genome.fa.s19.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  159  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47532117--47532158	21	2.0	21	90	0	66	45	2	19	33	1.63
47532392--47532452	23	2.6	23	80	12	70	39	0	6	54	1.27
47532584--47532632	24	2.1	24	84	3	64	51	16	8	24	1.71
47532872--47532905	18	1.9	18	94	5	61	41	8	0	50	1.34
47541883--47541980	11	9.3	11	65	16	55	22	29	2	45	1.63
47543120--47543196	39	2.0	39	100	0	154	38	33	15	11	1.84
47552991--47553029	2	19.5	2	100	0	78	51	0	48	0	1.00
47554814--47554946	72	1.9	66	84	10	149	51	3	3	42	1.32
47556048--47556096	9	5.4	9	82	0	62	40	22	10	26	1.86
47556048--47556096	18	2.7	18	87	0	71	40	22	10	26	1.86
47556136--47556170	6	5.8	6	100	0	70	17	0	17	65	1.27
47556136--47556183	18	2.5	20	90	6	73	20	0	12	66	1.24
47556447--47556676	118	2.0	118	93	0	399	30	14	12	42	1.82
47565233--47565290	29	2.0	28	84	15	75	53	8	13	24	1.68
47568273--47568338	21	2.9	23	70	21	57	31	15	12	40	1.83
47568453--47568494	21	2.0	20	90	4	66	54	21	0	23	1.44
47568621--47568706	40	2.2	40	89	0	136	47	12	8	31	1.71
47571156--47571218	33	1.9	33	93	0	108	30	14	12	42	1.82
47575876--47576933	211	5.0	211	98	0	2021	19	30	7	42	1.79
47576802--47577266	233	2.0	233	99	0	912	17	28	6	47	1.73
47579788--47579933	21	7.0	21	79	0	157	43	17	23	15	1.88
47579801--47579933	42	3.2	42	85	0	185	43	18	23	15	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47579788--47579933	63	2.3	63	83	2	177	43	17	23	15	1.88
47584462--47584558	31	3.4	31	66	24	93	44	3	4	48	1.37
47584450--47584568	55	2.1	55	96	1	220	43	5	3	47	1.44
47588207--47588235	14	2.0	15	93	6	51	20	24	6	48	1.74
47589237--47589306	35	2.0	35	100	0	140	5	40	28	25	1.78
47589250--47589310	17	3.5	17	68	27	56	3	40	29	26	1.72
47589479--47589737	128	2.0	129	98	0	502	30	15	22	31	1.94
47602048--47602345	132	2.3	132	90	0	488	28	15	25	30	1.96
47602056--47602341	44	6.5	45	79	4	307	28	15	25	30	1.96
47609955--47609990	18	2.0	18	100	0	72	33	5	11	50	1.61
47611078--47611106	9	3.2	9	100	0	58	68	0	10	20	1.18
47612631--47612698	33	2.1	33	94	0	118	41	13	19	26	1.88
47614130--47614163	17	1.9	18	94	5	61	26	0	8	64	1.22
47614257--47614309	14	3.8	14	83	11	56	64	0	0	35	0.94
47614265--47614305	7	5.6	7	91	8	64	58	0	0	41	0.98
47625287--47625320	17	2.0	17	88	0	50	61	8	2	26	1.40
47625529--47625603	27	2.8	26	77	18	75	62	1	9	26	1.33
47625553--47625605	27	1.9	28	88	11	83	66	1	9	22	1.31
47636802--47636847	24	1.9	24	86	8	67	47	0	10	41	1.38
47653069--47653093	13	1.9	13	100	0	50	32	4	24	40	1.73
47656035--47656167	62	2.1	62	81	8	146	33	11	11	44	1.76
47672803--47672853	23	2.2	24	82	10	61	58	7	9	23	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47673441--47673484	19	2.5	17	82	10	54	36	0	13	50	1.42
47673442--47673484	16	2.4	18	81	11	54	37	0	11	51	1.39
47683722--47683799	26	2.8	26	90	7	111	30	3	0	65	1.10
47683762--47683787	11	2.4	11	100	0	52	38	7	0	53	1.30
47683777--47683817	21	1.9	22	85	5	57	39	2	4	53	1.35
47683975--47684383	107	3.8	107	86	6	554	31	15	19	33	1.93
47684595--47684639	17	2.7	17	82	3	56	40	0	0	60	0.97
47684623--47684701	11	7.4	11	70	16	67	37	2	0	59	1.11
47684614--47684701	32	2.8	32	91	0	149	36	2	0	61	1.09
47684663--47684702	21	2.0	21	95	5	73	30	2	0	67	1.04
47684663--47684710	21	2.3	21	89	7	71	27	2	4	66	1.21
47687149--47687182	6	5.7	6	92	0	50	61	0	20	17	1.34
47687149--47687182	12	2.8	12	90	0	59	61	0	20	17	1.34
47688040--47688095	22	2.5	22	91	5	85	55	5	5	33	1.45
47689557--47689588	6	5.3	6	100	0	64	50	0	18	31	1.48
47695399--47695484	42	2.0	42	100	0	172	30	26	20	22	1.98
47697578--47697746	85	2.0	85	91	2	277	37	20	10	30	1.87
47698952--47698997	19	2.4	20	82	10	60	28	4	0	67	1.10
47701210--47701298	28	3.1	28	85	3	106	35	24	1	38	1.63
47701223--47701298	28	2.7	29	87	4	109	38	23	1	36	1.64
47701794--47701827	10	3.3	10	88	8	50	73	0	23	2	0.97
47702001--47702033	5	6.6	5	100	0	66	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47702001--47702043	15	2.9	15	89	6	52	37	0	2	60	1.10
47702320--47702405	18	5.0	17	73	6	66	31	16	6	45	1.74
47702353--47702398	17	2.6	18	86	6	67	32	13	6	47	1.68
47702353--47702413	17	3.7	17	78	10	65	31	11	8	49	1.68
47702487--47702575	18	4.9	18	70	12	67	29	11	13	46	1.78
47702550--47702724	19	9.1	20	68	16	61	37	12	9	40	1.76
47702562--47702796	17	12.9	17	74	17	106	32	11	11	43	1.77
47702569--47702813	18	13.3	18	71	18	109	34	11	10	43	1.76
47702550--47702817	34	7.2	38	77	16	208	34	11	10	43	1.75
47702706--47702806	52	1.9	52	88	7	152	24	10	12	51	1.72
47702496--47702812	35	8.7	35	70	15	169	32	11	11	43	1.77
47702694--47702843	17	8.7	17	73	17	105	30	11	12	46	1.76
47703920--47703968	9	5.4	9	85	0	71	40	20	10	28	1.85
47703920--47703968	18	2.7	18	90	0	80	40	20	10	28	1.85
47706827--47706864	18	2.0	20	85	10	53	42	0	2	55	1.14
47706827--47706866	20	2.1	19	85	4	53	42	0	2	55	1.13
47721130--47721196	29	2.3	30	89	7	111	46	1	4	47	1.31
47724653--47724702	21	2.4	22	83	12	61	58	14	4	24	1.53
47728197--47728289	44	2.1	46	91	4	154	29	4	30	36	1.77
47728192--47728301	46	2.6	41	77	18	125	29	3	30	36	1.75
47728446--47728546	41	2.4	41	78	13	109	59	1	0	38	1.09
47728406--47728628	110	2.0	107	84	9	290	52	4	0	42	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47728428--47728635	65	3.6	58	68	19	166	51	3	0	43	1.26
47728448--47728537	13	7.0	13	72	21	57	57	2	0	40	1.11
47730176--47730237	25	2.5	25	97	0	115	41	19	9	29	1.83
47733744--47733787	19	2.3	19	84	7	54	38	11	13	36	1.81
47736497--47736554	4	14.8	4	80	10	50	22	3	1	72	1.09
47738948--47738978	14	2.2	14	94	0	53	38	0	12	48	1.42
47741079--47741145	29	2.2	30	86	5	91	62	1	0	35	1.04
47741454--47741497	17	2.6	17	82	13	63	61	2	4	31	1.28
47742485--47742572	3	29.3	3	95	0	158	2	0	30	67	1.03
47743981--47744046	31	2.1	31	88	0	96	36	19	7	36	1.81
47749751--47749883	62	2.2	57	85	6	167	50	3	3	42	1.35
47749986--47750030	23	2.0	22	83	12	56	13	37	31	17	1.89
47755219--47755255	14	2.5	15	91	8	58	78	5	2	13	1.03
47758501--47758658	77	2.1	77	95	2	282	27	25	10	36	1.88
47763241--47763272	16	2.0	16	100	0	64	18	25	18	37	1.94
47763269--47763463	51	3.9	50	80	7	193	33	28	14	23	1.94
47767669--47767705	14	2.7	13	88	12	56	2	21	0	75	0.92
47769422--47769507	19	4.5	20	73	14	74	56	5	0	37	1.23
47769478--47769520	22	2.0	21	90	4	68	65	4	0	30	1.13
47769649--47769679	16	1.9	16	93	0	53	35	6	9	48	1.62
47771157--47771199	21	2.0	21	82	8	52	46	4	4	44	1.45
47771230--47771259	15	2.0	15	93	0	51	76	0	0	23	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47775972--47776019	24	2.0	24	92	4	80	70	14	6	8	1.31
47776503--47776552	25	2.0	24	88	11	75	30	8	2	60	1.37
47776643--47776686	11	3.9	11	90	3	70	45	0	31	22	1.53
47776643--47776686	22	2.0	23	95	4	81	45	0	31	22	1.53
47776782--47776820	20	2.0	20	94	0	69	33	25	23	17	1.96
47776752--47776875	60	2.1	60	95	0	221	28	29	23	19	1.98
47780805--47780851	22	2.0	24	84	15	64	23	10	10	55	1.65
47781684--47781784	33	3.0	33	75	2	103	16	23	13	45	1.84
47783333--47783375	17	2.4	18	88	3	61	58	0	4	37	1.19
47786264--47786304	12	3.4	12	83	12	57	48	31	19	0	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205