genome.fa.s19.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  140  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42494390--42494438	22	2.2	22	89	7	73	48	16	20	14	1.80
42502019--42502048	15	2.1	15	93	6	53	20	33	10	36	1.86
42506385--42506562	27	6.6	27	84	3	205	29	28	15	26	1.96
42506406--42506561	82	1.9	81	88	3	233	29	28	15	26	1.96
42507050--42507075	12	2.2	12	100	0	52	42	0	7	50	1.31
42514500--42514677	27	6.6	27	84	3	205	29	28	15	26	1.96
42514521--42514676	82	1.9	81	88	3	233	29	28	15	26	1.96
42517486--42517537	25	2.1	25	92	7	88	17	26	3	51	1.62
42522591--42522661	21	3.3	21	66	14	54	39	9	22	28	1.86
42522600--42522670	23	3.2	23	65	15	67	40	9	23	25	1.85
42532789--42532941	24	6.7	23	71	14	111	52	5	5	35	1.48
42532856--42532939	44	1.9	44	82	4	107	54	4	4	35	1.42
42532789--42532941	68	2.2	69	79	7	170	52	5	5	35	1.48
42533750--42533811	25	2.4	25	81	5	70	80	4	8	6	1.01
42534461--42534502	21	2.0	21	90	0	66	52	0	0	47	1.00
42536602--42536670	26	2.7	24	78	12	66	55	8	4	31	1.50
42540429--42540472	18	2.4	18	92	0	70	18	6	50	25	1.71
42542736--42542810	33	2.3	33	92	0	123	45	4	2	48	1.35
42542861--42542900	13	2.9	13	82	13	53	57	0	0	42	0.98
42542933--42542989	15	3.5	15	76	17	60	49	1	3	45	1.29
42543731--42543756	13	2.0	13	100	0	52	15	7	0	76	0.99
42564662--42564919	84	3.0	86	85	9	346	39	16	6	37	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42564753--42564974	89	2.6	87	81	9	197	37	17	9	35	1.83
42565078--42565130	9	6.0	9	80	12	56	67	1	3	26	1.17
42565092--42565210	20	6.3	19	68	12	59	66	3	2	27	1.20
42565087--42565176	28	3.2	27	78	10	92	66	3	1	28	1.14
42565113--42565193	30	2.7	29	73	19	69	67	2	1	28	1.11
42565492--42565653	9	17.4	9	69	16	73	30	3	1	64	1.19
42565480--42565520	20	2.0	20	90	9	66	24	2	4	68	1.22
42565573--42565628	20	2.7	21	78	13	71	41	0	0	58	0.98
42565573--42565628	21	2.7	22	81	10	64	41	0	0	58	0.98
42567612--42567644	17	1.9	17	93	0	57	51	0	18	30	1.46
42569358--42569586	35	6.7	34	78	5	221	43	23	11	21	1.85
42569358--42569586	69	3.4	68	82	4	257	43	23	11	21	1.85
42569967--42569999	17	1.9	17	88	11	50	6	36	12	45	1.66
42570107--42570138	15	2.1	15	94	0	55	25	21	6	46	1.74
42571252--42571684	43	10.1	43	76	4	277	41	22	14	22	1.89
42571252--42571684	86	5.1	85	79	3	395	41	22	14	22	1.89
42571254--42571523	129	2.1	128	82	3	328	40	23	14	21	1.90
42577463--42577503	21	2.0	21	81	18	50	31	19	26	21	1.97
42587363--42587405	15	3.1	13	84	15	59	60	13	9	16	1.58
42590022--42590085	24	2.7	22	77	13	74	62	4	0	32	1.16
42594556--42594599	23	1.9	23	90	0	70	15	15	29	38	1.89
42594555--42594606	23	2.3	22	83	9	68	13	15	30	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42600360--42600412	25	2.0	27	82	7	65	28	16	5	49	1.69
42607401--42607440	17	2.4	17	82	0	53	57	0	2	40	1.12
42607686--42607730	21	2.1	21	83	0	54	31	26	0	42	1.56
42607659--42607713	16	3.4	16	82	5	67	36	23	3	36	1.73
42612472--42612565	27	3.5	27	81	5	109	37	10	21	30	1.87
42612460--42612565	54	2.0	54	84	0	140	37	11	22	28	1.89
42615135--42615381	39	6.3	39	83	2	291	34	19	29	16	1.94
42615169--42615230	19	3.2	19	72	4	70	35	20	30	12	1.91
42615153--42615371	117	1.9	117	87	1	323	32	18	31	17	1.94
42622468--42622530	20	3.2	20	69	13	67	23	33	12	30	1.92
42622428--42622666	39	6.1	39	83	0	289	19	29	17	33	1.94
42622464--42622598	19	6.9	20	64	13	66	19	30	16	34	1.94
42623863--42623912	26	1.9	26	95	0	91	30	16	6	48	1.70
42624309--42624456	75	2.0	75	90	2	235	46	10	13	29	1.77
42624435--42624845	128	3.1	134	80	9	437	40	7	6	44	1.60
42626743--42626781	12	3.2	12	92	7	62	15	38	17	28	1.91
42633630--42633989	183	2.0	183	94	0	630	22	27	19	30	1.98
42645984--42646022	17	2.2	18	86	13	55	53	7	7	30	1.57
42646731--42646886	28	5.6	28	80	4	163	26	13	23	36	1.92
42646723--42646885	55	2.9	55	82	5	186	27	13	23	35	1.92
42646731--42646886	83	1.9	84	86	6	228	26	13	23	36	1.92
42651578--42651623	24	1.9	24	82	8	58	54	13	10	21	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42668708--42668769	26	2.4	26	94	2	108	33	3	25	37	1.72
42678645--42678688	21	2.0	22	86	4	63	20	6	40	31	1.79
42678659--42678688	11	2.7	11	89	0	51	23	3	46	26	1.68
42684975--42685487	254	2.0	254	86	2	717	28	21	15	33	1.94
42685767--42685832	33	2.0	33	87	0	96	33	27	18	21	1.96
42690558--42690600	22	2.0	22	95	0	77	34	25	9	30	1.87
42691278--42691327	22	2.3	22	82	0	55	28	14	4	54	1.58
42698240--42698695	110	4.2	109	85	3	603	31	13	22	32	1.92
42703673--42703864	50	3.8	50	86	2	269	27	22	28	21	1.99
42703678--42703903	50	4.5	50	84	1	204	28	22	26	22	1.99
42705860--42705938	37	2.1	37	90	0	122	25	31	18	24	1.98
42706057--42706704	47	13.4	47	89	5	909	29	28	8	33	1.87
42706109--42706702	98	6.1	98	90	4	970	30	27	8	33	1.86
42711399--42711758	20	18.0	19	66	11	141	36	17	28	17	1.93
42711471--42711758	40	7.2	39	86	6	364	36	17	28	18	1.93
42711431--42711758	120	2.7	120	83	5	421	36	17	28	17	1.93
42714739--42714783	23	1.9	23	81	4	54	57	6	2	33	1.37
42722072--42722111	18	2.2	18	86	0	53	65	2	25	7	1.32
42723699--42723735	19	1.9	19	89	10	58	40	29	13	16	1.86
42732183--42732228	22	2.2	22	92	7	78	17	34	13	34	1.88
42732200--42732339	29	4.8	29	78	5	122	27	27	10	35	1.90
42733856--42733896	21	2.0	21	95	0	73	51	9	12	26	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42738248--42738530	140	2.0	140	97	0	530	34	13	13	38	1.84
42741884--42742020	41	3.4	41	87	1	186	18	20	29	32	1.96
42742433--42742461	14	2.0	15	93	6	51	31	0	34	34	1.58
42742496--42742526	14	2.2	14	94	0	53	35	0	29	35	1.58
42742678--42742723	21	2.2	21	84	7	58	17	2	45	34	1.61
42744044--42744081	16	2.3	17	95	4	69	2	13	21	63	1.42
42747695--42747750	27	2.1	27	83	6	69	26	8	1	62	1.35
42747938--42748162	43	5.3	42	79	9	190	24	16	30	29	1.96
42747931--42748146	86	2.5	84	82	5	245	25	15	30	29	1.96
42747962--42748162	43	4.7	43	81	5	205	24	16	29	28	1.97
42754339--42754419	20	4.0	19	78	10	81	53	12	14	19	1.73
42756466--42756505	16	2.5	16	91	0	62	47	2	7	42	1.45
42756494--42756636	68	2.1	67	94	2	261	41	4	9	45	1.55
42756578--42756605	9	3.1	9	100	0	56	32	0	10	57	1.33
42761490--42761552	26	2.4	26	86	2	90	52	0	1	46	1.10
42763477--42763513	20	2.0	20	84	10	51	0	13	2	83	0.74
42764544--42764586	10	4.2	10	80	13	52	72	0	6	20	1.08
42764557--42764613	17	3.3	17	80	7	62	77	0	5	17	0.95
42764552--42764613	12	5.4	12	81	14	53	77	0	4	17	0.94
42765187--42765225	19	2.1	19	95	0	69	38	17	15	28	1.91
42769287--42769327	22	2.0	20	90	9	64	21	14	19	43	1.87
42774232--42774289	22	2.7	21	82	12	64	29	20	17	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42774812--42774944	68	2.0	68	84	3	178	43	3	9	44	1.51
42786689--42786728	21	2.0	21	90	5	64	20	20	22	37	1.94
42788979--42789056	22	3.6	22	91	3	131	33	7	5	53	1.51
42791920--42792002	40	2.1	40	97	0	157	43	15	13	27	1.84
42792183--42792244	30	2.1	29	81	6	70	38	0	4	56	1.21
42792614--42792654	7	5.7	7	97	2	73	56	0	0	43	0.99
42792728--42792762	18	1.9	17	88	11	52	42	5	0	51	1.25
42796099--42796154	21	2.7	21	85	0	76	21	33	30	14	1.93
42804039--42804133	47	2.0	47	97	0	181	34	8	20	36	1.83
42809209--42809253	21	2.1	21	100	0	90	35	13	20	31	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205