genome.fa.s19.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  35  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10489982--10490027	24	1.9	24	91	8	76	39	0	10	50	1.38
10495424--10495824	222	1.8	222	82	1	516	23	38	18	19	1.93
10496823--10496870	20	2.4	21	75	10	55	64	0	25	10	1.25
10496860--10496892	14	2.4	14	85	5	50	78	0	9	12	0.95
10497291--10497406	60	1.9	61	92	1	198	55	0	5	39	1.22
10500676--10500720	22	2.0	22	91	0	72	33	31	8	26	1.87
10507474--10507515	9	4.7	9	80	8	50	71	0	2	26	0.98
10510866--10510937	27	2.6	27	82	4	72	23	9	26	40	1.85
10525774--10525835	26	2.3	27	94	2	108	37	4	25	32	1.77
10540777--10540849	28	2.6	28	80	2	74	21	21	30	26	1.99
10540867--10541234	181	2.0	181	96	0	673	26	20	21	31	1.98
10541196--10541257	23	2.8	22	77	2	70	35	17	17	29	1.93
10541413--10541460	18	2.5	20	83	10	64	68	0	2	29	1.01
10545627--10545664	19	2.0	19	89	0	58	18	0	10	71	1.14
10545837--10545900	31	2.0	31	84	3	83	56	9	17	17	1.66
10548396--10548431	8	4.5	8	96	0	63	36	0	0	63	0.94
10549443--10549493	26	2.0	26	84	7	68	47	0	0	52	1.00
10550007--10550039	14	2.3	15	89	5	50	69	3	0	27	1.03
10551360--10551454	22	4.5	23	70	23	66	34	0	3	62	1.11
10559300--10559342	24	1.9	21	86	13	59	41	0	0	58	0.98
10559666--10559699	17	2.0	17	88	0	50	58	0	0	41	0.98
10559653--10559696	23	1.9	23	81	9	54	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10562956--10563014	28	2.1	28	96	0	109	44	20	22	13	1.86
10574612--10574648	3	12.3	3	100	0	74	32	0	35	32	1.58
10575961--10576001	19	2.1	20	86	4	57	53	9	17	19	1.70
10575979--10576036	11	5.3	11	79	6	55	60	5	18	15	1.53
10575979--10576026	23	2.1	23	88	0	69	60	4	18	16	1.51
10578001--10578107	43	2.5	43	78	1	108	28	16	28	26	1.97
10578915--10579074	69	2.3	69	90	0	248	28	17	15	38	1.90
10614158--10614208	18	2.8	18	79	5	59	54	11	0	33	1.37
10615954--10616054	27	3.7	27	79	0	94	31	13	27	26	1.94
10625513--10625572	26	2.3	26	82	5	68	23	23	20	33	1.97
10628823--10628866	18	2.5	17	82	10	52	61	0	0	38	0.96
10628830--10628941	29	3.8	29	70	10	84	60	1	4	33	1.27
10629041--10629287	85	2.9	85	82	6	257	33	11	17	38	1.85
10629976--10630007	5	6.4	5	100	0	64	18	18	0	62	1.33
10634232--10634417	41	4.5	41	93	0	291	29	19	26	24	1.98
10636598--10636923	46	7.6	46	81	14	378	28	22	15	34	1.94
10636733--10636878	36	3.8	36	78	16	166	28	21	13	37	1.90
10636687--10636923	82	2.9	82	92	2	388	29	21	13	35	1.92
10636815--10636887	36	2.0	36	89	5	112	26	21	13	38	1.91
10636598--10636923	128	2.5	131	80	14	385	28	22	15	34	1.94
10643292--10643448	63	2.5	64	83	7	178	43	2	13	40	1.57
10643292--10643427	64	2.1	65	84	9	174	43	2	14	39	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10644091--10644276	41	4.5	41	93	0	300	27	18	29	24	1.98
10653559--10653631	26	2.8	25	83	6	83	26	19	12	42	1.86
10658113--10658307	73	2.6	73	89	2	300	43	6	10	40	1.64
10658264--10658373	54	2.0	56	83	3	143	49	3	10	37	1.54
10660104--10660434	163	2.0	163	98	0	646	33	16	13	36	1.87
10664843--10664899	29	1.9	30	85	3	80	38	7	15	38	1.75
10669045--10669155	54	2.1	54	98	0	213	41	22	12	23	1.88
10670616--10670665	24	2.0	25	88	11	77	36	0	2	62	1.07
10670762--10670801	18	2.4	17	87	8	55	50	7	5	37	1.53
10670862--10670903	16	2.6	16	88	0	57	40	4	4	50	1.45
10675856--10675944	43	2.1	43	89	0	133	33	14	33	17	1.91
10689973--10689999	11	2.5	11	100	0	54	18	0	0	81	0.69
10690468--10690543	29	2.5	30	82	4	82	50	13	17	19	1.78
10691872--10691910	13	3.2	12	86	13	53	74	7	2	15	1.15
10692345--10692383	21	1.9	20	84	5	51	56	5	5	33	1.43
10693758--10694176	44	9.8	42	71	15	198	27	22	19	30	1.98
10706740--10706789	23	2.2	23	86	10	68	64	4	2	30	1.23
10706951--10706998	23	2.0	25	92	8	82	75	2	0	22	0.91
10713392--10713473	41	2.0	42	90	4	123	37	6	24	30	1.80
10714216--10714428	102	2.1	101	87	0	300	27	23	14	34	1.93
10721424--10721464	18	2.3	18	86	0	55	68	2	0	29	1.03
10734125--10734230	19	5.6	19	78	8	92	68	0	4	26	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10734125--10734242	29	4.1	29	77	12	111	68	0	4	27	1.08
10734131--10734247	58	2.0	58	86	6	166	66	0	4	29	1.10
10734125--10734241	10	12.0	10	69	14	57	69	0	4	26	1.07
10734445--10734498	10	5.6	10	78	8	67	35	1	0	62	1.06
10734445--10734499	19	2.8	20	89	5	78	34	1	0	63	1.05
10734525--10734694	88	1.9	89	85	4	238	30	8	18	42	1.80
10735383--10735413	11	2.8	11	90	0	53	32	0	0	67	0.91
10735535--10735597	30	2.1	30	93	0	108	57	14	4	23	1.56
10735627--10735669	22	2.0	22	85	0	59	60	6	9	23	1.51
10735635--10735673	11	3.5	11	82	0	51	61	5	10	23	1.48
10739913--10739990	20	3.9	19	70	8	66	57	3	0	38	1.17
10741517--10741555	15	2.6	15	88	8	53	12	0	33	53	1.39
10741619--10741727	34	3.3	33	82	8	132	42	0	11	45	1.41
10741787--10742055	126	2.1	126	88	1	387	37	16	16	29	1.91
10744941--10744981	20	2.0	20	90	0	64	2	17	43	36	1.62
10747022--10747086	30	2.2	30	91	0	103	40	3	29	27	1.71
10747907--10747971	33	2.0	33	96	0	121	43	21	13	21	1.87
10764799--10764849	22	2.3	21	87	12	75	27	19	11	41	1.86
10766102--10766163	31	2.0	31	93	0	106	40	4	14	40	1.67
10766239--10766263	3	8.3	3	100	0	50	64	0	0	36	0.94
10767450--10767491	10	4.2	10	79	11	50	35	0	2	61	1.09
10767450--10767526	20	3.9	20	68	13	61	38	1	3	55	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10767458--10767526	29	2.4	29	75	4	68	40	1	4	53	1.30
10767610--10767656	14	3.5	14	80	11	62	55	2	8	34	1.42
10767610--10767656	13	3.5	13	83	13	60	55	2	8	34	1.42
10767953--10768129	73	2.4	73	80	3	214	19	14	18	48	1.82
10773180--10773223	14	2.8	16	86	10	56	31	0	4	63	1.14
10775601--10775646	19	2.3	20	96	3	85	23	10	17	47	1.79
10775722--10775764	18	2.4	18	96	0	77	46	2	0	51	1.13
10778521--10778565	14	3.4	14	72	27	53	51	6	40	2	1.41
10780912--10781207	103	2.8	103	82	6	310	32	18	18	30	1.95
10780995--10781218	103	2.2	103	87	1	324	32	19	18	29	1.96
10781219--10781588	108	3.5	106	86	4	521	33	17	19	28	1.95
10781602--10781833	110	2.1	109	88	4	340	37	16	14	30	1.89
10790556--10790607	21	2.5	21	90	0	77	28	28	13	28	1.94
10792770--10792814	17	2.3	21	75	21	53	48	2	0	48	1.13
10797294--10797346	15	3.5	15	68	0	52	43	30	3	22	1.71
10797434--10797515	30	2.7	30	100	0	164	53	20	4	20	1.64
10800138--10800193	18	3.0	18	66	19	51	50	19	7	23	1.72
10800141--10800203	20	3.2	20	68	17	60	52	20	6	20	1.68
10800118--10800206	38	2.3	38	94	0	160	49	20	7	22	1.74
10800872--10800924	22	2.5	20	77	22	54	37	0	0	62	0.96
10800878--10800922	24	1.9	23	82	13	56	40	0	0	60	0.97
10801492--10801526	17	2.0	18	88	5	54	62	5	0	31	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10805375--10805664	152	1.9	152	99	0	571	30	18	16	34	1.94
10811457--10811500	4	10.5	4	82	7	52	68	4	4	22	1.27
10811518--10811548	16	1.9	16	93	0	53	32	9	22	35	1.87
10813634--10813676	21	2.0	21	95	0	77	32	16	2	48	1.58
10815628--10815662	15	2.4	14	86	9	52	74	2	0	22	0.95
10815740--10815786	19	2.4	19	75	10	51	51	4	2	42	1.33
10824158--10824209	26	2.0	25	82	10	61	57	3	3	34	1.35
10824177--10824217	18	2.3	18	95	0	73	63	4	0	31	1.15
10824703--10824738	18	1.9	19	88	5	56	38	0	0	61	0.96
10826146--10826195	15	2.9	17	80	17	50	54	0	4	42	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205