genome.fa.s19.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  166  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49412953--49412977	13	1.9	13	100	0	50	48	0	8	44	1.32
49417430--49417591	79	2.1	79	97	0	306	24	15	16	44	1.85
49417894--49417930	18	2.1	18	90	5	58	29	5	0	64	1.15
49424494--49424681	17	10.9	17	72	18	131	43	11	14	30	1.81
49424494--49424625	36	3.7	35	79	8	126	43	9	12	33	1.76
49424494--49424625	53	2.4	53	87	6	176	43	9	12	33	1.76
49424626--49424734	18	6.2	18	75	7	89	43	11	17	28	1.83
49424882--49424920	20	2.0	20	89	0	60	43	7	7	41	1.62
49425234--49425301	7	9.7	7	79	6	66	2	16	0	80	0.82
49425234--49425287	28	1.9	28	88	7	83	3	12	0	83	0.78
49425631--49425658	8	3.5	8	100	0	56	10	0	0	89	0.49
49425631--49425709	16	4.8	16	75	10	61	5	16	0	78	0.92
49425822--49425865	21	2.1	21	83	8	54	2	13	11	72	1.21
49425828--49425900	22	3.3	23	79	9	73	2	10	17	68	1.31
49426384--49426489	30	3.6	29	71	16	83	41	6	17	33	1.76
49426829--49427605	76	10.2	76	86	4	937	35	20	17	27	1.95
49426873--49427606	225	3.2	226	86	5	955	34	20	17	27	1.95
49429131--49429396	103	2.6	104	90	3	419	19	20	29	29	1.97
49436623--49436888	103	2.6	104	91	0	426	19	20	30	29	1.97
49449633--49449864	18	13.1	17	74	10	171	45	11	14	28	1.79
49449633--49449863	35	6.5	34	77	5	187	45	11	14	29	1.79
49450375--49450421	16	3.0	15	77	20	51	0	17	0	82	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49450383--49450419	14	2.8	13	88	8	56	0	18	0	81	0.70
49450781--49450845	13	4.9	13	78	1	76	0	21	1	76	0.86
49450789--49450854	26	2.4	27	80	5	71	0	24	1	74	0.91
49450781--49450841	31	1.9	33	86	6	90	0	22	1	75	0.89
49450765--49450845	8	9.5	8	78	12	56	2	17	1	79	0.92
49450959--49451002	19	2.2	20	84	11	56	2	13	11	72	1.21
49450986--49451039	22	2.3	24	84	9	76	3	9	18	68	1.32
49450973--49451038	19	3.3	18	75	19	51	3	10	15	71	1.26
49456844--49456870	11	2.5	11	100	0	54	25	0	0	74	0.83
49460659--49460711	21	2.5	21	84	6	72	30	28	15	26	1.96
49463264--49463339	9	8.4	9	79	5	91	40	21	10	27	1.86
49463442--49463485	18	2.4	18	88	0	61	13	2	43	40	1.57
49468604--49468643	3	13.3	3	100	0	80	67	0	0	32	0.91
49472807--49472835	7	4.3	7	91	8	51	13	0	0	86	0.58
49472807--49472842	13	2.8	13	95	0	63	11	0	2	86	0.68
49473866--49473935	27	2.5	28	81	6	88	34	1	0	64	1.03
49486339--49486410	34	2.1	35	87	5	103	22	15	0	62	1.32
49489271--49489326	29	1.9	29	88	0	85	21	1	19	57	1.50
49491463--49491497	6	5.8	6	100	0	70	51	17	0	31	1.45
49496646--49496697	25	2.0	27	85	11	72	30	1	3	63	1.23
49497416--49497447	16	2.0	16	100	0	64	50	6	25	18	1.70
49497562--49497623	19	3.0	21	71	23	60	46	1	3	48	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49498253--49498291	20	1.9	20	84	5	51	41	2	0	56	1.13
49501404--49501467	32	2.0	32	96	0	119	40	9	17	32	1.81
49501688--49501882	21	9.3	21	69	4	133	46	17	20	15	1.84
49501690--49501882	42	4.6	42	84	5	237	46	17	20	16	1.84
49508265--49508345	41	2.0	41	82	4	101	19	19	35	24	1.95
49508301--49508380	29	2.8	29	92	0	133	21	23	33	21	1.97
49508335--49508434	41	2.4	41	75	3	103	18	21	36	25	1.95
49509783--49509829	15	3.1	15	73	14	51	21	12	10	55	1.67
49510600--49510636	18	2.1	18	89	0	56	16	5	27	51	1.66
49510736--49510785	23	2.2	23	82	10	59	28	4	30	38	1.75
49512013--49512110	29	3.4	28	84	5	115	19	21	33	25	1.97
49512071--49512126	29	1.9	29	88	0	85	23	21	28	26	1.99
49513182--49513252	26	2.8	25	80	4	88	18	25	22	33	1.96
49523568--49523781	37	5.8	37	97	0	392	39	13	20	27	1.89
49523743--49523866	46	2.8	46	91	3	200	33	16	22	28	1.95
49528291--49528335	21	2.3	21	81	11	60	64	4	6	24	1.37
49529868--49530026	44	3.5	44	74	17	171	32	22	15	29	1.95
49529898--49530042	44	3.1	48	71	18	158	31	22	15	30	1.95
49529851--49530041	94	2.0	94	100	0	382	31	21	15	30	1.95
49530264--49531408	101	11.4	101	90	0	1535	24	20	22	32	1.98
49531435--49531754	132	2.4	131	85	1	451	27	25	19	28	1.98
49532909--49532970	6	10.7	6	73	13	58	0	22	0	77	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49532910--49532960	14	3.5	15	79	15	54	0	21	0	78	0.75
49532911--49532960	20	2.5	20	84	12	75	0	22	0	78	0.76
49532903--49532971	28	2.5	27	79	11	77	0	26	0	73	0.83
49532911--49532960	17	3.1	15	88	11	64	0	22	0	78	0.76
49532909--49532971	16	3.2	20	70	27	53	0	22	0	77	0.76
49533886--49533936	25	2.1	23	85	7	66	62	5	7	23	1.44
49541548--49541586	5	7.6	5	82	5	51	41	0	17	41	1.50
49548406--49548634	103	2.3	99	79	6	219	34	15	22	27	1.95
49554838--49554878	11	3.6	12	80	12	59	26	29	0	43	1.55
49555356--49555386	16	1.9	16	93	0	53	58	3	3	35	1.31
49557090--49557119	11	2.6	11	94	5	51	60	0	3	36	1.14
49565431--49565486	29	1.9	29	85	0	76	25	1	35	37	1.66
49566589--49566648	28	2.2	28	81	3	77	10	10	13	66	1.44
49568590--49568623	18	2.0	16	88	11	50	76	8	0	14	1.01
49568590--49568623	17	1.9	18	88	5	52	76	8	0	14	1.01
49575049--49575160	56	2.0	56	98	0	215	31	11	16	41	1.84
49578311--49578340	15	2.0	15	93	0	51	40	10	0	50	1.36
49581803--49581839	18	2.1	18	94	0	65	48	21	8	21	1.76
49591285--49591318	16	2.1	16	94	0	59	29	20	11	38	1.88
49596138--49596172	18	1.9	18	100	0	70	51	20	5	22	1.68
49602900--49602947	23	2.1	23	96	0	87	39	12	20	27	1.89
49604003--49604049	10	4.6	11	80	19	50	19	0	0	80	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49604004--49604047	20	2.4	18	88	11	63	20	0	0	79	0.73
49609097--49609145	24	2.0	26	88	8	75	59	0	0	40	0.98
49609102--49609155	25	2.2	25	77	9	58	61	0	1	37	1.07
49614541--49614588	19	2.7	18	81	15	55	37	0	2	60	1.09
49614999--49615043	23	2.0	22	82	4	54	37	0	2	60	1.09
49616386--49616531	76	1.9	76	84	5	197	29	18	21	30	1.97
49616834--49616883	6	8.2	6	93	2	82	82	0	18	0	0.68
49617292--49617329	19	2.0	20	84	5	51	52	2	10	34	1.50
49617539--49617615	5	15.4	5	89	5	120	38	0	19	41	1.52
49620355--49620389	19	1.9	17	88	11	52	51	0	11	37	1.38
49631619--49631695	39	2.0	38	94	0	127	28	22	35	12	1.91
49677068--49677126	31	1.9	31	86	6	84	44	5	10	40	1.60
49677214--49677249	19	2.0	18	89	10	56	27	0	5	66	1.13
49680594--49680619	10	2.6	10	100	0	52	26	23	38	11	1.89
49683049--49683103	27	2.0	27	86	6	76	12	14	0	72	1.12
49683316--49683350	17	2.1	17	94	0	61	34	5	8	51	1.56
49684529--49684593	31	2.1	31	85	0	85	32	9	10	47	1.70
49690357--49690503	57	2.6	57	98	0	285	31	10	3	54	1.52
49690392--49690487	29	3.3	29	71	18	101	32	12	4	51	1.59
49690364--49690503	28	4.9	28	68	21	103	32	11	2	53	1.51
49690895--49691036	31	4.6	31	74	0	122	33	11	10	43	1.76
49696819--49696903	29	2.8	30	71	10	82	28	12	11	47	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49707203--49707479	125	2.2	124	91	2	448	31	23	17	27	1.97
49708141--49708216	20	3.8	19	75	25	68	61	5	0	32	1.18
49708141--49708216	40	1.9	39	86	7	109	61	5	0	32	1.18
49711469--49711503	17	2.1	17	88	0	52	34	20	22	22	1.97
49713129--49713689	173	3.2	172	80	5	522	39	20	8	32	1.82
49713129--49713689	174	3.2	171	80	5	558	39	20	8	32	1.82
49716693--49716751	30	2.0	30	83	6	75	45	1	0	52	1.10
49733304--49733347	19	2.3	20	84	7	56	27	20	11	40	1.86
49737456--49737636	86	2.1	87	90	1	292	27	23	22	26	1.99
49737627--49737917	95	3.0	95	94	2	519	29	19	22	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205