genome.fa.s19.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  12  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3669898--3669983	22	3.7	22	78	14	93	27	0	4	67	1.10
3673290--3673357	30	2.3	30	84	5	84	47	5	19	27	1.72
3673415--3675117	850	2.0	850	99	0	3361	40	8	18	32	1.80
3678850--3678887	9	4.2	9	83	9	51	21	2	0	76	0.91
3680682--3680719	15	2.4	17	86	8	53	26	10	5	57	1.53
3681284--3681328	21	2.0	23	87	8	67	53	2	0	44	1.13
3681646--3681685	3	13.3	3	100	0	80	67	0	0	32	0.91
3682405--3682444	15	2.6	15	85	14	55	60	7	0	32	1.25
3682901--3682937	17	2.1	19	85	10	51	51	2	0	45	1.15
3684462--3684524	28	2.2	28	94	0	108	31	4	30	33	1.78
3689129--3689191	28	2.2	28	88	0	90	30	6	31	31	1.83
3689377--3689409	13	2.5	13	85	14	50	75	0	9	15	1.03
3691021--3691059	20	2.0	20	90	5	62	56	5	5	33	1.43
3697054--3697084	3	10.3	3	92	0	53	3	29	0	67	1.06
3704600--3704858	130	2.0	130	98	0	500	20	23	24	32	1.98
3717666--3717701	18	2.0	18	100	0	72	50	11	0	38	1.38
3723296--3723352	30	1.9	30	89	7	89	38	5	14	42	1.68
3723706--3723758	21	2.6	20	83	16	65	66	0	33	0	0.92
3727060--3727227	33	5.1	33	81	0	174	29	10	41	19	1.83
3729757--3729818	27	2.4	28	79	17	71	59	9	0	30	1.29
3729869--3729906	3	12.3	3	88	5	58	2	28	0	68	1.03
3733937--3735558	811	2.0	811	99	0	3190	34	20	18	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3744988--3745048	31	1.9	32	86	3	88	34	9	11	44	1.74
3749590--3749637	22	2.2	22	85	7	62	29	6	6	58	1.47
3750587--3750641	19	2.8	20	80	2	67	27	1	1	69	1.09
3750587--3750641	10	5.6	10	75	12	51	27	1	1	69	1.09
3752590--3752614	8	3.1	8	100	0	50	52	0	0	48	1.00
3752664--3752712	25	2.0	25	83	0	62	46	6	8	38	1.58
3755761--3755840	31	2.6	31	80	9	92	60	3	0	36	1.15
3755767--3755826	23	2.7	23	71	16	56	63	1	0	35	1.05
3768420--3768468	16	3.1	15	77	13	53	34	0	0	65	0.93
3768937--3768995	30	2.0	30	86	0	82	62	5	0	32	1.17
3769060--3769097	18	2.0	20	85	10	53	31	0	0	68	0.90
3779366--3779404	20	1.9	21	89	5	62	38	2	12	46	1.56
3794642--3794686	23	2.0	23	90	0	72	33	4	0	62	1.15
3795910--3795951	15	2.8	15	75	13	50	38	2	4	54	1.34
3798041--3798213	85	2.0	85	98	0	337	48	5	12	32	1.65
3803197--3803303	54	2.0	55	94	1	189	37	12	16	33	1.86
3808356--3808395	21	1.9	21	90	10	64	45	2	0	52	1.14
3808326--3808387	31	2.0	32	81	9	74	37	3	0	59	1.13
3809827--3809864	19	2.0	19	94	0	67	34	10	7	47	1.67
3813176--3813291	58	2.0	57	91	3	189	50	6	31	12	1.66
3817661--3817718	27	2.1	28	81	9	66	51	3	0	44	1.18
3828917--3828957	7	5.9	7	83	11	57	60	0	0	39	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3836407--3836435	14	2.1	14	100	0	58	48	0	0	51	1.00
3841452--3841560	54	2.0	54	100	0	218	28	14	9	47	1.75
3843692--3843771	40	2.0	40	100	0	160	22	25	17	35	1.95
3857593--3857634	22	1.9	22	85	0	57	52	0	0	47	1.00
3857656--3857697	13	2.9	14	80	13	50	54	0	0	45	0.99
3857660--3857696	16	2.3	16	86	13	58	59	0	0	40	0.97
3858121--3858164	14	3.2	14	87	3	54	36	9	6	47	1.62
3858139--3858179	14	2.9	14	92	7	66	36	19	7	36	1.80
3873838--3873875	5	7.6	5	88	11	60	15	0	0	84	0.63
3892718--3892748	12	2.6	12	94	0	53	0	25	0	74	0.82
3892828--3892858	16	1.9	16	93	0	53	54	3	0	41	1.16
3897803--3897858	26	2.2	26	86	0	76	44	14	8	32	1.76
3907546--3907603	29	2.0	29	90	6	91	41	36	6	15	1.74
3912843--3913018	90	2.0	90	100	0	352	27	17	26	28	1.97
3913321--3913363	9	4.8	9	94	0	77	23	9	30	37	1.86
3913524--3913548	12	2.1	12	100	0	50	16	24	36	24	1.94
3917992--3918062	30	2.4	28	81	9	79	30	5	7	56	1.49
3919588--3919631	23	1.9	23	95	0	79	20	20	9	50	1.75
3921626--3921656	5	6.0	5	92	7	53	38	0	0	61	0.96
3921691--3921751	30	2.0	30	81	9	70	59	6	34	0	1.24
3923220--3923354	39	3.4	39	76	8	123	23	20	27	28	1.99
3936961--3937692	88	8.3	87	94	2	1137	29	15	25	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3936998--3937817	88	9.3	90	91	1	495	29	15	25	29	1.96
3938380--3938459	23	3.5	23	91	5	119	38	41	6	13	1.70
3941556--3941589	17	2.0	17	94	0	59	38	2	17	41	1.65
3941567--3941610	23	2.0	22	86	4	61	31	2	22	43	1.66
3942928--3943066	46	3.0	46	77	4	154	28	16	27	28	1.97
3945612--3946106	246	2.0	246	99	0	981	37	14	10	38	1.80
3946136--3946175	20	2.0	20	85	0	53	25	17	25	32	1.97
3952805--3952848	22	2.0	22	86	0	61	29	0	38	31	1.58
3952807--3952859	14	3.7	14	75	9	54	24	0	45	30	1.54
3952810--3952876	29	2.3	28	82	10	80	26	0	37	35	1.57
3953205--3953887	270	2.5	270	83	3	843	33	14	19	32	1.92
3953653--3954120	233	2.0	233	86	2	654	36	14	19	29	1.91
3953388--3954376	503	2.0	502	83	3	1256	33	15	19	31	1.93
3954855--3954978	60	2.1	60	93	1	214	25	8	25	41	1.82
3955019--3955059	13	3.2	13	83	13	57	34	4	9	51	1.56
3955357--3955409	23	2.3	23	78	15	65	9	24	9	56	1.60
3956479--3956598	51	2.4	47	77	20	122	38	4	1	55	1.29
3956633--3956718	13	6.5	13	71	7	57	41	11	2	44	1.53
3956737--3957085	9	40.4	9	68	17	179	42	21	2	34	1.64
3956738--3956802	25	2.7	24	76	11	69	46	21	1	30	1.61
3956787--3956843	25	2.3	25	87	0	78	45	21	1	31	1.62
3956812--3956919	16	7.1	16	68	16	77	43	16	0	39	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3956937--3957096	25	6.3	26	75	8	141	42	21	2	33	1.67
3956927--3957081	34	4.5	33	70	15	109	41	22	2	32	1.67
3962909--3963971	114	9.3	113	96	0	1606	35	17	20	25	1.95
3964479--3964548	7	10.0	7	74	10	63	15	0	41	42	1.47
3964479--3964548	14	5.0	14	84	5	79	15	0	41	42	1.47
3964485--3964538	22	2.5	21	82	14	74	16	0	38	44	1.48
3964939--3965038	44	2.3	45	82	8	125	29	18	28	25	1.98
3965063--3965245	84	2.2	85	85	3	235	27	21	21	29	1.99
3965092--3965249	42	3.8	42	88	1	219	29	20	20	30	1.97
3968612--3968657	3	15.3	3	100	0	92	67	0	0	32	0.91
3975888--3975945	29	2.0	29	82	0	71	24	15	20	39	1.91
3977001--3977055	24	2.2	25	81	15	62	65	0	3	30	1.10
3976999--3977076	15	5.3	14	70	14	50	61	0	6	32	1.21
3978510--3978627	23	5.1	23	82	9	134	12	2	40	44	1.56
3978512--3978630	48	2.6	47	82	7	136	13	2	39	44	1.57
3986883--3986975	25	3.8	25	77	5	100	23	25	16	34	1.95
3991201--3991231	12	2.6	12	89	0	53	19	22	29	29	1.98
3992184--3992281	40	2.5	39	78	4	110	28	24	19	27	1.98
3993133--3993208	4	19.0	4	77	17	70	1	25	2	71	1.07
3993127--3993181	22	2.4	23	82	11	69	0	27	0	72	0.85
3993125--3993208	27	2.9	29	81	10	93	1	25	3	70	1.11
3993133--3993208	34	2.2	34	83	4	91	1	25	2	71	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3995211--3995264	23	2.5	21	75	13	56	31	7	1	59	1.36
4001878--4001945	34	2.0	34	94	0	118	36	10	36	16	1.82
4006542--4006641	45	2.2	46	87	7	152	47	14	21	17	1.82
4008367--4008460	45	2.1	45	83	0	116	31	21	20	26	1.98
4008422--4008586	87	1.9	88	83	3	217	25	22	24	27	2.00
4008572--4009343	44	18.1	42	69	13	323	30	18	22	28	1.97
4008589--4009268	170	3.9	172	90	3	985	30	18	22	28	1.97
4009109--4009416	124	2.4	124	85	3	402	28	19	22	29	1.98
4011389--4011442	23	2.5	21	75	13	56	31	7	1	59	1.36
4011587--4011625	11	3.6	11	82	3	53	33	2	0	64	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205