genome.fa.s19.2.7.7.80.10.50.1000.188.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  188  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55863844--55863919	38	2.0	38	97	0	143	40	13	11	34	1.81
55864691--55864718	3	9.3	3	100	0	56	0	32	0	67	0.91
55869367--55869424	30	1.9	30	86	6	82	50	13	6	29	1.68
55872104--55872182	33	2.5	33	91	6	128	31	8	16	43	1.79
55872465--55872935	235	2.0	234	97	0	897	19	24	19	36	1.95
55879275--55879577	40	7.6	40	89	2	396	27	28	20	24	1.99
55893623--55893659	18	1.9	18	89	10	56	81	0	18	0	0.70
55893622--55893660	16	2.5	16	83	4	53	82	0	17	0	0.68
55904964--55904995	16	2.0	16	93	0	55	31	9	25	34	1.87
55918266--55918653	50	7.6	50	85	4	395	28	19	29	22	1.98
55919591--55919720	64	2.0	64	92	2	217	25	17	18	38	1.92
55919673--55919720	25	1.9	25	91	0	78	25	20	14	39	1.91
55922717--55923104	27	14.4	27	84	1	418	24	15	18	41	1.90
55922720--55923104	81	4.8	81	84	0	482	24	15	18	41	1.90
55929415--55929532	25	4.7	25	78	8	107	27	20	22	28	1.99
55932717--55932757	14	3.2	13	80	12	50	68	9	0	21	1.18
55932868--55932941	20	3.8	20	78	7	89	27	21	25	25	2.00
55932868--55932943	40	1.9	39	89	7	118	27	21	26	25	1.99
55937175--55937220	20	2.3	21	81	11	60	26	26	17	30	1.97
55937183--55937229	20	2.3	20	88	0	76	21	21	17	40	1.91
55938459--55938491	16	2.1	16	94	5	59	15	24	3	57	1.52
55946354--55946512	49	3.2	49	100	0	318	28	29	10	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55954542--55954580	20	2.0	20	85	10	53	38	17	10	33	1.84
55955130--55955160	16	1.9	16	93	0	53	25	9	35	29	1.88
55955339--55955390	23	2.2	25	83	13	74	32	46	5	15	1.70
55958140--55958181	20	2.0	20	82	13	50	54	19	2	23	1.55
55958796--55958839	22	2.0	22	100	0	88	54	4	22	18	1.61
55960994--55961037	21	2.1	21	83	8	54	63	2	9	25	1.35
55966016--55966053	19	2.0	19	100	0	76	21	21	21	36	1.95
55972737--55972789	27	2.0	27	88	0	79	58	9	3	28	1.47
55973402--55973454	13	3.9	14	81	13	58	1	15	1	81	0.87
55973394--55973456	32	2.0	32	87	6	92	1	17	1	79	0.89
55973405--55973448	19	2.3	19	88	7	63	2	13	2	81	0.88
55979562--55979629	34	2.0	34	97	0	127	23	20	19	36	1.95
55985269--55985611	40	8.6	40	90	2	451	27	28	20	24	1.99
55993289--55993460	40	4.3	40	88	2	222	25	27	21	25	1.99
55993291--55993513	40	5.6	39	83	5	216	25	27	21	25	1.99
55993289--55993513	80	2.8	79	80	7	240	25	27	21	25	1.99
55993445--55993522	40	1.9	41	82	10	97	26	28	20	24	1.99
56005221--56005248	14	2.0	14	100	0	56	50	0	7	42	1.30
56008775--56008905	44	3.1	42	67	16	101	45	6	3	43	1.48
56008773--56008923	82	1.8	82	87	2	223	46	6	3	43	1.48
56008896--56008935	17	2.3	18	82	8	55	52	0	2	45	1.14
56009089--56009141	26	2.0	27	81	3	63	43	9	1	45	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56009249--56009289	20	2.0	20	95	0	73	26	14	24	34	1.94
56009658--56009977	110	3.0	109	88	2	466	34	19	16	30	1.93
56011943--56012224	96	3.0	95	95	2	503	30	24	17	27	1.97
56012134--56012360	126	1.8	126	94	0	400	30	23	16	28	1.96
56012259--56012447	95	2.0	95	93	0	324	30	22	17	29	1.97
56012425--56012500	38	2.0	38	81	0	89	30	19	21	28	1.97
56012354--56012581	126	1.8	126	89	0	357	30	21	19	28	1.97
56011925--56012769	316	2.7	304	83	7	952	30	22	18	28	1.97
56012481--56012963	95	5.1	95	88	1	711	30	22	17	29	1.97
56012040--56012674	221	2.9	221	92	0	1027	30	22	17	28	1.97
56012954--56013444	88	5.6	88	92	0	784	25	24	22	27	2.00
56013000--56013398	44	9.1	44	67	17	222	25	24	23	27	2.00
56014505--56014550	21	2.2	21	84	0	56	26	36	10	26	1.89
56014637--56014675	5	7.2	6	78	21	50	0	15	0	84	0.62
56014639--56014674	10	3.5	10	96	3	63	0	11	0	88	0.50
56014637--56014675	16	2.4	17	87	12	64	0	15	0	84	0.62
56018401--56018721	111	2.9	110	86	5	429	35	18	15	30	1.92
56019066--56019112	3	16.0	3	87	12	71	65	0	2	31	1.04
56019736--56019762	12	2.2	12	100	0	54	44	0	7	48	1.31
56022330--56022418	25	3.8	24	70	22	80	46	0	2	51	1.13
56022790--56022857	32	2.1	33	81	13	79	45	5	5	42	1.52
56023155--56023222	29	2.3	30	81	16	81	26	1	10	61	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56024578--56024607	15	2.0	15	93	0	51	33	3	3	60	1.30
56040124--56040282	80	2.0	80	91	0	255	37	21	8	32	1.84
56043862--56043886	13	1.9	13	100	0	50	44	0	0	56	0.99
56043881--56043913	14	2.4	14	100	0	66	54	0	12	33	1.37
56044836--56044882	20	2.3	21	88	3	69	63	2	4	29	1.25
56044843--56044886	21	2.3	19	79	20	56	63	0	4	31	1.14
56044977--56045031	27	2.2	25	81	12	60	54	5	1	38	1.34
56045104--56045144	21	2.0	20	95	4	73	63	0	0	36	0.95
56045108--56045160	25	2.1	25	86	6	72	67	1	1	28	1.11
56046781--56047722	44	21.8	44	69	11	322	26	19	21	33	1.97
56046924--56047200	85	3.2	82	68	17	204	26	17	21	34	1.96
56046883--56047244	173	2.1	172	88	3	541	27	18	20	33	1.96
56046749--56047548	129	6.2	127	79	8	441	26	19	21	32	1.97
56047310--56047721	173	2.4	173	84	4	465	25	20	21	32	1.97
56047483--56047769	129	2.2	128	83	6	339	26	20	21	31	1.98
56047812--56047935	50	2.5	50	85	2	142	24	27	21	26	1.99
56048832--56048865	17	2.0	17	94	0	59	0	17	2	79	0.86
56052618--56052749	26	5.2	26	74	14	114	62	6	4	27	1.39
56052687--56052735	21	2.3	21	85	3	62	65	2	4	28	1.22
56052907--56052973	25	2.7	26	83	6	84	62	4	2	29	1.29
56052918--56053001	25	3.7	21	76	16	78	65	2	2	29	1.18
56052939--56052990	21	2.5	21	87	6	70	65	1	3	28	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56054738--56054810	31	2.4	31	81	4	85	30	16	2	50	1.59
56062329--56062390	29	2.1	29	93	0	106	38	11	20	29	1.88
56063456--56063486	10	3.2	10	90	9	55	32	0	0	67	0.91
56063455--56063485	9	3.3	9	91	8	53	29	0	0	70	0.87
56064247--56064283	16	2.3	16	95	0	65	64	0	0	35	0.94
56068388--56068440	23	2.4	22	76	20	56	9	18	1	69	1.25
56074913--56074963	6	8.3	6	86	4	66	15	23	0	60	1.35
56078050--56078113	23	2.7	23	78	11	76	48	3	3	45	1.34
56085766--56085803	20	1.9	19	89	5	58	47	0	0	52	1.00
56089911--56089987	26	3.0	26	90	0	118	18	20	20	40	1.92
56090082--56090175	33	3.0	33	74	12	90	24	22	22	30	1.99
56090096--56090158	28	2.2	28	86	5	83	20	20	23	34	1.96
56094029--56094082	20	2.7	20	70	0	54	37	22	9	31	1.86
56094352--56094422	35	2.0	35	97	0	133	30	19	4	45	1.70
56097036--56097067	9	3.6	9	91	0	55	9	34	0	56	1.32
56102866--56102917	21	2.5	21	87	0	77	28	7	32	30	1.85
56108701--56108801	29	3.5	29	89	1	150	26	14	28	29	1.95
56111379--56111460	25	3.3	24	80	10	76	24	19	24	31	1.98
56113300--56113378	6	14.8	5	75	21	56	74	3	1	20	1.04
56113321--56113363	18	2.4	18	85	14	63	74	2	0	23	0.93
56113300--56113363	11	5.7	11	76	10	67	73	3	1	21	1.06
56113321--56113375	29	1.9	28	82	17	69	74	3	0	21	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56114753--56114804	21	2.3	23	83	9	63	67	3	9	19	1.35
56114965--56115068	9	11.9	9	73	10	65	68	0	8	23	1.17
56115004--56115071	8	8.1	8	78	4	64	69	0	5	25	1.11
56123182--56123447	28	9.5	28	95	0	453	34	26	11	27	1.91
56123896--56123925	14	2.1	14	93	0	51	40	0	10	50	1.36
56128207--56128321	41	2.8	42	76	6	110	30	22	17	29	1.97
56128467--56128578	31	3.6	31	74	4	111	42	16	12	28	1.84
56128518--56128730	31	6.9	31	71	13	127	42	17	7	31	1.79
56128676--56128958	82	3.5	82	95	0	494	43	17	5	33	1.71
56128585--56128958	164	2.2	168	87	4	531	42	17	6	33	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205