genome.fa.s19.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  40  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11947371--11947419	21	2.3	21	89	0	71	2	40	20	36	1.64
11951086--11951140	14	3.9	14	71	19	51	40	36	0	23	1.55
11951078--11951119	23	1.9	23	90	9	70	40	33	0	26	1.56
11951076--11951137	30	2.0	31	96	3	117	40	32	0	27	1.57
11951109--11951147	21	1.9	20	89	5	60	43	35	0	20	1.52
11951207--11951746	115	4.7	113	76	6	462	25	23	19	31	1.98
11951207--11951824	229	2.7	226	76	8	597	25	23	19	31	1.98
11952633--11952685	16	3.3	16	89	0	79	39	3	32	24	1.73
11952671--11952762	44	2.0	46	91	4	152	30	4	29	35	1.77
11952667--11952772	44	2.5	41	77	18	126	31	3	30	34	1.75
11952919--11952971	18	3.0	17	91	5	79	56	1	1	39	1.21
11952953--11953135	61	3.0	61	70	9	187	51	4	2	40	1.36
11962453--11962551	50	2.0	50	83	0	126	40	12	15	32	1.84
11962539--11962573	5	6.8	5	87	6	52	20	2	2	74	1.08
11963595--11963639	22	2.0	22	100	0	90	26	22	8	42	1.83
11965485--11965787	27	11.3	27	77	4	247	39	20	19	21	1.93
11965471--11965695	54	4.2	54	88	1	276	41	20	18	19	1.90
11965471--11965709	81	3.0	80	83	3	284	42	20	18	19	1.90
11965822--11965894	24	3.1	24	86	5	96	17	8	26	47	1.75
11965966--11966022	27	2.1	27	87	6	80	19	24	22	33	1.97
11966010--11966063	26	2.1	26	89	0	81	22	22	20	35	1.96
11966020--11966075	26	2.2	26	83	0	67	17	23	26	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11966066--11966153	32	2.8	32	83	0	95	21	19	21	37	1.94
11966275--11966328	26	2.1	26	85	0	72	20	25	20	33	1.97
11966282--11966333	26	2.0	26	88	0	77	23	23	19	34	1.96
11976772--11976823	26	2.0	26	100	0	104	38	23	11	26	1.89
11983008--11983074	25	2.7	25	85	0	89	31	20	20	26	1.98
11985114--11985188	27	2.8	27	89	0	114	20	12	21	46	1.82
11987762--11987806	13	3.6	12	87	6	63	0	24	0	75	0.80
11987766--11987797	15	2.1	16	94	5	57	0	25	0	75	0.81
11993129--11993184	22	2.5	22	79	2	67	10	25	41	23	1.86
11995169--11995242	31	2.4	30	80	10	87	60	5	0	33	1.19
11995417--11995463	18	2.6	19	83	10	62	44	0	29	25	1.54
11995417--11995464	9	5.3	9	75	9	53	43	0	31	25	1.55
12002873--12003265	55	7.1	55	73	3	261	28	18	24	28	1.98
12004137--12004173	19	2.0	19	94	5	67	37	0	10	51	1.37
12004143--12004194	19	2.7	20	82	11	63	34	0	9	55	1.32
12012312--12012355	18	2.4	19	81	11	56	13	27	2	56	1.49
12018571--12018615	23	2.0	23	86	4	65	46	17	2	33	1.61
12018597--12018649	19	3.0	17	76	10	61	33	18	9	37	1.83
12018568--12018625	22	2.6	22	84	7	73	43	18	1	36	1.61
12023706--12023750	23	2.0	23	91	4	74	46	15	4	33	1.66
12023703--12023760	22	2.6	22	86	7	82	43	17	3	36	1.66
12023732--12023784	19	3.0	17	81	10	70	37	18	5	37	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12036133--12036158	5	5.2	5	100	0	52	19	0	0	80	0.71
12038803--12038827	13	1.9	13	100	0	50	28	0	0	72	0.86
12061359--12061503	43	3.4	43	81	6	136	30	24	15	29	1.95
12067902--12068058	43	3.7	43	81	2	174	31	24	14	29	1.94
12076118--12076175	17	3.4	18	74	6	50	65	0	1	32	1.03
12078107--12078166	31	1.9	31	83	6	77	31	6	16	45	1.74
12079020--12079049	12	2.5	12	100	0	60	13	26	0	60	1.34
12079939--12080014	9	8.4	9	76	5	73	42	21	7	28	1.81
12079947--12080014	27	2.5	27	90	4	102	41	22	8	27	1.83
12080141--12080165	13	1.9	13	100	0	50	12	0	48	40	1.40
12080136--12080179	18	2.4	18	88	0	61	13	2	43	40	1.57
12089537--12089603	33	2.0	33	94	0	116	29	16	10	43	1.81
12090237--12090479	50	4.7	50	81	3	252	23	27	22	27	1.99
12091763--12092029	104	2.6	104	94	0	462	30	30	20	18	1.96
12094202--12094253	24	2.2	24	89	0	77	55	9	1	32	1.43
12094926--12095115	95	2.0	97	90	2	303	31	17	13	36	1.89
12096900--12096947	24	2.0	25	84	12	64	54	10	10	25	1.66
12099261--12099525	103	2.6	104	90	3	417	29	29	20	19	1.97
12099853--12099917	30	2.2	29	81	8	76	30	27	6	35	1.81
12099860--12099917	30	1.9	30	85	0	80	31	24	6	37	1.82
12109118--12109155	18	2.1	18	95	0	67	39	7	10	42	1.69
12110433--12110510	6	13.5	6	82	8	81	33	6	46	14	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12110433--12110510	18	4.5	18	77	7	90	33	6	46	14	1.70
12110485--12110518	15	2.3	15	89	0	50	35	2	47	14	1.60
12110524--12110569	21	2.2	21	96	0	83	54	0	36	8	1.32
12110520--12110561	15	2.8	15	82	7	50	57	0	33	9	1.31
12115702--12116053	175	2.0	175	100	0	704	41	9	21	28	1.83
12131055--12131208	42	3.7	42	93	0	254	22	33	20	22	1.97
12131992--12132042	19	2.7	19	80	16	54	27	21	1	49	1.60
12133254--12133285	15	2.1	15	94	0	55	28	6	0	65	1.16
12138880--12138932	25	2.1	26	86	10	74	41	9	7	41	1.66
12139125--12139209	39	2.2	39	93	0	143	48	17	9	24	1.77
12139273--12139312	21	1.9	21	85	10	55	67	7	20	5	1.34
12141081--12141128	24	2.0	24	91	0	78	39	10	25	25	1.87
12144799--12144841	22	2.0	22	85	0	59	60	23	6	9	1.51
12145658--12145735	32	2.4	32	86	0	111	14	44	26	14	1.83
12154515--12154547	15	2.1	16	88	5	50	30	6	12	51	1.63
12160804--12160934	49	2.7	48	86	3	181	49	2	6	41	1.42
12164201--12164247	26	2.0	25	84	16	64	36	14	6	42	1.72
12164357--12164473	62	1.9	59	89	5	180	51	4	5	38	1.46
12169153--12169254	39	2.6	39	93	0	168	30	2	20	46	1.66
12172099--12172136	15	2.4	16	82	8	51	31	2	0	65	1.06
12173783--12173855	30	2.3	32	88	4	105	32	5	54	6	1.50
12173783--12173905	15	7.8	15	65	20	54	33	4	53	8	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12173941--12174157	30	7.2	30	93	2	357	49	0	10	39	1.40
12174787--12174829	23	2.0	23	81	9	54	65	2	0	32	1.06
12175071--12175123	21	2.5	21	90	0	79	30	37	9	22	1.86
12176993--12177054	20	3.0	20	90	4	88	54	4	4	35	1.43
12181352--12181440	46	1.9	47	88	2	135	30	23	8	37	1.86
12182547--12182601	28	2.0	28	82	10	69	63	1	0	34	1.05
12184177--12184217	17	2.5	17	81	14	50	65	0	4	29	1.13
12184870--12184911	16	2.5	17	77	14	52	71	2	21	4	1.16
12185924--12185986	26	2.4	27	79	10	78	44	7	6	41	1.59
12200113--12200222	42	2.6	42	81	7	125	30	27	15	26	1.96
12202726--12203009	49	5.7	48	81	8	291	25	11	12	51	1.73
12202726--12203009	100	2.9	99	87	2	390	25	11	12	51	1.73
12203245--12203289	21	2.1	21	100	0	90	28	22	4	44	1.72
12208841--12209145	49	6.2	49	84	4	384	24	11	13	50	1.74
12208841--12209145	100	3.1	97	87	5	418	24	11	13	50	1.74
12210903--12211068	81	2.0	82	97	1	316	36	9	4	50	1.54
12218021--12218060	16	2.5	16	91	0	62	22	22	5	50	1.68
12221999--12222035	16	2.2	17	90	4	58	16	0	8	75	1.02
12225325--12225377	27	1.9	28	84	3	72	22	1	1	73	1.03
12228645--12228672	9	3.1	9	100	0	56	10	0	0	89	0.49
12245942--12246042	44	2.3	47	79	10	113	21	26	25	25	2.00
12245967--12247741	218	8.1	218	89	1	2536	28	26	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12246064--12247696	44	37.5	44	67	10	304	28	25	18	27	1.98
12247596--12247725	44	2.9	44	79	3	127	30	27	16	26	1.96
12249847--12249892	6	7.7	6	92	0	74	15	0	10	73	1.08
12249807--12249851	22	2.0	22	87	8	65	2	17	0	80	0.82
12256602--12256654	25	2.1	24	83	13	63	52	0	0	47	1.00
12258227--12258574	123	2.8	120	87	5	500	29	15	21	33	1.95
12261591--12261854	30	9.0	29	84	12	335	27	0	25	47	1.52
12261594--12261854	29	8.9	29	85	9	350	27	0	25	47	1.53
12261596--12261854	59	4.4	59	85	9	366	27	0	24	47	1.52
12261737--12261854	36	3.6	36	81	17	136	26	0	25	48	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205