genome.fa.s19.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  164  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48846859--48846895	10	3.7	10	92	0	65	43	13	0	43	1.44
48847795--48848135	82	4.2	82	98	0	646	35	19	15	29	1.92
48848275--48848388	41	2.8	41	80	5	133	37	22	23	15	1.93
48848613--48848665	19	2.8	19	100	0	106	28	16	7	47	1.74
48849662--48849699	19	2.0	19	94	0	67	28	10	2	57	1.45
48849907--48850189	43	6.6	43	81	2	300	21	17	31	29	1.96
48849907--48850193	129	2.2	129	83	1	344	21	17	31	29	1.96
48850831--48850881	20	2.5	20	84	9	68	56	3	15	23	1.56
48850944--48851008	22	3.2	22	77	12	68	50	1	3	44	1.26
48850943--48851016	22	3.4	22	73	17	57	48	1	2	47	1.24
48851494--48851529	19	1.9	19	94	5	65	63	5	0	30	1.17
48851478--48851552	28	2.7	27	87	4	96	62	5	0	32	1.17
48851494--48851543	19	2.7	19	81	9	59	64	6	0	30	1.18
48853244--48853274	6	5.2	6	100	0	62	80	0	0	19	0.71
48853519--48853570	25	2.0	25	82	10	61	38	3	0	57	1.17
48856278--48856356	33	2.4	33	80	4	88	24	46	1	27	1.60
48857678--48857717	12	3.2	12	85	7	53	20	27	0	52	1.46
48861757--48861781	12	2.1	12	100	0	50	52	0	0	48	1.00
48865341--48865377	19	1.9	19	88	0	56	54	5	2	37	1.38
48865537--48865567	12	2.6	12	94	0	53	61	3	9	25	1.42
48867432--48867863	114	3.8	114	85	2	573	31	21	18	28	1.97
48867450--48867859	228	1.8	227	89	0	640	32	20	18	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48867764--48867909	74	2.0	73	82	8	179	30	19	21	28	1.98
48868651--48868692	21	2.0	21	85	0	57	40	7	2	50	1.43
48868716--48868764	20	2.4	20	86	3	62	32	2	8	57	1.40
48868730--48868779	20	2.5	20	96	3	93	32	0	12	56	1.36
48869450--48869500	19	2.7	19	84	9	68	27	41	0	31	1.56
48870460--48870485	5	5.2	5	100	0	52	42	19	19	19	1.90
48875869--48876285	43	9.7	43	83	2	385	34	21	19	24	1.96
48876182--48876308	43	3.0	43	81	7	125	26	24	21	27	1.99
48876875--48876996	48	2.6	47	80	1	145	28	22	14	34	1.94
48889711--48889755	23	1.9	24	81	4	56	22	2	48	26	1.62
48890171--48890222	17	2.9	18	74	5	61	44	1	17	36	1.60
48892523--48892697	46	3.8	46	95	1	298	21	20	28	29	1.98
48900052--48900363	46	6.8	46	97	0	561	20	19	28	30	1.97
48902335--48902410	38	2.0	38	100	0	152	42	5	34	18	1.73
48902843--48902980	69	2.0	69	94	0	240	47	20	16	15	1.83
48915159--48915206	21	2.3	22	78	7	55	29	29	25	16	1.97
48916618--48916758	47	2.9	49	76	8	151	26	14	21	36	1.92
48919485--48919629	75	1.9	75	92	0	245	38	14	13	33	1.85
48928994--48929329	132	2.5	132	95	1	595	28	25	17	27	1.98
48929345--48929448	44	2.4	44	90	0	163	30	21	19	28	1.97
48929692--48929940	45	5.6	45	74	7	231	25	24	19	30	1.98
48929664--48930151	89	5.5	88	87	5	617	25	24	19	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48929663--48930151	45	11.0	43	68	11	195	25	24	19	30	1.98
48929668--48930212	179	3.1	175	85	5	693	25	24	19	30	1.98
48929668--48930212	89	6.1	91	87	4	532	25	24	19	30	1.98
48931531--48931620	46	2.0	46	88	0	135	12	25	17	44	1.84
48931534--48931630	46	2.1	46	82	0	113	12	27	16	43	1.84
48945529--48945559	10	3.0	10	95	4	53	38	29	3	29	1.73
48947207--48947253	23	2.0	23	83	0	58	55	10	0	34	1.35
48951840--48952295	50	9.1	50	73	4	274	24	21	23	30	1.99
48951815--48952295	100	4.8	99	84	2	586	24	20	22	31	1.98
48951815--48952291	201	2.4	200	84	1	616	24	21	22	31	1.98
48952297--48952707	46	9.1	46	79	6	367	30	18	17	33	1.94
48952507--48952789	85	3.3	84	72	14	286	30	20	17	31	1.96
48952461--48952838	44	8.6	44	69	10	177	30	20	17	31	1.96
48952456--48952852	175	2.3	175	90	0	650	29	20	17	31	1.96
48956661--48957231	100	5.7	100	85	2	725	23	20	22	32	1.98
48956661--48957229	50	11.4	50	72	4	430	23	20	22	32	1.98
48957262--48957953	44	15.7	45	72	12	310	29	20	18	32	1.96
48957407--48957965	174	3.2	174	96	0	1028	28	21	18	31	1.97
48957241--48957827	46	13.2	46	74	13	428	28	20	18	32	1.96
48957311--48957827	220	2.4	218	76	9	514	28	20	18	32	1.96
48959188--48959230	21	2.0	22	90	4	70	13	13	2	69	1.28
48960062--48960105	21	2.1	21	83	8	54	0	27	0	72	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48964878--48964946	21	3.2	21	76	10	59	63	5	2	27	1.31
48971402--48971725	44	7.4	44	80	2	267	35	15	19	29	1.93
48971434--48971725	132	2.2	132	81	1	325	36	15	18	29	1.92
48972663--48972725	30	2.2	29	85	5	83	55	1	12	30	1.47
48975198--48975237	20	2.0	20	90	0	62	27	10	12	50	1.72
48975183--48975249	34	1.9	35	90	3	109	31	8	13	46	1.74
48975177--48975253	14	5.0	15	71	20	52	33	9	14	42	1.77
48987331--48987374	21	2.1	21	83	8	54	43	2	4	50	1.35
48991162--48991222	28	2.2	28	100	0	122	29	13	18	39	1.88
48993106--48993131	6	4.3	6	100	0	52	15	15	38	30	1.88
48993936--48993975	22	1.9	20	85	10	53	55	10	7	27	1.60
48993991--48994035	22	2.0	23	82	4	56	60	15	11	13	1.60
48996258--48996296	19	2.0	19	85	5	51	33	2	2	61	1.23
48999543--48999598	28	2.0	28	96	0	103	33	25	12	28	1.92
49005851--49005918	31	2.2	31	82	10	86	32	5	4	57	1.43
49008259--49008388	3	43.3	3	100	0	260	33	0	0	66	0.92
49009527--49009863	138	2.5	136	91	2	516	42	8	5	44	1.56
49011187--49011219	11	2.8	12	86	9	50	48	0	0	51	1.00
49026466--49026506	19	2.2	19	91	8	66	29	4	0	65	1.13
49026914--49026993	40	2.0	41	85	7	110	36	1	6	56	1.33
49027640--49027684	23	1.9	23	90	4	72	51	0	4	44	1.21
49030130--49030171	21	2.0	22	90	4	68	35	7	0	57	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49032777--49032807	15	2.0	16	93	6	55	35	25	19	19	1.95
49034446--49034550	52	2.0	52	86	0	147	32	20	18	28	1.96
49038913--49038972	15	3.9	15	82	2	75	31	25	3	40	1.72
49046399--49046453	23	2.4	23	82	11	76	25	25	5	43	1.76
49046966--49047008	22	1.9	23	85	4	61	34	0	2	62	1.08
49046986--49047015	15	2.0	15	93	0	51	36	0	3	60	1.14
49046956--49047094	74	1.9	75	87	4	210	40	2	2	54	1.27
49049792--49049913	54	2.3	54	79	0	145	26	19	24	29	1.99
49051462--49051499	6	6.3	6	100	0	76	18	0	47	34	1.49
49052987--49053015	5	5.8	5	100	0	58	0	41	0	58	0.98
49058433--49058458	7	3.7	7	100	0	52	42	15	0	42	1.47
49061923--49062033	20	5.3	20	68	23	68	44	0	0	54	1.12
49061931--49061997	16	3.9	16	70	16	53	47	0	1	50	1.10
49061959--49062033	19	3.8	18	81	15	78	40	1	1	57	1.16
49063085--49063121	20	1.9	18	89	10	56	51	0	0	48	1.00
49064663--49064695	15	2.1	16	94	5	59	66	0	0	33	0.92
49093882--49093933	22	2.4	22	96	0	95	25	7	26	40	1.82
49095423--49095626	103	2.0	101	97	1	381	38	7	13	40	1.73
49098449--49098503	16	3.4	16	73	19	51	14	1	5	78	1.02
49098520--49098548	15	1.9	15	100	0	58	31	6	0	62	1.22
49106574--49106602	8	3.6	8	100	0	58	34	0	0	65	0.93
49112303--49112336	14	2.4	14	90	5	50	41	5	5	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49112303--49112336	15	2.3	15	90	10	52	41	5	5	47	1.52
49121311--49121350	21	1.9	21	94	0	71	30	17	25	27	1.97
49121788--49121923	6	21.7	6	77	11	112	21	7	14	56	1.62
49125416--49125491	36	2.1	36	87	0	107	50	25	5	19	1.69
49125860--49125920	28	2.2	29	82	5	72	0	27	0	72	0.85
49126493--49126538	17	2.9	15	81	12	56	41	0	0	58	0.98
49129097--49129159	31	2.0	31	84	6	83	44	6	11	38	1.66
49129768--49129794	14	1.9	14	100	0	54	74	0	0	25	0.83
49130549--49130583	17	2.1	17	94	0	61	60	14	0	25	1.35
49130838--49130913	34	2.4	31	84	8	98	59	1	0	39	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205