genome.fa.s19.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  33  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9978170--9979059	397	2.2	397	86	3	1240	28	24	18	28	1.98
9981265--9981304	19	2.1	19	90	0	62	67	7	12	12	1.41
9984825--9984886	3	20.3	3	75	15	56	61	4	1	32	1.27
9984826--9984884	19	3.0	20	76	13	68	62	5	1	30	1.26
9984826--9984886	14	4.7	13	77	15	56	62	4	1	31	1.26
9984825--9984885	11	5.9	10	78	16	54	62	4	1	31	1.26
10002330--10002417	42	2.0	44	91	8	144	23	2	13	60	1.45
10004216--10004439	114	2.0	114	100	0	448	28	21	16	33	1.95
10006585--10006623	17	2.3	16	86	8	51	48	0	0	51	1.00
10008715--10008766	26	2.0	26	100	0	104	34	15	34	15	1.89
10014719--10014806	43	2.0	43	100	0	176	21	21	15	40	1.90
10015483--10015691	50	4.1	50	86	3	265	22	30	21	26	1.98
10021601--10021639	15	2.6	15	95	0	69	58	7	17	15	1.59
10022338--10022384	2	23.5	2	80	8	51	48	0	6	44	1.28
10022336--10022400	28	2.3	29	84	10	82	50	0	7	41	1.31
10022336--10022375	14	2.9	14	88	0	62	52	0	5	42	1.23
10022811--10022940	65	2.2	59	82	16	169	53	6	12	27	1.64
10026657--10026797	43	3.3	43	85	3	176	29	24	19	26	1.98
10027170--10027237	21	3.2	21	87	0	109	7	50	11	30	1.66
10029069--10029642	25	21.7	25	70	20	166	37	1	16	45	1.55
10029122--10029626	16	30.8	16	72	16	283	36	1	17	45	1.56
10029122--10029292	80	2.1	80	96	0	315	34	1	18	45	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10029202--10029497	113	2.8	106	82	12	358	38	1	16	43	1.55
10029069--10029635	9	64.2	9	70	16	341	37	1	16	45	1.55
10029789--10029869	12	7.2	12	68	20	50	40	0	13	45	1.44
10029912--10029972	25	2.4	25	86	5	79	34	1	18	45	1.59
10029911--10029980	9	8.2	9	72	15	51	34	1	17	47	1.56
10030052--10030086	17	2.1	16	94	5	61	40	17	8	34	1.80
10030147--10030188	22	1.9	22	95	0	75	45	2	4	47	1.36
10030143--10030331	83	2.2	86	92	7	312	48	6	5	39	1.53
10030309--10030339	13	2.4	13	100	0	62	58	0	0	41	0.98
10030327--10030404	28	2.7	29	74	7	70	47	7	3	41	1.50
10031854--10032016	83	1.9	86	83	6	217	34	19	15	30	1.92
10031890--10032095	83	2.5	82	83	1	223	33	22	13	30	1.92
10032892--10032925	14	2.3	15	95	5	61	44	32	0	23	1.54
10032877--10032936	21	2.8	20	73	9	57	45	38	0	16	1.48
10033123--10033217	49	1.9	49	81	8	113	51	22	3	23	1.62
10033247--10033516	115	2.4	112	88	3	391	25	22	20	31	1.98
10033430--10033700	93	2.9	92	90	3	420	23	22	20	33	1.97
10033609--10034043	114	3.8	114	83	1	505	27	22	17	32	1.96
10033609--10034026	228	1.8	228	85	2	588	27	22	16	32	1.96
10039680--10039711	13	2.5	13	94	0	55	56	0	3	40	1.15
10041565--10041594	14	2.1	14	93	0	51	20	0	3	76	0.92
10046754--10046780	7	3.9	7	100	0	54	0	14	11	74	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10049248--10049291	21	2.1	21	95	0	79	43	22	4	29	1.73
10053186--10053252	34	1.9	35	93	3	118	46	11	8	32	1.72
10056927--10057242	106	3.0	105	83	2	407	29	18	19	32	1.95
10058820--10059139	106	3.0	104	83	3	406	32	19	17	30	1.95
10061230--10061273	22	2.0	22	86	0	61	13	15	22	47	1.81
10061339--10061607	43	6.3	43	86	0	358	29	29	17	23	1.97
10065082--10065153	24	3.0	24	79	2	81	80	15	2	1	0.89
10065590--10065623	18	1.9	17	88	5	50	76	2	17	2	1.04
10065589--10065641	24	2.3	23	86	3	70	77	3	16	1	1.01
10066539--10066598	24	2.5	24	80	0	75	38	10	21	30	1.86
10066887--10067555	100	6.7	100	87	3	895	31	22	21	24	1.98
10066887--10067555	199	3.4	199	86	3	927	31	22	21	24	1.98
10066887--10067555	299	2.2	296	87	2	946	31	22	21	24	1.98
10067569--10068052	40	11.8	40	81	8	551	30	23	21	24	1.99
10067569--10068183	82	7.4	82	80	9	629	31	23	21	24	1.98
10068480--10068513	17	1.9	18	88	5	52	47	11	29	11	1.76
10070601--10070916	106	3.0	105	82	2	398	29	18	19	32	1.95
10072474--10072510	19	1.9	19	100	0	74	32	21	5	40	1.76
10085263--10085406	21	6.9	21	70	3	65	42	17	22	17	1.89
10085258--10085406	42	3.5	42	83	3	165	42	17	22	16	1.88
10091736--10091785	26	1.9	26	95	0	91	50	12	14	24	1.76
10108665--10108712	19	2.5	19	96	0	87	50	4	6	39	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10109059--10109111	4	14.2	4	75	15	51	50	0	0	49	1.00
10111994--10112077	31	2.8	31	76	7	75	25	14	8	52	1.69
10112854--10113016	63	2.6	63	95	0	281	36	16	16	30	1.91
10114316--10114396	42	1.9	42	97	0	153	28	27	20	23	1.99
10117635--10117695	29	2.3	27	76	20	65	11	16	1	70	1.24
10117977--10118010	16	2.1	16	89	10	52	29	0	0	70	0.87
10120440--10120545	21	5.0	21	78	4	106	17	23	16	42	1.88
10131203--10131227	12	2.1	12	100	0	50	48	0	0	52	1.00
10131288--10131312	13	1.9	13	100	0	50	56	0	0	44	0.99
10133443--10133484	21	1.9	23	81	18	54	45	11	7	35	1.69
10134635--10134667	18	1.9	18	88	11	52	33	0	12	54	1.37
10135797--10135833	19	1.9	19	94	0	65	62	0	2	35	1.10
10137422--10137459	16	2.4	16	90	0	58	31	0	34	34	1.58
10137672--10137713	15	2.7	16	82	14	52	52	2	0	45	1.13
10137681--10137722	15	2.9	15	82	10	52	52	0	0	47	1.00
10138014--10138191	92	1.9	92	88	6	272	47	4	2	44	1.37
10144457--10144504	17	2.8	17	90	6	71	35	6	2	56	1.36
10144801--10144841	21	2.0	21	90	0	64	36	26	9	26	1.88
10153990--10154075	43	2.0	43	97	0	163	20	26	0	52	1.47
10153990--10154048	15	4.1	15	70	14	52	20	27	0	52	1.47
10153980--10154060	18	4.1	18	70	26	65	22	27	0	50	1.49
10154728--10154766	19	2.1	18	85	4	51	33	17	0	48	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10155697--10155744	3	16.0	3	100	0	96	0	33	0	66	0.92
10158853--10158900	18	2.7	18	96	0	87	35	12	12	39	1.81
10159309--10159547	72	3.3	72	92	1	392	23	5	15	55	1.61
10162178--10162205	13	2.2	13	100	0	56	60	0	0	39	0.97
10163012--10163080	30	2.3	30	87	5	95	31	10	27	30	1.90
10171242--10171614	132	2.8	130	86	8	511	27	20	24	27	1.99
10171515--10171727	106	2.0	106	95	0	381	26	23	21	28	1.99
10171419--10171860	239	1.8	239	92	0	742	28	21	21	28	1.99
10171621--10172547	133	7.0	131	89	1	1022	29	18	23	27	1.98
10172354--10172535	44	4.2	45	67	9	108	32	19	22	25	1.98
10192279--10192322	11	4.0	11	80	11	54	81	0	6	11	0.86
10195406--10196161	379	2.0	379	97	0	1433	34	19	14	31	1.92
10205039--10205086	18	2.6	18	78	15	53	29	6	0	64	1.18
10206660--10206706	18	2.6	18	100	0	94	38	10	17	34	1.84
10206764--10206800	9	4.1	9	85	0	56	48	13	8	29	1.71
10207153--10207213	17	3.4	17	78	15	61	22	27	0	49	1.50
10207335--10207381	17	2.8	17	79	20	62	36	2	6	55	1.37
10207825--10207850	5	5.2	5	100	0	52	19	19	19	42	1.90
10211600--10211733	66	2.0	66	94	0	232	29	23	11	34	1.91
10215713--10215758	24	1.9	24	86	8	67	28	34	19	17	1.94
10217147--10217189	20	2.1	21	86	4	61	48	6	18	25	1.73
10217152--10217194	20	2.2	20	83	8	52	53	6	16	23	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10218876--10218967	36	2.5	36	79	8	105	10	25	4	59	1.49
10219927--10219961	16	2.2	16	89	0	52	34	11	0	54	1.37
10223606--10223870	139	1.9	140	91	2	435	47	14	23	14	1.81
10224046--10224364	159	2.0	159	95	0	575	29	13	12	43	1.81
10230955--10230994	19	2.0	20	85	4	55	27	0	2	70	1.01
10234691--10234866	37	4.8	37	96	0	298	39	13	21	26	1.90
10234829--10234952	46	2.8	46	91	3	200	33	16	22	27	1.96
10243488--10243701	37	5.8	37	97	0	392	39	13	20	27	1.89
10243663--10243786	46	2.8	46	91	3	200	33	16	22	28	1.95
10254992--10255024	16	2.1	16	94	0	57	45	0	0	54	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205