genome.fa.s19.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  116  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34993658--34993708	23	2.2	24	82	10	61	64	1	23	9	1.34
34993811--34993860	16	3.1	16	71	23	50	54	6	26	14	1.63
34993789--34993860	33	2.2	33	85	5	92	52	6	27	12	1.64
34997848--34997901	21	2.5	22	82	8	58	53	9	9	27	1.63
35001056--35001107	19	2.8	18	74	8	50	75	5	3	15	1.14
35001088--35001120	16	2.0	17	88	5	50	69	3	0	27	1.03
35004967--35005015	21	2.3	21	79	6	55	18	16	28	36	1.92
35006417--35006561	50	2.9	49	80	4	164	28	22	26	21	1.99
35009669--35009693	13	1.9	13	100	0	50	56	28	0	16	1.41
35016044--35016079	11	3.4	10	92	3	54	11	2	0	86	0.68
35025521--35025584	31	2.1	31	96	0	119	39	6	6	48	1.54
35025968--35026048	28	2.9	28	77	0	90	33	25	20	19	1.97
35026392--35026632	27	8.9	26	82	8	136	18	21	18	41	1.90
35026391--35026642	54	4.7	54	84	3	303	19	20	18	42	1.90
35026419--35026642	81	2.8	81	88	0	331	19	20	17	41	1.90
35030662--35030708	21	2.2	21	96	0	85	21	14	10	53	1.71
35035310--35035357	17	2.9	17	78	3	53	20	10	12	56	1.65
35055505--35055549	17	2.6	17	92	0	72	33	8	15	42	1.78
35056282--35056350	35	2.0	35	88	0	102	39	20	11	28	1.87
35059429--35059460	3	10.7	3	93	0	55	37	0	62	0	0.95
35059475--35059530	20	2.8	21	76	15	64	69	1	26	1	1.08
35059651--35059687	15	2.4	16	82	17	51	27	0	10	62	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35059613--35059917	56	5.4	56	100	0	610	35	3	11	50	1.54
35059707--35059743	15	2.4	16	82	17	51	27	0	10	62	1.28
35059763--35059799	15	2.4	16	82	17	51	27	0	10	62	1.28
35059819--35059855	15	2.4	16	82	17	51	27	0	10	62	1.28
35059875--35059911	15	2.4	16	82	17	51	27	0	10	62	1.28
35062772--35062813	8	5.4	8	80	5	50	26	0	23	50	1.50
35063550--35063609	26	2.3	26	80	11	70	60	10	6	23	1.52
35065268--35066114	159	5.3	159	92	3	1400	29	8	8	53	1.60
35066278--35066424	30	5.4	30	78	17	144	61	8	5	23	1.46
35066301--35066359	12	4.8	12	85	8	82	67	8	0	23	1.17
35066301--35066362	20	3.2	20	78	15	67	67	8	0	24	1.17
35066262--35066392	38	3.4	37	78	18	144	62	7	3	25	1.39
35066659--35066767	3	36.3	3	70	14	73	0	34	1	62	1.12
35069949--35070172	113	2.0	114	94	1	396	34	19	9	36	1.84
35070221--35070267	6	7.7	6	90	4	76	38	12	0	48	1.41
35070221--35070271	18	2.8	18	90	3	84	39	11	0	49	1.40
35072303--35072344	21	2.0	21	85	0	57	19	7	14	59	1.57
35073700--35073747	19	2.6	18	75	21	53	68	2	8	20	1.26
35073933--35073999	8	8.4	8	75	14	50	53	1	5	38	1.34
35074101--35074198	3	32.7	3	89	0	70	53	11	0	35	1.37
35077553--35077816	40	6.7	40	89	5	360	25	21	27	25	1.99
35077553--35077849	119	2.5	118	81	9	338	26	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35081902--35081963	31	2.0	31	96	0	115	32	11	12	43	1.79
35081904--35081974	31	2.3	30	88	9	106	30	11	14	43	1.80
35082491--35082515	11	2.3	11	100	0	50	44	0	8	48	1.32
35087452--35087513	32	2.0	31	84	9	81	46	4	6	41	1.51
35089173--35089203	15	2.1	14	94	5	53	54	0	9	35	1.33
35096306--35096608	27	11.3	27	84	3	360	41	21	16	19	1.90
35096306--35096608	54	5.6	54	85	4	398	41	21	16	19	1.90
35097503--35097528	3	8.7	3	100	0	52	69	30	0	0	0.89
35098461--35098558	21	4.7	21	79	14	67	38	17	7	36	1.77
35098461--35098518	22	2.6	22	81	7	64	41	17	5	36	1.72
35098497--35098571	19	3.8	19	93	6	132	34	17	10	37	1.84
35099499--35099991	44	11.4	44	87	5	724	29	27	16	25	1.97
35099547--35099611	34	1.9	34	90	0	103	27	26	23	23	2.00
35105811--35106230	212	2.0	211	100	0	831	40	17	12	30	1.86
35106673--35106732	3	20.0	3	92	0	102	66	0	1	31	1.01
35106911--35106953	23	1.9	23	95	4	79	55	2	9	32	1.44
35107648--35107705	22	2.6	22	84	7	73	41	17	5	36	1.72
35107661--35107739	21	3.8	19	79	12	68	37	17	8	35	1.81
35107695--35107738	21	2.1	21	95	0	79	38	15	9	36	1.80
35109399--35109738	43	7.9	43	93	0	554	30	27	20	22	1.98
35110053--35110107	21	2.6	21	88	0	74	5	43	16	34	1.71
35110154--35110194	21	2.0	21	85	0	55	9	41	12	36	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35110089--35110254	87	1.9	87	88	4	255	13	30	16	40	1.86
35115781--35115822	16	2.7	15	85	7	66	40	0	14	45	1.45
35115923--35116297	16	23.9	17	67	22	111	38	2	13	45	1.57
35115922--35116080	50	3.3	50	72	18	174	37	3	13	45	1.61
35115942--35116154	43	5.1	41	67	16	109	38	2	12	46	1.57
35115866--35116081	93	2.3	93	93	1	364	39	3	13	43	1.60
35115947--35116205	124	2.1	124	94	1	448	38	2	13	45	1.57
35115847--35116298	217	2.1	215	92	3	746	38	2	13	45	1.57
35116096--35116339	50	5.4	44	72	18	191	39	2	12	46	1.53
35116064--35116338	93	3.0	93	92	3	477	39	1	12	46	1.53
35116109--35116268	53	3.3	53	70	21	184	38	2	12	46	1.55
35116159--35116214	9	6.8	9	71	19	50	37	0	16	46	1.47
35115922--35116298	31	12.1	30	68	24	189	38	2	12	45	1.57
35116588--35116623	15	2.5	15	90	4	56	63	8	16	11	1.49
35118443--35118492	24	2.1	24	85	7	66	28	4	0	68	1.08
35119499--35119726	74	3.1	73	93	1	384	36	18	15	28	1.92
35120804--35121000	82	2.4	81	80	9	195	28	25	26	19	1.99
35120804--35121021	41	5.3	41	74	13	164	29	25	25	19	1.99
35120870--35121021	82	1.9	82	82	8	193	31	25	25	17	1.97
35121125--35121215	41	2.2	40	86	7	121	15	24	24	36	1.94
35121207--35121231	12	2.1	12	100	0	50	32	36	24	8	1.84
35121444--35121507	33	1.9	33	100	0	128	40	9	15	34	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35123626--35123686	11	5.5	11	70	18	54	45	11	3	39	1.57
35125759--35125798	7	5.7	7	84	0	53	47	32	0	20	1.50
35125766--35125805	21	1.9	21	94	0	71	50	32	0	17	1.47
35126619--35126993	185	2.0	185	96	0	687	17	29	5	47	1.71
35131003--35131120	42	2.8	42	92	0	191	33	23	21	21	1.97
35131094--35131392	42	7.1	41	90	5	379	21	22	21	34	1.97
35131094--35131392	125	2.4	125	88	2	429	21	22	21	34	1.97
35131094--35131392	84	3.6	83	88	1	429	21	22	21	34	1.97
35133197--35133251	28	2.0	28	92	0	92	32	5	7	54	1.51
35134723--35134766	23	1.9	23	81	9	54	54	9	2	34	1.44
35134024--35134958	391	2.4	390	88	5	1349	41	23	4	30	1.74
35135494--35135757	113	2.3	114	88	2	379	31	29	18	20	1.96
35135645--35135842	95	2.1	95	91	0	315	33	26	16	24	1.96
35142388--35142808	140	3.0	140	92	0	707	36	25	17	20	1.94
35145465--35145499	15	2.4	15	90	4	54	48	0	8	42	1.33
35149408--35149466	23	2.6	23	87	10	86	44	18	3	33	1.67
35151431--35151476	20	2.3	20	82	10	58	54	8	6	30	1.56
35158883--35158912	16	1.9	16	93	6	53	50	20	0	30	1.49
35166354--35166618	40	6.7	40	85	5	286	26	27	21	24	1.99
35166321--35166618	80	3.7	80	79	9	263	25	27	21	25	1.99
35166550--35166627	40	1.9	41	82	10	97	26	28	20	24	1.99
35170366--35170454	45	2.0	45	93	0	151	33	24	16	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35170465--35170600	50	2.7	52	85	5	188	30	27	16	25	1.96
35173181--35173295	41	2.8	41	88	5	153	28	26	20	25	1.99
35181098--35181258	41	3.9	40	79	6	162	26	25	19	28	1.99
35184576--35184609	15	2.3	15	89	0	50	29	17	5	47	1.71
35185696--35185742	13	3.6	13	80	11	60	63	4	0	31	1.13
35185998--35186041	20	2.2	20	84	8	54	54	6	6	31	1.53
35190314--35190355	21	2.0	21	86	9	59	21	7	21	50	1.72
35193261--35193304	22	2.0	22	86	0	61	27	25	20	27	1.99
35194687--35194745	20	3.0	20	77	5	66	44	22	5	28	1.74
35194934--35195008	23	3.2	24	79	3	75	36	17	26	20	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205