genome.fa.s19.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  119  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35795820--35795897	40	1.9	41	82	10	97	26	28	20	24	1.99
35801579--35801609	12	2.6	12	100	0	62	25	16	12	45	1.83
35801670--35801719	6	8.2	6	81	16	50	2	20	2	76	0.99
35801659--35801729	37	1.9	37	86	11	101	2	18	2	76	1.04
35801655--35801715	16	3.8	16	77	14	63	3	19	1	75	1.03
35802671--35802709	13	3.0	13	85	7	53	12	5	7	74	1.20
35804209--35804498	90	3.2	90	100	0	580	38	17	15	28	1.90
35807309--35807333	13	1.9	13	100	0	50	36	16	32	16	1.90
35808809--35808872	18	3.7	18	70	16	55	62	1	29	6	1.29
35810344--35810385	17	2.5	17	88	0	57	19	35	19	26	1.95
35813892--35813943	23	2.3	22	75	21	54	9	23	1	65	1.32
35817713--35817764	23	2.3	22	75	21	54	11	21	1	65	1.34
35817758--35817796	18	2.2	18	90	0	60	12	20	2	64	1.40
35829148--35829240	45	2.1	44	92	6	152	36	25	4	33	1.76
35829222--35829293	16	4.5	16	83	0	99	27	26	5	40	1.78
35842560--35842593	17	2.0	17	88	0	50	32	20	14	32	1.93
35845986--35846027	15	2.7	15	92	3	66	50	19	14	16	1.79
35850583--35850632	25	2.0	24	84	3	64	18	26	22	34	1.96
35850768--35850824	25	2.3	25	84	6	80	21	26	19	33	1.97
35852824--35852911	25	3.6	25	70	13	74	22	29	20	27	1.99
35853936--35853968	12	2.8	12	90	0	57	18	21	48	12	1.80
35859492--35859574	42	2.0	42	90	0	130	22	26	36	14	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35860184--35860227	17	2.6	17	96	0	79	20	40	15	22	1.90
35860754--35860815	19	3.2	18	84	15	56	72	1	14	11	1.19
35860771--35860819	11	4.6	11	78	21	52	73	0	14	12	1.10
35862215--35862376	80	2.0	80	85	2	218	29	12	9	47	1.74
35862931--35862973	14	3.1	14	80	3	52	62	2	0	34	1.08
35871128--35871168	19	2.1	20	86	4	57	31	9	2	56	1.45
35871339--35871381	19	2.3	19	88	4	70	44	9	0	46	1.35
35871339--35871381	9	4.7	9	88	5	68	44	9	0	46	1.35
35871327--35871381	28	1.9	28	88	3	83	47	9	0	43	1.35
35871838--35871981	76	1.9	76	85	2	200	29	20	20	30	1.97
35879223--35879274	25	2.1	26	89	7	81	59	7	0	32	1.26
35884217--35884268	24	2.2	24	92	0	86	51	9	1	36	1.46
35884927--35884967	19	2.3	18	88	12	66	39	2	4	53	1.35
35885069--35885125	29	2.0	29	86	6	80	40	17	12	29	1.86
35888520--35888674	37	4.0	37	80	12	177	27	20	15	36	1.93
35888596--35888814	52	4.5	46	87	7	267	26	22	15	35	1.93
35888635--35888808	52	3.3	52	91	1	276	25	23	14	36	1.93
35894121--35894159	11	3.0	14	78	21	57	30	0	0	69	0.89
35894093--35894490	26	15.1	26	71	13	226	29	7	3	59	1.42
35894344--35894392	22	2.3	22	86	10	66	28	4	4	63	1.31
35894443--35894491	24	2.1	23	88	3	71	28	10	4	57	1.50
35904314--35904349	19	1.9	20	88	11	58	63	0	0	36	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35904317--35904363	19	2.3	21	78	14	53	59	4	2	34	1.29
35904684--35904717	8	4.4	8	88	7	52	23	0	0	76	0.79
35904679--35904717	15	2.5	15	87	4	51	25	0	0	74	0.82
35905975--35906025	22	2.3	22	96	3	93	27	23	7	41	1.82
35905980--35906031	22	2.2	24	86	13	72	28	23	7	40	1.82
35915028--35915062	15	2.4	14	90	4	52	71	0	2	25	1.00
35916148--35916261	55	2.1	55	98	0	219	43	8	14	32	1.77
35917917--35918009	43	2.1	43	84	2	114	26	16	25	31	1.96
35922248--35922369	41	2.9	42	78	8	122	28	17	12	41	1.85
35922275--35922380	40	2.5	40	83	7	104	25	17	15	41	1.89
35925790--35925840	18	2.9	18	79	2	59	80	5	5	7	1.02
35927237--35927313	35	2.2	35	81	9	86	68	2	9	19	1.28
35933783--35933836	25	2.3	25	75	18	62	53	7	3	35	1.47
35934492--35934559	31	2.2	31	100	0	136	58	2	10	27	1.45
35940780--35940804	4	6.2	4	100	0	50	24	0	0	76	0.80
35940892--35940980	24	3.5	25	76	14	101	29	3	1	66	1.15
35941014--35941074	3	20.3	3	89	0	50	36	9	0	54	1.34
35946095--35946137	6	7.2	6	82	10	52	76	0	20	2	0.89
35947035--35947242	45	4.7	45	75	4	190	30	20	22	26	1.98
35947035--35947245	89	2.4	89	83	3	255	30	20	21	27	1.98
35947035--35947300	89	3.0	89	78	3	205	31	20	21	26	1.98
35947165--35947758	143	4.2	143	86	2	768	30	20	21	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35947170--35947758	286	2.1	286	88	1	871	30	20	21	27	1.98
35947820--35948027	45	4.7	45	81	4	215	30	20	23	25	1.98
35949650--35949684	3	11.7	3	93	0	61	31	0	2	65	1.07
35951538--35951577	21	1.9	22	85	10	57	57	0	17	25	1.40
35952025--35952055	9	3.4	9	90	0	53	38	22	12	25	1.90
35952869--35952931	32	2.1	29	85	8	81	38	0	3	58	1.14
35953297--35953354	24	2.4	23	88	5	80	55	0	3	41	1.17
35956929--35956953	6	4.2	6	100	0	50	68	0	16	16	1.22
35959294--35959473	92	2.0	92	87	2	263	43	8	23	23	1.82
35961490--35961539	21	2.4	21	96	0	91	46	10	18	26	1.80
35962065--35962110	22	2.1	21	84	15	58	15	6	4	73	1.19
35965527--35965628	30	3.4	30	82	4	127	26	19	25	28	1.99
35965493--35965628	59	2.3	60	85	5	186	27	21	24	26	1.99
35965497--35965628	30	4.4	30	77	3	115	28	21	24	25	1.99
35968240--35968294	21	2.6	22	82	8	78	32	3	0	63	1.12
35968464--35968507	22	2.1	20	84	12	61	52	2	0	45	1.13
35968571--35968617	20	2.5	19	87	12	71	59	0	0	40	0.97
35968695--35968756	25	2.4	26	76	15	67	75	4	4	14	1.13
35973848--35973913	35	1.9	34	87	9	98	51	1	7	39	1.40
35975116--35975159	19	2.3	20	85	14	58	52	0	22	25	1.48
35981029--35981081	26	1.9	28	85	11	74	33	18	24	22	1.97
35991540--35991592	27	2.0	27	96	0	97	18	22	30	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35991440--35991667	102	2.2	102	96	0	420	20	20	28	31	1.97
35991604--35991738	42	3.4	41	76	17	160	22	17	27	33	1.96
35991567--35991745	75	2.4	75	94	0	304	21	18	27	32	1.96
35991643--35991846	102	2.0	101	92	0	336	20	20	27	31	1.97
35991719--35991771	27	2.0	26	92	3	88	15	22	32	30	1.94
35991464--35991877	177	2.3	177	94	0	711	21	19	27	31	1.97
35993996--35994060	29	2.4	26	81	16	87	46	4	0	49	1.22
36001937--36002133	27	7.7	27	64	31	105	54	1	13	29	1.48
36001964--36002174	48	4.3	48	66	16	137	55	0	13	29	1.45
36001856--36002173	75	4.2	75	95	1	539	54	1	14	29	1.48
36002343--36002383	19	2.2	19	86	8	57	63	0	7	29	1.21
36002379--36002408	12	2.6	12	94	5	53	43	0	30	26	1.55
36002379--36002457	5	14.6	5	72	15	50	55	0	21	22	1.43
36002379--36002455	11	7.0	11	80	5	66	55	0	20	23	1.43
36002379--36002457	16	4.8	16	76	3	68	55	0	21	22	1.43
36004387--36004668	53	5.3	53	80	6	279	29	13	21	35	1.92
36004419--36004666	53	4.7	52	80	9	288	29	12	22	35	1.90
36004419--36004675	106	2.4	107	84	6	319	30	12	21	35	1.91
36014751--36014957	20	10.4	19	68	12	78	14	31	19	34	1.92
36014808--36014957	60	2.5	60	84	1	212	12	32	19	36	1.89
36016977--36017079	42	2.4	43	80	1	118	26	18	23	32	1.97
36016977--36017091	43	2.7	42	78	9	117	25	18	25	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36023094--36023118	8	3.1	8	100	0	50	24	0	0	76	0.80
36029966--36030107	44	3.2	44	89	2	214	27	16	26	29	1.97
36032420--36032706	102	2.8	99	79	6	319	43	12	9	34	1.75
36035471--36035597	62	2.0	62	95	0	227	28	11	17	42	1.84
36036176--36036212	14	2.8	14	88	8	51	10	0	40	48	1.38
36036341--36036492	51	3.2	47	66	16	116	43	3	16	36	1.64
36036333--36036647	94	3.4	94	83	7	398	40	3	18	37	1.69
36036684--36036969	126	2.3	126	92	1	475	31	19	23	25	1.98
36037087--36037140	17	2.9	18	81	8	56	42	7	1	48	1.42
36039520--36039631	11	10.6	11	74	13	94	45	1	29	23	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205