460--11093539	38	2.1	39	85	2	108	23	0	22	53	1.46
11093482--11093582	41	2.5	40	81	12	127	22	0	20	56	1.42
11093585--11093673	29	3.1	29	79	9	92	42	4	20	32	1.72
11100206--11100256	18	2.7	18	84	6	66	43	1	3	50	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11101426--11101464	18	2.2	17	95	4	69	28	0	5	66	1.12
11106191--11106431	50	4.7	49	72	12	150	22	27	21	27	1.99
11116780--11116840	6	10.7	6	78	15	58	45	0	0	54	1.00
11116834--11116865	7	4.6	7	92	0	55	53	0	0	46	1.00
11117108--11117210	29	3.5	29	75	10	102	38	13	19	28	1.90
11117135--11117239	31	3.5	30	74	7	106	41	15	19	23	1.89
11117128--11117220	28	3.2	27	72	18	80	46	12	17	23	1.82
11117108--11117239	59	2.2	60	86	8	189	40	13	19	26	1.89
11122877--11122919	18	2.4	18	96	0	77	37	20	11	30	1.89
11127334--11127358	13	1.9	13	100	0	50	40	16	40	4	1.67
11129904--11129929	4	6.5	4	100	0	52	76	0	0	23	0.78
11142312--11142877	44	12.9	44	91	0	819	29	19	23	27	1.99
11143393--11143430	20	1.9	19	89	5	58	5	2	10	81	0.94
11152723--11152780	29	2.0	30	86	3	82	36	1	5	56	1.32
11161416--11161453	19	2.0	19	94	0	67	39	5	13	42	1.66
11161477--11161556	41	2.0	41	87	4	119	37	5	10	47	1.59
11165244--11165282	19	2.1	19	95	0	69	38	5	12	43	1.65
11174797--11174829	13	2.5	13	90	9	50	21	6	0	72	1.05
11183291--11183499	92	2.3	91	86	5	278	45	3	3	46	1.39
11183427--11183474	26	1.9	25	84	16	64	45	0	2	52	1.12
11183504--11183812	54	5.2	56	67	22	161	43	2	4	49	1.36
11183553--11183760	66	3.3	62	69	21	175	41	2	6	48	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11183515--11183801	120	2.4	120	92	2	479	43	2	4	49	1.37
11183756--11183790	18	2.0	17	88	5	52	45	0	0	54	0.99
11183769--11183810	16	2.7	15	85	14	50	50	2	0	47	1.14
11183924--11183964	15	2.7	15	88	3	55	46	0	2	51	1.14
11183751--11184057	154	2.0	155	93	0	526	47	7	2	42	1.46
11184180--11184215	16	2.2	16	100	0	72	38	36	0	25	1.56
11185525--11185576	25	2.1	25	96	0	95	46	9	3	40	1.55
11186984--11187020	14	2.6	14	100	0	74	16	5	59	18	1.55
11187505--11187531	5	5.4	5	100	0	54	0	44	55	0	0.99
11189099--11189305	114	1.8	113	89	1	324	28	20	23	27	1.99
11189211--11189383	73	2.4	73	89	2	260	29	20	23	26	1.99
11189284--11189498	115	1.9	112	89	5	333	26	22	25	25	2.00
11189099--11189685	187	3.1	186	88	3	867	27	22	24	25	2.00
11189397--11189571	73	2.4	74	89	0	262	26	22	24	26	2.00
11189471--11189929	229	2.0	230	90	2	733	26	21	26	25	1.99
11189471--11189933	114	4.0	114	88	2	703	26	21	26	25	1.99
11190160--11190229	15	4.8	15	75	15	58	17	0	34	48	1.47
11190170--11190229	8	8.3	7	83	10	68	16	0	36	46	1.47
11190486--11190526	21	2.0	20	85	4	55	19	0	41	39	1.52
11190532--11190578	22	2.1	22	84	0	58	29	0	34	36	1.58
11193675--11193721	4	11.8	4	100	0	94	25	0	23	51	1.49
11194225--11194258	7	5.0	7	92	7	61	44	11	0	44	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11194433--11194538	43	2.5	43	96	0	194	23	17	29	29	1.97
11196532--11196566	10	3.5	10	96	0	61	31	14	28	25	1.95
11198415--11198461	4	11.8	4	100	0	94	25	0	23	51	1.49
11198965--11198998	7	5.0	7	92	7	61	44	11	0	44	1.40
11199171--11199360	43	4.4	43	90	2	310	21	18	28	32	1.96
11199171--11199360	86	2.2	86	96	1	346	21	18	28	32	1.96
11205979--11206031	20	2.7	20	85	5	72	33	16	15	33	1.90
11207582--11207613	15	2.1	15	94	0	55	28	6	31	34	1.82
11209901--11209926	12	2.2	12	100	0	52	7	30	38	23	1.83
11219650--11219715	34	1.9	34	87	0	96	28	4	21	45	1.71
11223187--11223258	5	14.8	5	74	21	64	38	1	4	55	1.28
11223216--11223258	19	2.3	19	92	8	70	41	2	0	55	1.12
11223268--11223301	17	2.0	17	94	0	59	79	0	17	2	0.86
11223268--11223301	9	3.9	9	84	7	52	79	0	17	2	0.86
11223871--11223928	30	1.9	30	89	0	89	41	3	24	31	1.71
11224268--11224353	46	1.9	44	90	4	136	33	13	23	29	1.93
11224270--11224394	44	2.8	45	81	4	135	34	14	23	28	1.94
11244348--11244378	12	2.6	12	89	0	53	41	12	16	29	1.85
11245671--11245722	18	2.6	21	74	22	58	51	3	28	15	1.60
11245989--11246022	5	6.8	5	93	0	59	76	0	23	0	0.79
11246116--11246153	17	2.2	17	100	0	76	28	0	13	57	1.36
11252726--11252764	20	2.0	20	85	5	53	33	2	17	46	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11256163--11256272	44	2.6	42	78	7	105	20	20	28	30	1.97
11256210--11256305	42	2.3	42	82	7	115	25	17	26	31	1.97
11263274--11263326	26	2.0	26	100	0	106	45	0	15	39	1.46
11263274--11263336	26	2.4	26	92	5	92	44	0	15	39	1.47
11270552--11270611	9	6.7	9	78	0	57	6	30	1	61	1.31
11271010--11271191	48	3.8	48	90	1	267	21	22	19	36	1.95
11272476--11272535	9	6.7	9	78	0	57	6	30	1	61	1.31
11272934--11273115	48	3.8	48	91	1	276	21	22	19	36	1.95
11273158--11273209	24	2.2	24	92	0	86	13	25	15	46	1.82
11278562--11278589	7	4.0	7	100	0	56	28	14	0	57	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205