genome.fa.s19.2.7.7.80.10.50.1000.202.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  202  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59903004--59903055	19	2.7	20	82	5	63	46	11	17	25	1.81
59905289--59905331	22	2.0	22	90	0	68	58	0	6	34	1.25
59906127--59906160	17	2.1	17	88	5	52	5	8	44	41	1.60
59906201--59906248	18	2.5	20	77	19	57	4	4	39	52	1.40
59906478--59906529	24	2.2	24	85	0	68	53	9	1	34	1.45
59913233--59913257	11	2.3	11	100	0	50	76	8	0	16	1.02
59918500--59918535	5	7.2	5	90	9	56	77	0	0	22	0.76
59919622--59919646	11	2.3	11	100	0	50	76	8	0	16	1.02
59924825--59924850	13	2.0	13	100	0	52	30	23	0	46	1.53
59928299--59928340	15	2.8	15	92	0	66	61	14	0	23	1.32
59930266--59930370	45	2.3	45	80	9	124	22	20	26	30	1.98
59930304--59930718	217	1.9	219	85	3	577	28	21	19	30	1.97
59930966--59931592	131	4.8	131	92	1	1033	30	25	15	27	1.96
59930966--59931592	263	2.4	263	92	2	1053	30	25	15	27	1.96
59943292--59943326	15	2.3	15	95	0	61	62	14	0	22	1.31
59943695--59943743	24	2.1	23	80	3	62	67	4	2	26	1.19
59943701--59943747	24	2.0	24	91	0	76	65	2	2	29	1.15
59943714--59943761	24	2.0	24	84	8	62	66	4	2	27	1.21
59946915--59947000	42	2.0	42	93	0	145	46	17	12	23	1.82
59951237--59951302	34	1.9	34	87	0	96	56	3	10	30	1.49
59951420--59951471	19	2.9	18	75	13	54	36	0	1	61	1.07
59951610--59951646	15	2.4	16	82	13	51	40	0	2	56	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59952028--59952067	6	6.7	6	97	0	71	32	55	0	12	1.38
59953192--59953263	33	2.2	33	87	0	99	19	19	44	16	1.87
59958161--59958193	17	1.9	17	93	0	57	36	15	0	48	1.45
59960628--59960652	11	2.3	11	100	0	50	36	0	0	64	0.94
59971773--59972001	124	1.8	124	100	0	458	38	10	10	40	1.75
59974301--59974336	18	2.1	18	89	5	56	36	2	22	38	1.69
59977973--59978037	32	2.1	32	94	2	114	46	12	10	30	1.76
59980699--59980760	23	2.6	24	80	7	65	0	14	9	75	1.03
59980709--59980764	24	2.3	25	82	14	73	0	14	8	76	1.00
59980739--59980800	9	7.1	9	77	14	51	3	8	11	77	1.09
59981340--59981404	32	2.1	32	91	2	105	47	10	10	30	1.73
59983496--59983538	11	3.8	11	80	17	52	62	4	2	30	1.28
59983492--59983535	23	1.9	23	90	0	70	59	6	2	31	1.36
59984425--59984478	27	2.0	27	96	0	99	40	5	11	42	1.64
59988268--59988306	6	6.7	6	94	2	53	5	12	10	71	1.28
59990789--59990814	13	2.0	13	100	0	52	30	23	23	23	1.99
59998830--59998854	7	3.6	7	100	0	50	28	0	0	72	0.86
59999169--59999215	14	3.6	14	75	21	57	19	2	6	72	1.17
59999897--59999939	18	2.4	18	81	14	54	37	0	2	60	1.10
59999912--59999945	8	4.0	8	88	11	50	38	0	2	58	1.13
60004795--60004854	29	2.1	29	90	6	95	65	1	18	15	1.36
60005053--60005095	15	2.7	16	75	13	52	30	4	0	65	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60010957--60010994	20	1.9	20	89	10	60	44	13	2	39	1.57
60011617--60011654	20	1.9	20	84	10	51	57	0	2	39	1.12
60011672--60011783	9	12.0	9	69	19	61	60	4	4	30	1.36
60011953--60011991	19	2.1	19	90	9	62	28	2	5	64	1.28
60011956--60011998	19	2.3	19	84	8	52	30	2	4	62	1.28
60011992--60012036	19	2.3	19	84	3	63	22	11	2	64	1.36
60012032--60012077	19	2.3	20	81	3	58	32	0	2	65	1.05
60012030--60012077	10	4.9	10	79	5	53	33	0	2	64	1.05
60012197--60012465	87	3.1	88	81	4	247	32	10	18	37	1.86
60012197--60012466	88	3.1	87	81	4	276	32	10	18	37	1.86
60012485--60012542	23	2.6	23	77	2	73	51	1	5	41	1.34
60014083--60014129	22	2.1	22	100	0	94	23	14	38	23	1.92
60015883--60015933	22	2.2	24	83	13	63	58	1	1	37	1.20
60028772--60028800	6	4.8	6	100	0	58	34	17	0	48	1.47
60029228--60029351	62	2.0	62	100	0	248	29	8	20	41	1.81
60031501--60031922	140	3.0	140	97	0	790	30	17	15	36	1.91
60036555--60036715	33	4.6	33	80	13	196	32	26	19	20	1.97
60036483--60036715	108	2.1	109	92	0	378	32	26	19	21	1.97
60036663--60036743	33	2.8	29	85	12	96	32	30	20	16	1.95
60038001--60038150	77	1.9	77	89	5	232	30	20	8	40	1.82
60042195--60042250	21	2.7	21	85	0	76	42	14	25	17	1.87
60044778--60044870	45	2.1	45	87	0	132	32	18	8	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60044875--60044910	17	2.1	18	90	10	58	41	8	0	50	1.33
60052812--60052851	18	2.2	18	100	0	80	52	25	5	17	1.64
60056319--60056392	30	2.5	31	76	10	73	40	5	5	48	1.49
60056845--60056878	17	1.9	17	88	5	50	38	0	2	58	1.13
60057097--60057136	11	3.8	11	81	18	50	50	0	0	50	1.00
60058007--60058063	25	2.2	26	90	6	89	33	0	0	66	0.92
60058038--60058082	22	2.1	21	84	15	58	40	0	4	55	1.20
60058017--60058073	26	2.2	25	84	3	69	33	0	3	63	1.12
60064219--60064279	29	2.1	29	87	6	88	37	3	14	44	1.62
60076590--60076627	20	1.9	20	84	10	51	55	7	2	34	1.43
60079858--60079896	3	13.0	3	100	0	78	33	0	0	66	0.92
60084247--60084295	3	16.7	3	80	19	59	34	0	2	63	1.06
60084354--60084401	3	16.3	3	95	4	89	33	0	0	66	0.92
60086509--60086545	16	2.4	16	86	4	58	45	2	0	51	1.15
60089545--60089569	5	5.0	5	100	0	50	0	20	60	20	1.37
60089584--60089650	27	2.5	27	97	0	125	31	20	32	14	1.93
60089831--60089903	22	2.9	26	84	15	100	53	12	0	34	1.38
60090156--60090207	19	2.8	19	94	5	90	50	11	0	38	1.39
60090267--60090320	21	2.5	21	85	8	74	37	0	7	55	1.28
60089951--60090450	254	1.9	257	91	4	812	40	5	9	45	1.59
60090410--60090450	19	2.2	19	90	0	64	48	17	2	31	1.60
60090467--60090542	27	2.8	27	95	0	143	19	39	25	15	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60091755--60091807	17	3.1	17	84	10	72	79	3	3	13	1.01
60091761--60091817	11	5.1	11	82	16	64	80	5	1	12	0.95
60091761--60091817	23	2.5	22	78	18	64	80	5	1	12	0.95
60091755--60091813	6	10.2	6	78	14	61	79	3	3	13	0.98
60091755--60091813	17	3.4	17	79	11	66	79	3	3	13	0.98
60091964--60092097	27	4.8	28	74	11	107	58	0	7	33	1.26
60091928--60092104	6	29.5	6	80	2	140	59	0	7	32	1.26
60094494--60094544	2	25.5	2	100	0	102	50	0	49	0	1.00
60100958--60100996	18	2.2	17	86	13	53	33	0	20	46	1.51
60101225--60101320	23	4.2	23	87	0	138	21	16	29	32	1.96
60102884--60103003	51	2.4	51	94	2	215	35	14	23	27	1.93
60104798--60104847	25	2.0	25	96	0	91	24	8	18	50	1.73
60105301--60105420	51	2.4	51	94	2	215	35	14	23	27	1.93
60116651--60116695	6	7.5	6	94	0	63	37	0	62	0	0.96
60121972--60122233	135	1.9	135	87	3	386	37	13	13	35	1.84
60136220--60136847	69	9.1	69	78	0	563	20	23	18	38	1.93
60136212--60136847	207	3.1	206	77	3	666	20	22	18	38	1.93
60153630--60154197	142	4.0	141	90	1	830	32	16	21	29	1.95
60166086--60166140	28	2.0	28	96	0	101	40	10	16	32	1.83
60181084--60181217	19	6.7	21	78	10	77	40	14	6	38	1.72
60181084--60181141	22	2.6	22	81	7	64	41	17	5	36	1.72
60181120--60181230	19	5.8	19	89	0	177	37	13	9	39	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60181120--60181223	38	2.7	38	98	0	199	38	12	8	40	1.74
60181557--60182714	132	8.8	132	94	0	1998	28	23	18	28	1.98
60182088--60182542	44	10.4	43	64	9	125	28	24	18	28	1.98
60181557--60182714	527	2.2	528	94	0	2025	28	23	18	28	1.98
60184841--60184988	57	2.5	60	82	9	187	22	25	20	30	1.99
60191883--60191920	20	1.9	20	88	0	58	55	0	13	31	1.38
60191983--60192029	20	2.3	20	81	0	58	55	0	6	38	1.26
60191895--60192056	50	3.1	50	68	21	118	52	3	9	34	1.51
60191875--60192087	100	2.1	104	86	7	301	53	3	7	34	1.47
60193947--60193984	20	1.9	20	88	0	58	55	0	13	31	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205