genome.fa.s19.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  115  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34633782--34634366	115	5.1	114	83	2	604	30	22	21	25	1.99
34633846--34634339	229	2.2	229	82	2	589	28	22	22	25	1.99
34634167--34634511	183	1.9	184	87	3	516	27	24	24	23	2.00
34635095--34635132	13	2.8	14	80	19	53	65	5	5	23	1.34
34635505--34635590	30	2.9	28	81	11	91	59	4	1	34	1.26
34635728--34635772	17	2.7	17	82	3	56	53	0	8	37	1.32
34636257--34636308	21	2.6	20	93	6	88	36	15	11	36	1.84
34638492--34638576	43	2.0	42	88	2	125	32	9	2	55	1.45
34640004--34640178	69	2.5	70	81	7	198	52	15	23	8	1.70
34641569--34641735	89	1.9	89	83	5	221	27	27	22	22	1.99
34641762--34642281	44	11.6	44	69	14	224	30	17	22	29	1.97
34641939--34642326	44	8.6	45	68	16	128	28	17	25	29	1.97
34642256--34642535	103	2.7	103	84	2	339	30	17	22	30	1.96
34642700--34643037	44	7.6	44	75	4	216	30	18	22	28	1.97
34642698--34643037	133	2.6	131	80	2	356	30	18	22	27	1.97
34642969--34643282	139	2.3	139	90	1	479	30	18	21	28	1.97
34648532--34648782	114	2.2	113	85	1	349	29	15	17	36	1.91
34650599--34650652	25	2.2	25	89	0	81	25	11	44	18	1.83
34650766--34650812	24	2.1	21	84	11	58	31	4	40	23	1.74
34652120--34652250	27	4.9	27	79	9	133	41	19	13	25	1.88
34652120--34652250	53	2.4	54	82	6	160	41	19	13	25	1.88
34655150--34655241	22	4.2	22	84	5	132	30	28	0	41	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34655191--34655293	52	2.0	51	83	9	129	32	32	0	35	1.58
34655243--34655296	22	2.5	22	82	8	67	33	33	0	33	1.58
34655326--34655381	28	2.0	29	89	3	87	35	0	1	62	1.06
34655326--34655389	28	2.2	29	86	2	85	35	0	1	62	1.05
34667967--34668021	19	2.9	19	89	5	76	21	9	34	34	1.85
34670160--34670191	16	1.9	17	93	6	57	40	0	6	53	1.26
34672182--34672211	12	2.5	12	100	0	60	26	40	26	6	1.81
34682078--34682133	22	2.5	22	88	8	78	39	44	0	16	1.47
34682079--34682128	11	4.5	11	73	16	50	40	46	0	14	1.44
34682078--34682140	22	2.9	22	86	9	67	38	46	1	14	1.54
34692629--34692807	85	2.1	85	100	0	358	26	26	8	39	1.84
34704096--34704126	14	2.2	14	94	0	53	61	12	3	22	1.46
34714914--34714974	28	2.2	29	85	11	83	44	4	1	49	1.33
34735340--34735380	21	1.9	22	85	5	57	46	2	7	43	1.44
34735338--34735387	21	2.3	20	80	12	55	44	2	6	48	1.39
34736203--34736276	30	2.5	31	80	6	89	39	16	10	33	1.83
34743103--34743187	42	2.0	42	97	0	161	35	29	17	17	1.93
34743318--34743807	27	18.2	27	80	7	444	44	18	15	21	1.87
34743999--34744101	26	4.0	26	92	0	170	14	20	24	40	1.90
34744212--34744349	28	5.0	28	79	0	161	23	22	23	30	1.99
34744207--34744349	56	2.6	56	88	2	216	23	22	23	30	1.99
34748018--34748060	18	2.4	18	88	0	59	62	2	16	18	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34748012--34748059	18	2.7	18	78	15	55	60	2	14	22	1.45
34750222--34750268	15	3.2	15	77	22	55	68	0	25	6	1.13
34754536--34754595	24	2.5	25	83	8	79	36	33	5	25	1.78
34786966--34787442	236	2.0	236	97	0	909	30	29	14	25	1.95
34787560--34787626	27	2.5	27	80	0	71	28	17	14	38	1.90
34787580--34787657	27	2.9	27	83	5	86	23	16	19	41	1.90
34787610--34787671	27	2.3	27	94	0	106	16	17	22	43	1.87
34787610--34787683	27	2.7	27	85	4	87	18	16	20	44	1.87
34796106--34796251	41	3.6	41	89	0	202	35	13	31	19	1.91
34796124--34796190	21	3.2	21	66	19	59	29	13	35	20	1.91
34796227--34796268	20	2.1	20	90	0	66	45	14	28	11	1.80
34799437--34799559	29	4.3	28	78	5	122	37	20	17	24	1.94
34817298--34817537	50	4.7	50	79	4	203	27	20	29	23	1.99
34817357--34817537	100	1.8	100	81	0	227	27	20	30	20	1.98
34820565--34820804	50	4.7	50	79	4	203	27	20	29	23	1.99
34820624--34820804	100	1.8	100	81	0	227	27	20	30	20	1.98
34821181--34821207	14	1.9	14	100	0	54	14	14	0	70	1.17
34829248--34829282	16	2.2	16	89	0	52	42	0	31	25	1.55
34829823--34829890	27	2.5	28	74	13	68	45	1	4	48	1.31
34842984--34843013	14	2.1	14	100	0	60	33	6	30	30	1.83
34844210--34844251	22	1.9	22	85	9	59	52	0	0	47	1.00
34847876--34847935	27	2.2	27	82	5	68	20	11	26	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34847889--34847949	27	2.3	27	91	8	106	16	13	22	47	1.81
34847903--34847965	27	2.3	27	86	0	81	19	12	25	42	1.86
34855240--34855294	24	2.3	24	96	0	101	45	7	10	36	1.67
34858053--34858145	29	3.2	29	77	7	89	22	24	16	36	1.94
34858055--34858202	59	2.5	59	81	4	149	23	25	12	37	1.91
34858122--34858254	29	4.5	30	69	9	85	23	28	9	38	1.86
34864081--34864242	29	5.6	29	76	7	123	23	26	12	37	1.90
34864081--34864304	58	3.8	58	74	10	170	23	25	12	39	1.89
34864202--34864359	29	5.4	29	85	2	194	24	24	10	41	1.85
34864173--34864359	87	2.1	87	82	9	222	24	24	11	40	1.87
34877815--34877843	14	2.1	14	100	0	58	51	20	6	20	1.70
34881093--34881205	28	4.1	28	85	7	151	30	23	22	23	1.99
34881317--34881440	26	4.8	25	75	11	99	45	20	17	16	1.86
34881307--34881440	52	2.6	51	85	2	160	45	20	17	17	1.86
34881621--34881734	27	4.2	27	79	7	70	19	13	22	44	1.85
34881662--34881964	54	5.6	55	82	5	336	22	14	18	44	1.86
34881634--34881991	27	13.4	26	76	11	196	21	14	18	45	1.85
34881634--34881991	81	4.5	78	77	12	323	21	14	18	45	1.85
34888616--34888722	28	3.9	28	87	1	144	29	23	22	24	1.99
34888838--34888912	26	2.9	26	83	0	78	46	21	14	17	1.83
34889108--34889376	27	10.0	26	78	7	222	23	11	19	44	1.84
34889149--34889376	81	2.8	80	85	5	291	24	11	19	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34891403--34891432	14	2.1	14	100	0	60	26	13	6	53	1.64
34900472--34900511	20	2.0	20	95	0	71	50	0	17	32	1.47
34911450--34911474	11	2.3	11	100	0	50	36	0	16	48	1.46
34924101--34924164	32	2.0	32	87	6	94	34	0	4	60	1.17
34927136--34927168	9	3.8	9	88	4	50	9	12	12	66	1.44
34927150--34927242	46	2.0	46	97	0	177	29	6	12	51	1.65
34928715--34928742	14	2.0	14	100	0	56	78	0	7	14	0.95
34933046--34933085	21	1.9	21	89	0	62	37	7	0	55	1.29
34935941--34936047	50	2.1	50	80	0	124	22	29	19	28	1.98
34945761--34945811	24	2.1	24	92	0	84	37	25	13	23	1.92
34946023--34946071	20	2.5	20	81	15	66	12	24	6	57	1.58
34946361--34946510	50	3.0	49	78	3	156	18	32	24	25	1.97
34948915--34948950	17	2.1	17	89	0	54	47	2	11	38	1.54
34954350--34954742	27	14.6	27	77	7	372	40	19	16	23	1.91
34955011--34955061	26	2.0	26	84	0	66	23	19	21	35	1.96
34956571--34956718	27	5.5	27	87	1	181	40	18	20	20	1.91
34957120--34957179	29	2.0	32	87	9	90	30	15	13	41	1.85
34961777--34961811	18	1.9	18	94	0	61	77	5	5	11	1.12
34970667--34970698	16	2.0	16	93	0	55	59	0	15	25	1.36
34971160--34971334	90	1.9	90	95	0	314	31	12	21	34	1.91
34975805--34975989	101	1.8	102	91	3	311	25	17	25	30	1.98
34975802--34975991	51	3.8	49	81	4	220	25	17	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34975911--34975991	26	3.2	26	64	28	64	25	13	27	33	1.94
34979297--34979430	50	2.7	50	83	3	162	24	20	25	29	1.99
34979297--34979438	51	2.8	49	82	3	167	25	20	25	28	1.99
34979437--34979525	46	2.0	44	86	4	124	24	16	25	32	1.96
34983778--34984067	40	7.3	40	93	1	422	24	21	27	26	1.99
34983725--34984067	80	4.3	80	88	2	424	25	20	27	26	1.99
34983725--34984069	120	2.9	118	86	3	424	24	20	27	26	1.99
34991804--34992013	40	5.3	39	89	4	242	25	21	27	25	1.99
34991751--34992013	120	2.2	120	82	4	309	25	21	27	25	1.99
34991752--34992048	80	3.7	80	81	6	230	26	21	27	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205