genome.fa.s19.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  146  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44270306--44270485	84	2.1	84	83	0	216	29	16	16	37	1.91
44271254--44271392	7	19.7	7	76	10	86	43	36	0	19	1.51
44271731--44272001	146	1.9	145	82	4	348	28	19	18	33	1.96
44271895--44272062	40	4.2	39	79	6	158	27	20	19	32	1.97
44272170--44272199	2	15.0	2	92	0	51	46	0	0	53	1.00
44272170--44272202	12	2.8	12	95	0	57	45	0	0	54	0.99
44272466--44272503	19	2.0	19	85	10	51	52	2	0	44	1.14
44272650--44272674	2	12.5	2	100	0	50	48	0	0	52	1.00
44273546--44273623	35	2.2	35	93	0	129	43	3	8	43	1.54
44273642--44273727	36	2.5	34	86	3	127	48	12	1	37	1.49
44276189--44276249	30	2.0	30	87	0	86	39	6	22	31	1.80
44276959--44277106	64	2.2	68	78	10	160	32	16	27	22	1.96
44276983--44277154	67	2.7	64	76	7	186	28	16	29	25	1.97
44282560--44282697	66	2.1	65	82	8	163	40	20	26	13	1.88
44283037--44283185	43	3.5	42	81	3	163	28	14	24	32	1.94
44289609--44289655	22	2.1	22	100	0	94	42	12	19	25	1.86
44291543--44291581	17	2.2	17	86	4	51	74	0	25	0	0.82
44291548--44291577	15	1.9	16	93	6	53	76	0	23	0	0.78
44291842--44291869	13	2.2	13	100	0	56	42	0	14	42	1.45
44295035--44295241	53	3.8	54	77	1	209	19	23	18	38	1.94
44295645--44295672	14	2.0	14	100	0	56	57	7	7	28	1.52
44301232--44301493	46	5.5	47	75	10	187	24	30	17	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44305995--44306201	53	3.8	54	80	1	236	19	24	18	37	1.94
44309255--44309312	30	1.9	30	86	6	82	20	31	29	18	1.97
44316128--44316168	11	3.6	12	80	9	50	0	43	0	56	0.99
44319909--44319946	19	2.0	19	85	10	51	18	31	31	18	1.95
44321734--44321788	29	1.9	28	88	3	83	21	18	27	32	1.96
44325666--44325700	16	2.2	16	89	0	52	51	14	25	8	1.70
44326131--44326243	27	4.2	26	85	8	145	16	24	22	36	1.94
44326134--44326241	55	2.0	54	89	5	164	17	25	20	37	1.94
44334007--44334164	40	4.0	40	85	1	210	24	18	27	29	1.98
44334007--44334154	80	1.9	80	91	2	244	25	19	27	27	1.99
44334022--44334188	80	2.1	80	81	2	192	25	20	25	28	1.99
44336665--44336709	8	5.6	8	81	0	54	51	15	24	8	1.72
44336665--44336713	16	3.1	16	82	11	64	48	16	24	10	1.76
44337148--44337241	27	3.5	26	83	8	107	17	22	19	41	1.90
44337130--44337251	55	2.2	54	79	4	138	18	24	20	36	1.95
44350354--44350471	27	4.4	27	83	1	148	36	18	19	25	1.94
44351120--44351171	27	2.0	26	84	3	68	17	26	21	34	1.95
44351210--44351269	27	2.3	27	85	2	77	21	23	20	35	1.96
44354019--44354120	46	2.2	46	87	3	143	32	16	27	23	1.96
44367439--44367517	37	2.1	37	90	0	122	25	31	18	24	1.98
44367636--44368665	49	21.1	49	97	1	1937	30	28	8	32	1.87
44368634--44368697	32	2.0	32	96	0	119	28	29	12	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44368585--44368746	81	2.0	81	98	0	315	29	29	9	31	1.89
44368536--44368795	130	2.0	130	99	0	511	30	28	9	31	1.88
44368666--44368831	49	3.4	49	97	2	311	30	28	8	31	1.87
44372045--44372137	38	2.4	38	83	1	105	11	23	23	40	1.88
44379292--44379483	76	2.5	76	78	3	181	24	19	20	34	1.96
44379375--44379496	40	3.2	40	70	9	117	21	21	20	36	1.95
44379375--44379524	76	2.0	76	82	0	183	22	21	21	34	1.97
44379551--44379845	152	1.9	152	100	0	590	39	10	16	33	1.83
44383931--44383957	11	2.5	11	100	0	54	25	0	0	74	0.83
44384269--44384368	49	2.0	49	98	0	191	16	24	23	37	1.94
44385584--44385635	22	2.3	23	90	6	81	50	21	7	21	1.73
44386872--44386917	23	2.0	23	84	12	60	45	10	6	36	1.65
44392250--44392284	18	1.9	18	94	0	61	31	25	14	28	1.95
44393833--44393866	16	2.1	17	88	5	52	29	23	5	41	1.78
44393871--44393949	40	2.0	40	97	0	149	39	13	12	34	1.83
44397000--44397037	20	1.9	20	94	0	67	47	7	13	31	1.71
44403204--44403257	27	2.0	27	100	0	108	40	25	7	25	1.82
44407834--44407858	13	1.9	13	100	0	50	76	8	8	8	1.18
44415260--44416087	75	11.1	75	78	4	666	37	17	22	23	1.94
44417273--44417332	22	2.7	22	89	0	93	40	18	23	18	1.92
44419058--44419161	52	2.0	52	98	0	199	37	14	21	26	1.92
44422811--44422939	55	2.3	55	81	5	145	31	27	27	14	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44427476--44427572	47	2.1	47	98	0	185	38	13	18	29	1.89
44431688--44431721	3	11.3	3	100	0	68	67	32	0	0	0.91
44431973--44431997	9	2.8	9	100	0	50	60	12	0	28	1.32
44435892--44435925	3	11.3	3	100	0	68	67	32	0	0	0.91
44436177--44436201	9	2.8	9	100	0	50	60	12	0	28	1.32
44443416--44443562	43	3.4	43	79	5	163	26	15	25	32	1.95
44447454--44447482	13	2.1	14	93	6	51	48	0	3	48	1.18
44448523--44448566	18	2.5	17	81	7	52	15	2	4	77	1.04
44453268--44453551	92	3.1	92	97	0	532	29	4	22	42	1.73
44454437--44454471	16	2.2	16	100	0	70	22	5	40	31	1.78
44460598--44460842	129	1.9	128	80	6	280	27	26	17	27	1.98
44460801--44460939	48	2.9	48	80	6	156	28	29	15	26	1.96
44465230--44465277	20	2.4	20	85	0	60	31	8	8	52	1.61
44466864--44467554	265	2.5	270	83	7	789	40	8	5	44	1.60
44471976--44472033	28	2.0	29	83	16	75	44	3	1	50	1.29
44472480--44472590	54	2.1	53	93	3	195	35	11	29	22	1.90
44485597--44485626	10	3.0	10	100	0	60	0	20	20	60	1.37
44487140--44487198	24	2.5	26	78	18	74	61	5	0	33	1.18
44488126--44488325	61	3.2	58	70	18	150	50	4	3	41	1.39
44488287--44488319	17	2.0	17	88	5	50	48	0	0	51	1.00
44492441--44492488	25	2.0	25	88	12	73	16	10	2	70	1.24
44492473--44492505	15	2.2	15	94	0	57	30	6	0	63	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44504256--44504295	22	1.9	21	85	10	55	45	0	0	55	0.99
44506870--44506957	44	1.9	47	88	6	137	51	5	3	39	1.43
44509068--44509105	16	2.2	17	86	9	51	15	5	0	78	0.91
44512671--44512709	10	4.0	10	93	6	71	30	0	0	69	0.89
44512671--44512709	19	2.1	19	100	0	78	30	0	0	69	0.89
44515670--44515895	42	5.0	42	79	11	159	32	26	14	27	1.94
44515740--44515956	50	4.3	51	85	2	253	33	26	12	27	1.93
44515740--44515956	99	2.2	101	81	5	262	33	26	12	27	1.93
44515864--44515963	51	2.0	51	95	0	182	32	25	12	31	1.92
44516084--44516496	205	2.0	205	97	0	772	33	18	7	40	1.78
44522825--44523113	131	2.2	130	79	4	296	34	19	18	26	1.95
44523823--44523868	16	2.6	17	86	10	58	60	6	8	23	1.49
44525089--44525138	22	2.3	22	100	0	100	26	54	8	12	1.64
44527864--44527910	19	2.5	19	89	6	69	29	21	6	42	1.77
44531908--44532026	61	1.9	64	89	8	192	32	16	13	36	1.88
44532217--44532409	68	2.8	68	87	1	262	27	22	22	27	1.99
44532466--44533113	44	14.7	44	80	6	552	30	18	24	26	1.98
44532467--44533305	88	9.5	89	82	6	849	30	18	25	25	1.98
44532467--44533305	176	4.8	176	86	4	950	30	18	25	25	1.98
44532617--44533289	264	2.5	264	93	0	1141	30	18	24	26	1.98
44533468--44533593	44	2.9	43	84	3	155	30	15	26	28	1.96
44533913--44533962	22	2.3	22	96	0	91	26	52	8	14	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44533843--44533928	38	2.3	38	93	0	145	16	46	12	24	1.82
44534410--44534492	3	27.3	3	73	20	59	30	3	1	65	1.17
44534410--44534492	18	4.4	18	79	13	87	30	3	1	65	1.17
44534409--44534496	27	3.3	26	73	12	81	30	3	1	64	1.17
44534698--44534754	17	3.1	19	78	14	66	31	0	7	61	1.23
44551501--44551609	54	2.0	54	89	5	168	52	9	3	34	1.51
44553566--44553651	42	2.0	43	84	6	113	15	36	24	24	1.94
44556581--44556610	15	2.0	15	93	0	51	36	0	10	53	1.35
44556732--44556773	17	2.5	17	77	14	50	52	0	7	40	1.29
44560193--44560220	12	2.3	12	100	0	56	46	0	14	39	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205