genome.fa.s19.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  118  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35502625--35502653	13	2.2	13	100	0	58	41	41	0	17	1.49
35502820--35502879	9	6.7	9	96	0	102	23	10	28	38	1.87
35503039--35503063	12	2.1	12	100	0	50	16	24	36	24	1.94
35503395--35503447	22	2.3	23	78	12	56	50	3	9	35	1.53
35508131--35508161	14	2.2	14	100	0	62	48	16	22	12	1.80
35508911--35508964	21	2.6	21	85	5	74	22	22	33	22	1.97
35512047--35512139	37	2.5	38	82	10	120	35	40	8	15	1.77
35512613--35512654	21	2.0	21	81	9	50	26	14	35	23	1.93
35512637--35512685	21	2.3	21	82	0	62	28	20	30	20	1.98
35516081--35516261	40	4.6	40	79	8	165	26	22	25	25	2.00
35517348--35517386	18	2.1	18	85	4	51	64	0	17	17	1.30
35525324--35525394	37	1.9	37	100	0	142	21	7	19	52	1.70
35535033--35535285	27	9.4	27	77	6	219	43	17	18	19	1.88
35535043--35535283	81	3.0	81	83	2	279	43	18	18	19	1.88
35535636--35535698	28	2.3	28	86	2	83	19	22	25	33	1.97
35538671--35538732	28	2.2	28	80	2	72	35	24	19	20	1.96
35539074--35539253	27	6.7	27	78	6	177	16	18	20	44	1.87
35539084--35539253	54	3.2	54	80	6	202	16	18	19	45	1.85
35542236--35542280	21	2.1	21	95	0	81	37	35	8	17	1.81
35542241--35542288	21	2.5	19	83	10	62	41	33	8	16	1.78
35558345--35558396	25	2.1	25	92	0	86	15	36	30	17	1.91
35559416--35559578	35	4.6	35	80	3	148	39	31	11	17	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35572034--35572068	13	2.7	13	90	0	52	22	40	22	14	1.90
35579392--35579615	44	4.8	44	69	11	151	27	25	21	25	2.00
35579260--35579677	143	2.9	143	88	0	611	27	22	21	28	1.99
35581433--35581558	1	126.0	1	65	0	54	2	3	11	82	0.88
35581435--35581558	31	4.0	32	81	12	125	2	3	12	82	0.89
35581440--35581558	35	3.1	38	82	12	156	1	3	12	82	0.87
35581443--35581563	49	2.4	49	81	10	140	1	4	12	80	0.93
35581440--35581550	7	15.9	7	80	10	129	1	3	12	81	0.89
35589687--35589718	12	2.4	14	90	10	50	12	0	37	50	1.41
35592944--35592972	14	2.1	14	93	6	51	62	3	20	13	1.46
35594029--35594089	27	2.3	27	82	5	70	37	14	22	24	1.92
35598079--35598120	13	3.0	14	82	6	50	45	7	4	42	1.52
35604898--35604923	12	2.2	12	100	0	52	34	7	15	42	1.75
35604910--35604979	20	3.4	20	81	14	88	35	8	15	40	1.78
35604915--35604982	22	3.2	22	80	12	79	36	7	17	38	1.78
35605246--35605316	20	3.5	20	67	22	58	23	2	4	69	1.20
35605297--35605335	3	13.0	3	83	0	51	33	2	0	64	1.08
35605470--35605504	17	2.1	17	94	0	61	37	11	0	51	1.38
35605581--35605629	19	2.7	18	80	20	50	38	6	0	55	1.25
35605642--35605725	32	2.7	32	78	12	93	35	2	3	58	1.28
35605687--35605728	21	2.0	21	90	0	66	40	2	4	52	1.35
35610907--35611442	44	12.2	44	75	6	458	27	15	26	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35610890--35611442	132	4.2	132	91	2	876	27	15	26	30	1.96
35610890--35611442	265	2.1	264	91	1	876	27	15	26	30	1.96
35611423--35611652	88	2.6	88	88	0	334	27	29	23	19	1.98
35610979--35611556	265	2.2	262	82	5	610	28	17	25	28	1.98
35611437--35611682	88	2.8	88	84	1	242	26	29	23	19	1.99
35611652--35611817	44	3.8	44	80	3	190	25	15	28	30	1.96
35611652--35611817	88	1.9	88	89	0	260	25	15	28	30	1.96
35612609--35612653	23	2.0	23	86	4	65	37	6	17	37	1.76
35612924--35612953	7	4.4	7	95	4	53	30	0	0	70	0.88
35612928--35613024	3	33.0	3	74	12	67	32	2	3	61	1.23
35612924--35613023	14	7.4	13	68	23	55	32	2	3	63	1.21
35613154--35613197	17	2.6	17	85	3	63	40	11	0	47	1.39
35613210--35613311	39	2.6	38	72	7	96	31	3	5	58	1.40
35613357--35613413	30	1.9	30	89	7	89	35	3	3	57	1.33
35621668--35621693	12	2.2	12	100	0	52	50	26	7	15	1.71
35625565--35625895	170	2.0	167	83	5	423	35	16	16	32	1.90
35631474--35631519	2	23.0	2	100	0	92	50	0	50	0	1.00
35632166--35632245	21	3.6	21	88	8	106	52	1	1	45	1.16
35633711--35633771	15	3.9	15	72	19	52	62	3	6	27	1.36
35633707--35633781	18	4.2	18	76	10	57	62	4	6	26	1.38
35633806--35633861	15	3.7	15	75	0	58	67	5	1	25	1.21
35634992--35635258	50	5.3	50	77	2	250	22	19	22	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35635011--35635275	100	2.6	99	86	2	361	23	20	23	32	1.98
35636054--35636137	42	2.0	42	83	0	105	28	29	11	29	1.92
35637089--35637137	21	2.3	21	86	6	64	2	18	2	77	0.96
35637092--35637125	15	2.3	15	89	0	50	0	17	0	82	0.67
35637123--35637161	6	6.7	6	85	2	53	12	5	12	69	1.35
35642147--35642312	3	56.0	3	67	11	56	61	4	5	28	1.39
35642172--35642240	24	2.7	26	72	19	72	59	4	7	28	1.44
35643426--35643684	50	5.2	50	77	0	257	23	19	24	33	1.97
35643420--35643684	100	2.7	100	86	0	368	23	19	24	33	1.97
35644944--35644978	14	2.5	14	90	0	52	11	14	2	71	1.25
35650740--35650769	14	2.1	15	93	6	53	90	10	0	0	0.47
35651871--35651908	18	2.1	18	100	0	76	21	0	18	60	1.36
35660909--35660950	17	2.4	17	88	4	57	64	2	2	30	1.19
35672346--35672396	23	2.2	24	96	3	95	27	5	25	41	1.78
35676170--35676302	47	2.8	47	83	1	176	46	18	12	22	1.82
35676270--35676507	22	10.5	22	68	10	120	41	18	14	25	1.88
35676346--35676392	11	4.3	11	78	10	51	44	21	6	27	1.76
35676226--35676507	69	4.1	69	90	0	422	42	19	13	24	1.87
35677149--35677228	42	1.9	42	89	0	124	31	30	17	21	1.96
35685450--35685474	5	5.0	5	100	0	50	80	0	0	20	0.72
35699772--35699830	29	2.0	29	81	12	68	28	28	1	40	1.66
35715046--35715097	25	2.1	25	85	0	68	13	21	19	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35725862--35725931	34	2.1	34	82	15	85	48	0	2	48	1.16
35725901--35725955	24	2.3	25	78	12	62	54	0	1	43	1.10
35732232--35732289	30	1.9	31	85	3	82	37	8	5	48	1.56
35733022--35733085	29	2.2	29	83	8	76	34	10	9	45	1.72
35733208--35733330	31	4.1	31	77	9	94	39	12	10	38	1.77
35733215--35733288	31	2.4	31	88	2	105	39	13	10	36	1.80
35738983--35739014	15	2.1	15	94	0	55	21	3	6	68	1.26
35740722--35740769	12	4.1	12	75	24	57	50	2	0	47	1.12
35742897--35742969	26	2.8	27	85	6	96	39	6	20	32	1.79
35752753--35752814	29	2.2	28	82	2	70	24	12	17	45	1.84
35760916--35760951	3	12.0	3	100	0	72	33	0	0	66	0.92
35762038--35762198	74	2.2	74	94	0	286	44	13	13	29	1.80
35771377--35771409	17	1.9	17	100	0	66	12	15	18	54	1.71
35772128--35772226	43	2.3	43	82	3	137	26	15	18	40	1.89
35772821--35772888	21	3.2	20	66	25	50	25	13	20	41	1.88
35772823--35772890	22	3.1	21	66	26	52	25	11	20	42	1.86
35772811--35772909	43	2.3	43	89	3	155	28	15	16	40	1.88
35773462--35773624	54	3.1	54	73	16	148	46	3	1	48	1.27
35773663--35773692	15	1.9	16	93	6	53	43	0	6	50	1.28
35773563--35773889	120	2.7	120	97	0	611	43	2	4	49	1.35
35773524--35773889	120	3.0	127	87	9	521	43	2	4	49	1.36
35773636--35773823	61	3.1	61	68	11	188	43	2	5	48	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35773684--35773718	18	2.0	17	88	5	52	45	0	0	54	0.99
35780209--35780285	14	5.0	15	71	20	52	41	15	9	33	1.79
35780225--35780264	20	2.0	20	90	0	62	50	12	10	27	1.72
35780690--35780734	16	2.9	16	83	9	58	51	0	6	42	1.28
35786321--35786359	20	2.0	20	85	10	53	23	5	10	61	1.48
35787678--35787714	9	4.1	9	85	0	56	48	13	8	29	1.71
35787934--35787993	30	2.0	31	86	3	86	21	40	0	38	1.54
35792430--35792458	12	2.3	13	94	5	51	75	0	0	24	0.80
35795666--35795888	40	5.6	40	82	3	227	26	27	21	24	1.99
35795664--35795888	80	2.8	79	84	3	263	26	28	20	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205