genome.fa.s19.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  106  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31447063--31447150	27	3.3	27	76	4	90	29	20	15	34	1.94
31447065--31447284	54	4.1	54	81	4	241	23	20	19	36	1.95
31447078--31447274	27	7.3	27	78	3	164	23	20	21	35	1.96
31457930--31457974	22	2.0	22	83	8	56	40	24	4	31	1.75
31459430--31459599	45	3.8	44	82	5	171	41	14	22	21	1.89
31459432--31459600	90	1.9	90	81	2	205	40	14	23	21	1.89
31459676--31459776	27	3.7	27	77	2	96	38	16	25	18	1.92
31466138--31466402	40	6.7	40	85	5	286	26	27	21	24	1.99
31466105--31466402	80	3.7	80	79	9	263	25	27	21	25	1.99
31466334--31466411	40	1.9	41	82	10	97	26	28	20	24	1.99
31471769--31471896	32	4.0	32	81	0	157	39	21	19	19	1.93
31471931--31472003	27	2.7	27	83	6	87	32	24	23	19	1.97
31472068--31472125	24	2.4	24	91	0	98	46	24	8	20	1.78
31472152--31472376	27	8.3	27	70	4	123	23	21	17	38	1.93
31472203--31472352	81	1.8	82	82	4	196	23	21	16	38	1.93
31472217--31472423	27	7.7	27	74	6	145	21	19	19	39	1.93
31475965--31476029	22	3.0	22	77	4	60	43	18	21	16	1.88
31476021--31476127	32	3.4	32	77	2	101	37	22	21	18	1.94
31476271--31476351	24	3.4	24	84	1	101	48	24	4	22	1.70
31476389--31476542	27	5.7	27	78	5	96	27	20	16	36	1.93
31476373--31476705	81	4.1	80	80	7	250	25	19	16	37	1.93
31476469--31476705	27	8.8	27	83	2	264	24	18	17	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31481470--31481522	20	2.7	20	77	11	54	35	13	26	24	1.92
31484480--31484619	40	3.5	40	70	8	117	32	22	15	30	1.94
31485501--31485557	25	2.3	23	80	11	60	0	21	5	73	1.02
31492379--31492446	27	2.5	28	77	15	72	45	1	1	51	1.19
31494129--31494160	15	2.0	17	88	11	50	43	18	0	37	1.51
31496423--31496450	3	9.3	3	100	0	56	32	32	0	35	1.58
31500363--31500426	14	4.3	15	76	7	60	40	0	0	59	0.97
31500405--31500459	29	2.0	28	83	13	71	49	0	5	45	1.25
31500388--31500443	29	1.9	29	85	0	76	50	0	0	50	1.00
31501921--31502062	68	2.1	69	87	1	205	29	6	9	54	1.56
31502951--31503000	16	2.9	17	77	8	57	6	14	4	76	1.13
31511682--31511768	23	3.8	23	96	0	165	42	5	28	22	1.77
31512470--31513275	404	2.0	401	90	1	1272	42	15	15	26	1.87
31513534--31513573	20	2.0	20	85	5	53	22	30	12	35	1.91
31515287--31515427	40	3.3	41	72	12	124	60	5	2	30	1.34
31515334--31515397	33	1.9	33	87	6	94	64	6	1	28	1.27
31515565--31515617	20	2.7	21	82	8	58	32	0	5	62	1.19
31515553--31515602	19	2.7	19	75	6	50	36	0	4	60	1.16
31523364--31524750	132	10.5	132	90	1	1946	27	25	19	27	1.98
31527971--31528527	283	2.0	282	97	0	1051	22	26	20	29	1.98
31531715--31531743	15	1.9	15	100	0	58	89	0	0	10	0.48
31537793--31537837	19	2.4	19	85	7	56	33	2	2	62	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31541585--31541615	13	2.4	13	88	0	53	38	45	12	3	1.59
31541673--31541716	13	3.4	13	87	0	61	20	31	34	13	1.92
31542283--31542317	11	3.1	11	91	4	52	82	8	8	0	0.83
31543672--31543701	3	10.0	3	100	0	60	33	33	0	33	1.58
31551754--31551803	21	2.4	21	83	3	57	38	0	20	42	1.52
31560277--31560309	14	2.3	15	94	5	59	39	0	0	60	0.97
31564166--31564196	15	2.1	15	94	5	55	35	0	25	38	1.56
31566291--31566346	28	2.0	28	92	0	94	35	10	25	28	1.89
31569135--31569200	26	2.5	27	85	5	107	28	34	15	21	1.93
31569245--31569401	74	2.1	74	97	0	296	29	22	12	34	1.92
31570054--31570127	38	1.9	38	94	0	130	43	18	10	27	1.83
31571837--31572150	157	2.0	157	100	0	628	39	14	6	39	1.72
31577573--31577601	12	2.3	13	94	5	51	65	6	6	20	1.40
31579594--31579629	18	2.0	18	100	0	72	38	16	16	27	1.90
31581457--31581497	13	3.2	13	83	10	57	75	0	0	24	0.80
31585135--31585184	21	2.4	21	79	0	55	18	18	18	46	1.85
31585071--31585305	118	2.0	118	94	0	416	22	19	14	44	1.86
31585253--31585340	21	4.2	21	83	0	113	17	20	19	43	1.88
31585257--31585354	42	2.4	41	89	5	153	15	19	19	45	1.85
31591282--31591320	20	2.0	20	94	0	69	48	0	2	48	1.15
31591408--31591471	34	1.9	32	81	12	76	43	10	4	40	1.61
31591420--31591460	20	2.1	20	90	4	66	46	12	2	39	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31597815--31597855	21	1.9	22	85	5	57	43	4	19	31	1.72
31598144--31598168	12	2.1	12	100	0	50	36	8	0	56	1.29
31600070--31600499	212	2.0	212	96	0	797	30	14	18	36	1.91
31604917--31604950	3	11.3	3	100	0	68	32	35	0	32	1.58
31609264--31609324	32	1.9	31	93	3	104	39	4	18	37	1.72
31609673--31609723	20	2.5	20	90	6	77	29	11	17	41	1.85
31612804--31612846	20	2.2	20	91	0	68	60	9	9	20	1.55
31613382--31613518	54	2.5	54	86	2	195	24	32	19	23	1.97
31618537--31619141	47	12.9	46	91	4	146	25	29	11	33	1.91
31618601--31619167	47	12.1	47	96	0	1008	26	29	11	32	1.92
31626965--31627096	35	3.6	35	73	13	104	36	24	20	18	1.95
31627008--31627136	40	3.4	38	75	15	131	41	20	17	20	1.91
31626953--31627239	75	3.8	74	84	3	326	36	23	19	19	1.95
31628124--31628177	28	1.9	28	100	0	108	27	25	11	35	1.90
31628433--31628457	7	3.6	7	100	0	50	24	0	0	76	0.80
31635852--31636007	50	3.1	50	84	0	204	42	19	9	28	1.82
31645737--31645788	18	2.7	19	85	5	61	55	3	1	38	1.29
31646185--31646272	20	5.2	17	70	17	58	44	1	2	52	1.21
31646230--31646278	25	2.0	25	84	8	64	42	4	0	53	1.20
31656206--31656266	25	2.4	26	78	15	65	40	3	4	50	1.40
31656789--31656874	44	2.0	44	84	10	117	65	0	1	33	1.01
31658099--31658166	27	2.5	27	78	0	73	20	27	17	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31660441--31660500	25	2.4	25	97	0	111	28	10	21	40	1.85
31662307--31662334	9	3.1	9	100	0	56	57	10	0	32	1.33
31662277--31662418	68	2.1	66	94	2	248	45	9	4	40	1.58
31662407--31662448	16	2.6	16	88	0	57	42	4	0	52	1.22
31664193--31664258	29	2.4	28	80	7	71	24	6	4	65	1.35
31665591--31665642	25	2.0	25	85	10	70	17	1	26	53	1.54
31665721--31665767	18	2.7	17	78	12	51	17	4	21	57	1.56
31669911--31669948	17	2.3	17	86	4	51	28	13	2	55	1.51
31672916--31673107	77	2.5	76	87	3	260	33	17	13	36	1.88
31673151--31673306	84	1.9	84	84	0	213	31	12	9	46	1.73
31685013--31685111	39	2.5	39	81	0	126	43	22	6	28	1.77
31689556--31689741	50	3.7	48	72	14	153	24	17	26	31	1.97
31689551--31689734	101	1.8	101	85	4	264	24	17	26	31	1.97
31689960--31689991	16	2.0	16	93	0	55	59	0	15	25	1.36
31695210--31695396	50	3.7	49	73	13	175	25	17	25	31	1.97
31695205--31695388	101	1.8	101	88	4	282	25	17	25	31	1.97
31695614--31695645	16	2.0	16	93	0	55	59	0	15	25	1.36
31698153--31698206	3	18.0	3	96	0	99	33	33	1	31	1.69
31718053--31718149	17	5.6	17	67	24	51	50	5	3	41	1.40
31718114--31718149	17	2.1	17	89	5	54	44	5	5	44	1.50
31718777--31718938	80	2.0	80	100	0	324	37	14	17	30	1.90
31727338--31727420	41	2.0	41	97	0	157	32	10	21	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31727459--31727628	41	4.2	40	74	18	143	21	21	28	28	1.99
31732447--31732502	24	2.2	27	75	18	66	32	19	16	32	1.94
31732431--31732502	24	2.9	24	79	10	65	33	19	18	29	1.95
31732458--31732517	26	2.4	25	86	5	77	33	20	25	21	1.97
31732458--31732527	25	2.8	24	82	6	86	30	21	22	25	1.99
31732578--31732644	20	3.3	20	91	0	116	31	19	11	37	1.88
31732578--31732633	11	5.5	11	71	16	57	30	19	12	37	1.89
31735525--31735551	8	3.4	8	100	0	54	25	11	22	40	1.87
31737398--31737641	40	6.2	40	88	3	343	24	20	27	27	1.99
31740820--31740935	37	3.1	37	93	0	187	25	31	19	22	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205