genome.fa.s19.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  120  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36039508--36039609	51	2.0	51	96	0	186	45	1	27	25	1.64
36040034--36040093	9	6.6	9	83	12	61	28	0	3	68	1.05
36040035--36040059	11	2.3	11	100	0	50	24	0	0	76	0.80
36055227--36055353	62	2.0	62	96	0	236	29	11	16	42	1.84
36056317--36056360	23	1.9	23	90	0	70	43	9	4	43	1.56
36060501--36060679	90	2.0	90	92	0	295	34	11	24	29	1.91
36061287--36061324	19	2.0	19	100	0	76	15	31	15	36	1.90
36076664--36076940	137	2.0	137	97	0	527	31	17	23	28	1.97
36081379--36081716	101	3.4	99	76	11	316	44	13	9	32	1.75
36083413--36083575	83	2.0	83	95	0	290	34	21	7	36	1.81
36085580--36085621	23	1.9	22	85	9	59	42	7	4	45	1.52
36085715--36085761	23	2.1	22	84	11	60	40	21	0	38	1.53
36087060--36087110	9	5.6	9	80	15	52	29	0	3	66	1.09
36087059--36087109	20	2.7	19	80	11	61	29	0	3	66	1.09
36094362--36094453	25	3.8	25	69	13	75	26	20	11	41	1.87
36097687--36097721	17	2.0	18	88	5	54	45	0	11	42	1.40
36110098--36110142	21	2.1	22	84	12	58	51	0	6	42	1.28
36110264--36110316	9	5.8	9	81	14	56	30	0	3	66	1.10
36110264--36110315	20	2.8	20	82	8	65	30	0	3	65	1.10
36110846--36110909	31	2.1	31	96	0	119	43	6	10	39	1.65
36114350--36114396	23	2.0	23	91	0	76	57	0	0	42	0.98
36123003--36123079	22	3.4	22	70	19	77	35	3	27	33	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36123001--36123090	46	2.0	45	97	2	171	35	3	25	35	1.73
36130595--36130654	15	4.3	13	87	10	50	58	1	3	36	1.25
36130617--36130659	3	14.3	3	100	0	86	67	0	0	32	0.91
36132439--36132682	44	5.6	44	66	6	127	26	21	19	32	1.97
36132355--36132666	132	2.4	132	87	0	435	27	22	18	31	1.97
36132355--36132753	132	3.0	130	80	4	388	27	22	19	31	1.98
36134036--36134070	10	3.4	10	84	7	52	8	0	5	85	0.73
36134058--36134150	47	2.0	48	89	2	143	15	18	18	48	1.81
36142994--36143178	40	4.7	40	78	7	182	24	21	27	25	1.99
36143049--36143201	79	1.9	79	81	7	186	26	19	27	26	1.99
36151178--36151360	79	2.3	81	84	7	232	24	22	27	25	2.00
36151179--36151362	40	4.6	40	83	9	216	23	22	28	25	2.00
36151231--36151395	79	2.1	79	84	6	210	25	21	27	25	1.99
36157244--36157627	192	2.0	192	94	1	671	28	26	19	26	1.98
36158157--36158224	16	4.2	16	96	0	118	27	0	36	35	1.58
36158205--36158299	45	2.1	44	88	1	136	34	5	27	32	1.79
36159699--36159942	44	5.6	44	66	6	127	26	21	19	32	1.97
36159615--36159926	132	2.4	132	87	0	435	27	22	18	31	1.97
36159615--36160013	132	3.0	130	80	4	388	27	22	19	31	1.98
36161296--36161330	10	3.4	10	84	7	52	8	0	5	85	0.73
36161318--36161410	47	2.0	48	89	2	143	15	18	18	48	1.81
36177311--36177363	23	2.3	23	93	0	88	28	28	20	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36180671--36180811	49	2.9	50	91	3	232	26	14	26	31	1.95
36183068--36183353	30	9.6	30	83	5	321	43	16	8	31	1.77
36183068--36183353	90	3.2	88	85	3	360	43	16	8	31	1.77
36183239--36183324	26	3.2	26	78	12	91	45	15	8	31	1.75
36185091--36185130	21	1.9	21	84	0	53	55	2	7	35	1.42
36185669--36185709	21	2.0	21	85	9	57	26	21	21	29	1.99
36189405--36189451	19	2.6	18	77	12	51	57	2	14	25	1.49
36193866--36193937	36	2.0	35	89	2	108	30	8	27	33	1.86
36195720--36195791	36	2.0	35	91	2	117	31	8	27	31	1.86
36200327--36200370	20	2.3	20	88	7	65	36	4	9	50	1.55
36204608--36204645	11	3.5	11	79	13	51	63	2	0	34	1.09
36208236--36208486	43	5.9	42	78	6	245	29	28	17	24	1.97
36208255--36208503	129	1.9	129	79	6	281	29	29	16	24	1.97
36212090--36212402	103	3.0	103	94	0	518	30	12	10	46	1.75
36213183--36213253	14	4.9	14	77	14	56	35	38	0	26	1.57
36213238--36213278	21	2.0	20	90	4	64	39	39	0	21	1.54
36213269--36213310	14	2.9	14	82	6	57	35	35	0	28	1.58
36213265--36213311	15	3.3	15	82	8	62	40	31	0	27	1.57
36213496--36213567	15	4.9	15	76	6	58	34	44	0	20	1.52
36213828--36213999	73	2.4	73	90	0	272	25	25	22	26	2.00
36213906--36214691	114	6.9	114	86	2	1040	26	27	21	23	1.99
36214591--36214735	74	2.0	74	87	2	211	25	24	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36218902--36218990	44	2.0	44	97	0	169	43	19	13	23	1.86
36220737--36220778	17	2.6	16	85	14	59	42	4	19	33	1.72
36220742--36220778	17	2.2	17	100	0	74	45	5	16	32	1.70
36220825--36220863	20	1.9	21	89	5	62	43	0	0	56	0.99
36220830--36220880	25	2.0	25	85	7	68	39	0	0	60	0.97
36221182--36221222	3	14.3	3	82	10	50	70	0	26	2	0.99
36221182--36221230	17	2.9	17	81	0	62	71	0	26	2	0.97
36221169--36221230	11	5.0	13	75	18	53	67	0	30	1	1.00
36221390--36221504	60	1.9	60	96	0	212	33	0	13	53	1.46
36221763--36221815	16	3.3	16	91	0	88	39	3	33	22	1.72
36225896--36226136	103	2.3	103	88	5	369	29	0	17	53	1.47
36228529--36228709	93	2.0	90	87	5	258	25	6	9	58	1.54
36228624--36228797	76	2.3	77	91	5	289	27	7	8	56	1.56
36238128--36238159	13	2.6	12	95	5	55	84	0	15	0	0.63
36238128--36238160	11	2.8	12	90	4	50	81	0	18	0	0.68
36238367--36238432	33	2.0	33	88	8	100	40	3	42	13	1.60
36244783--36244834	26	2.0	26	85	7	70	26	0	3	69	1.06
36250518--36250641	50	2.5	50	86	1	169	26	25	18	29	1.98
36250518--36250641	25	5.0	25	70	11	94	26	25	18	29	1.98
36258021--36258066	19	2.5	19	92	3	76	45	13	4	36	1.63
36258117--36258196	30	2.8	28	79	7	81	18	20	25	36	1.95
36258112--36258196	28	2.8	29	77	13	84	18	18	24	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36268369--36268395	12	2.2	12	100	0	54	51	0	0	48	1.00
36268352--36268444	30	3.1	28	77	10	87	40	2	4	52	1.33
36268354--36268435	31	2.7	30	81	5	94	40	1	3	54	1.26
36268381--36268436	29	1.9	29	85	7	78	37	0	7	55	1.27
36271532--36271559	13	2.2	13	100	0	56	14	35	25	25	1.93
36272667--36272707	21	2.0	21	81	18	50	21	26	19	31	1.97
36277554--36277622	37	1.9	35	88	5	102	59	4	4	31	1.37
36282693--36282811	44	2.7	42	78	14	125	22	17	27	31	1.97
36283157--36283287	43	3.0	42	79	6	145	23	17	26	32	1.97
36282344--36283274	465	2.0	465	99	0	1844	32	13	21	32	1.93
36286972--36287023	25	2.1	25	85	7	70	48	0	0	51	1.00
36294977--36295083	34	3.1	34	94	0	178	32	16	19	30	1.94
36295071--36295193	43	2.9	43	90	0	183	33	28	16	21	1.95
36295071--36295212	43	3.3	43	88	2	160	34	28	16	21	1.94
36295468--36295525	28	2.1	28	100	0	116	51	13	3	31	1.58
36298980--36299020	20	2.0	20	95	0	73	34	7	0	58	1.26
36299279--36299317	19	2.0	21	85	10	55	23	0	10	66	1.22
36299384--36299412	3	9.7	3	100	0	58	0	0	31	68	0.89
36300273--36300310	18	2.1	18	95	0	67	34	7	47	10	1.67
36305520--36305549	16	1.9	15	93	6	51	26	3	0	70	1.03
36306100--36306275	18	10.6	17	70	20	83	0	30	0	69	0.93
36306129--36306279	4	37.0	4	78	17	125	0	30	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36306063--36306230	39	4.7	34	79	15	139	0	29	0	70	0.92
36306103--36306270	39	4.2	40	82	14	206	0	29	0	69	0.93
36306319--36306388	27	2.6	27	88	4	106	15	27	28	28	1.96
36306319--36306397	27	2.9	27	84	0	104	16	27	27	27	1.97
36306455--36306502	26	1.9	25	91	8	80	47	0	8	43	1.33
36306747--36306852	40	2.7	40	85	5	151	21	24	23	30	1.99
36306893--36307126	40	5.9	38	81	5	198	30	18	19	31	1.96
36306892--36307127	81	3.0	81	83	5	275	30	19	19	30	1.96
36306904--36307151	40	6.2	38	76	12	173	29	20	18	31	1.97
36317285--36317320	14	2.3	17	86	13	51	50	0	16	33	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205