genome.fa.s19.2.7.7.80.10.50.1000.179.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  179  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53095401--53095594	50	3.9	50	82	4	214	27	22	28	21	1.99
53100853--53100894	20	2.1	20	86	0	57	47	0	7	45	1.30
53114239--53114315	35	2.2	35	100	0	154	42	14	12	29	1.83
53114332--53114417	4	21.5	4	95	0	154	22	0	27	50	1.50
53128828--53128867	11	3.6	11	93	6	64	22	35	0	42	1.54
53129874--53129911	20	1.9	20	89	10	60	36	2	5	55	1.37
53131227--53131274	25	1.9	25	100	0	96	45	0	14	39	1.45
53131326--53132121	23	35.8	23	81	10	901	47	25	0	26	1.54
53131370--53132121	44	16.9	44	86	7	895	47	25	0	26	1.54
53132187--53132255	27	2.6	26	71	22	70	43	5	1	49	1.35
53132126--53132369	116	2.1	117	92	1	402	39	9	6	44	1.63
53134436--53134716	140	2.0	140	98	0	544	23	20	22	33	1.97
53135519--53135889	125	3.0	124	90	1	571	31	23	14	30	1.94
53136454--53136485	14	2.3	14	94	0	55	12	15	0	71	1.14
53141054--53142489	714	2.0	717	97	1	2707	39	19	7	33	1.79
53143066--53143158	42	2.2	42	88	0	150	25	26	8	38	1.85
53150495--53150705	117	1.8	117	87	2	316	24	12	21	42	1.87
53154112--53154287	33	5.3	32	79	6	124	28	4	46	21	1.71
53158205--53158278	32	2.3	32	83	0	94	29	8	17	44	1.77
53160538--53160618	27	3.0	26	70	21	67	38	2	1	58	1.20
53165242--53165299	26	2.2	26	96	0	107	41	25	13	18	1.88
53166175--53166224	21	2.5	20	83	9	66	12	2	22	64	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53166294--53166318	12	2.1	12	100	0	50	40	16	8	36	1.77
53167464--53167500	18	2.1	18	89	0	56	29	18	13	37	1.90
53170188--53170230	21	2.0	22	86	4	61	51	0	0	48	1.00
53170270--53170330	19	3.2	18	78	19	61	49	0	0	50	1.00
53171682--53171722	13	3.2	13	75	25	50	0	31	21	46	1.52
53174678--53174743	18	3.7	18	93	0	114	34	15	10	39	1.82
53175139--53175310	72	2.4	71	87	0	254	25	6	13	54	1.62
53177082--53177125	19	2.3	19	80	7	54	47	2	0	50	1.13
53177351--53177396	23	2.0	23	86	4	65	36	21	2	39	1.66
53177386--53177410	13	1.9	13	100	0	50	48	16	0	36	1.46
53186591--53186631	21	2.0	21	90	0	64	19	26	4	48	1.69
53195512--53195595	44	2.0	42	93	6	143	45	16	4	33	1.69
53200913--53200983	31	2.4	29	77	9	74	47	2	8	40	1.48
53207958--53208023	31	2.1	31	88	0	96	15	25	9	50	1.73
53208408--53208450	16	2.7	16	86	10	61	55	0	0	44	0.99
53210297--53210339	3	14.3	3	100	0	86	67	0	0	32	0.91
53211910--53212166	101	2.5	101	85	1	327	26	24	19	29	1.98
53212104--53212229	62	2.0	64	89	6	195	25	23	19	32	1.97
53212200--53212360	50	3.2	50	66	3	128	26	27	20	26	1.99
53212003--53212329	163	2.0	164	89	3	507	25	24	20	29	1.99
53212168--53212360	100	1.9	99	92	1	323	26	25	20	27	1.99
53212360--53212577	88	2.5	88	96	0	391	25	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53213609--53213659	15	3.5	15	87	12	63	13	17	0	68	1.21
53213609--53213660	22	2.4	22	90	9	81	15	17	0	67	1.24
53213609--53213660	7	7.3	7	80	20	63	15	17	0	67	1.24
53214156--53214219	9	7.0	9	75	10	58	3	4	9	82	0.91
53214157--53214218	11	5.8	10	79	9	61	3	4	8	83	0.88
53214160--53214210	10	4.7	11	81	9	52	3	3	9	82	0.93
53217059--53217956	444	2.0	442	98	0	1733	52	5	9	32	1.58
53218029--53218086	3	19.3	3	100	0	116	67	0	0	32	0.91
53219663--53220131	101	4.7	101	86	3	572	26	25	19	28	1.99
53219764--53220116	50	7.0	50	67	5	237	26	26	19	27	1.99
53220130--53220653	88	6.0	88	93	0	832	27	26	20	25	1.99
53221376--53221444	8	8.3	9	70	23	53	42	0	1	56	1.08
53221376--53221439	15	4.0	15	75	8	56	40	0	1	57	1.08
53221374--53221423	20	2.4	22	86	10	77	40	0	0	60	0.97
53224539--53224597	7	8.3	7	82	17	77	15	16	0	67	1.23
53224535--53224596	15	4.3	15	90	10	94	12	17	0	69	1.19
53224535--53224608	15	5.1	14	87	11	62	13	17	0	68	1.20
53225095--53225152	12	4.7	12	79	14	57	3	6	6	82	0.93
53238251--53238320	33	2.1	33	81	5	79	62	11	14	11	1.54
53245518--53245630	48	2.4	48	81	0	136	30	22	15	31	1.95
53245613--53245818	96	2.1	96	83	1	252	27	21	16	34	1.95
53246769--53246814	19	2.3	21	85	7	60	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53247996--53248073	39	2.0	39	87	0	111	41	24	6	28	1.79
53250250--53250300	25	2.0	25	85	7	68	19	17	29	33	1.95
53259910--53260086	59	2.9	62	73	13	186	42	1	3	51	1.30
53259969--53260188	102	2.2	102	94	0	386	42	1	4	51	1.33
53260172--53260306	18	8.0	17	69	19	86	41	0	1	56	1.14
53260187--53260245	26	2.3	25	85	8	82	40	0	1	57	1.09
53260200--53260255	15	4.0	15	73	17	57	44	0	0	55	0.99
53277281--53277341	24	2.6	24	78	17	65	40	0	6	52	1.27
53278730--53278813	40	2.1	40	100	0	168	28	10	11	48	1.73
53284001--53284042	17	2.5	17	80	3	50	40	4	0	54	1.21
53284323--53284353	15	2.1	15	100	0	62	19	32	0	48	1.49
53290221--53290263	22	2.0	21	82	17	52	44	2	9	44	1.49
53292401--53292434	7	4.9	7	96	0	59	17	0	23	58	1.38
53296007--53296177	55	3.1	55	61	20	129	45	8	10	36	1.69
53296572--53296611	16	2.7	14	85	14	62	50	0	0	50	1.00
53306201--53306382	63	2.9	63	83	0	204	25	19	25	29	1.99
53316584--53316622	14	2.7	15	84	15	55	64	0	28	7	1.21
53318028--53318081	28	1.9	28	100	0	108	44	3	16	35	1.66
53335045--53335082	19	2.1	19	90	5	60	65	2	0	31	1.06
53343588--53343613	13	2.0	13	100	0	52	53	15	7	23	1.67
53351031--53351128	45	2.2	45	81	3	108	42	8	20	28	1.80
53351122--53351151	12	2.4	13	94	5	53	56	0	26	16	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53351140--53351188	21	2.3	22	79	13	57	48	8	12	30	1.69
53353005--53353087	25	3.3	25	78	11	107	27	15	21	34	1.94
53367485--53367523	21	1.9	20	89	5	60	10	28	30	30	1.90
53372307--53372398	14	6.6	13	67	18	51	39	1	2	57	1.18
53372333--53372446	55	2.1	53	87	6	158	42	0	3	53	1.18
53381724--53381768	22	2.0	22	86	0	63	82	2	11	4	0.91
53381724--53381759	10	3.8	9	89	10	54	86	2	8	2	0.77
53384593--53384639	20	2.3	20	85	0	67	29	36	12	21	1.91
53387811--53387872	31	2.0	31	84	6	81	38	8	6	46	1.59
53399305--53399340	18	2.0	18	100	0	72	22	22	33	22	1.97
53403822--53404002	25	7.3	25	70	10	129	36	25	12	25	1.91
53413013--53413173	74	2.2	73	97	1	304	44	36	1	17	1.60
53413013--53413173	73	2.2	68	87	11	196	44	36	1	17	1.60
53413331--53413390	21	2.8	22	82	7	79	85	5	10	0	0.75
53413343--53413390	22	2.1	23	88	11	73	85	6	8	0	0.74
53419793--53419886	25	3.8	25	76	0	89	23	22	25	28	1.99
53425679--53425748	5	13.8	5	75	21	58	24	0	0	75	0.80
53425679--53425740	4	15.8	4	82	17	53	24	0	0	75	0.80
53425924--53425972	21	2.5	20	87	9	66	16	6	4	73	1.19
53427714--53427770	30	1.9	30	88	0	87	19	28	31	21	1.97
53441757--53441918	50	3.3	49	83	1	162	38	22	13	25	1.90
53444809--53444872	30	2.1	30	100	0	128	32	18	14	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53445417--53445468	24	2.2	24	85	0	68	36	13	32	17	1.89
53448499--53449404	453	2.0	452	99	0	1794	31	15	18	33	1.92
53452336--53452429	23	4.1	23	88	2	127	44	25	18	11	1.83
53456974--53457165	96	2.0	96	95	0	348	47	9	12	29	1.73
53460099--53460129	15	2.1	15	93	0	53	29	29	6	35	1.82
53460145--53460321	75	2.4	75	82	5	207	37	22	14	25	1.92
53460147--53460311	25	6.6	25	76	7	147	38	22	13	24	1.91
53471602--53471683	3	27.3	3	97	0	155	0	31	0	68	0.90
53485662--53485700	18	2.2	18	90	0	60	10	5	10	74	1.21
53485667--53485713	18	2.6	19	80	10	53	10	6	6	76	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205