genome.fa.s19.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  170  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50619881--50619924	22	2.0	22	90	4	70	29	0	4	65	1.12
50620418--50620442	6	4.2	6	100	0	50	0	16	0	84	0.63
50625977--50626126	45	3.3	45	86	0	201	24	16	24	35	1.95
50625977--50626164	45	4.2	45	84	1	200	21	17	26	34	1.96
50631552--50631768	43	5.0	43	82	2	274	26	30	17	24	1.97
50631552--50631768	86	2.5	86	89	1	310	26	30	17	24	1.97
50631790--50631905	43	2.7	44	82	2	128	33	23	16	26	1.95
50631661--50631862	112	1.8	112	86	0	296	26	27	17	27	1.98
50633287--50633321	16	2.2	16	94	0	61	60	14	11	14	1.60
50634429--50634467	19	2.1	19	100	0	78	25	20	10	43	1.83
50635295--50635467	88	2.0	87	95	1	310	38	14	15	31	1.88
50636244--50636306	20	3.1	20	73	11	65	46	4	0	49	1.23
50636244--50636303	10	5.8	10	75	11	50	48	5	0	46	1.24
50636237--50636309	30	2.4	30	77	8	78	50	4	1	43	1.29
50637609--50637887	41	6.8	41	85	2	364	31	23	21	23	1.99
50637951--50638077	40	3.2	41	76	14	124	22	22	20	35	1.96
50641879--50642430	272	2.0	272	89	1	847	30	15	16	37	1.89
50642649--50642689	6	6.5	6	89	10	64	21	17	0	60	1.35
50642649--50642689	20	2.2	18	91	8	64	21	17	0	60	1.35
50642779--50642813	16	2.3	15	90	5	52	14	31	0	54	1.40
50644966--50645094	52	2.5	52	88	3	181	26	30	14	28	1.95
50646471--50646521	25	2.0	25	85	7	68	15	5	11	66	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50648832--50648866	12	2.8	12	91	4	52	60	0	8	31	1.27
50650563--50650986	44	9.8	44	70	10	203	28	21	20	29	1.98
50650518--50650999	171	2.8	172	92	1	786	28	21	19	30	1.97
50652311--50652345	9	3.9	9	88	11	54	0	0	11	88	0.51
50652312--50652345	11	3.3	11	84	16	54	0	0	8	91	0.43
50669777--50669828	7	7.4	7	85	8	70	73	0	15	11	1.11
50669776--50669828	13	3.7	15	85	10	67	73	0	15	11	1.09
50671061--50671477	87	4.8	87	90	3	646	28	23	23	23	2.00
50671293--50671429	43	3.2	43	65	17	120	27	26	24	22	2.00
50671061--50671477	172	2.4	173	90	3	651	28	23	23	23	2.00
50673464--50673503	18	2.2	18	100	0	80	40	42	5	12	1.64
50673939--50673993	27	2.0	27	86	6	76	25	29	0	45	1.54
50673950--50674006	20	3.0	18	82	10	69	22	31	0	45	1.53
50675691--50675726	18	2.0	18	100	0	72	38	5	27	27	1.79
50680239--50680297	21	3.1	18	81	15	73	72	0	5	22	1.03
50680239--50680382	9	15.6	9	67	17	55	63	2	2	30	1.22
50680278--50680347	27	2.7	24	79	16	68	62	2	2	31	1.24
50680470--50680495	11	2.4	11	100	0	52	76	0	0	23	0.78
50681063--50681437	187	2.0	187	98	0	732	43	6	19	30	1.76
50684083--50684311	9	24.6	9	65	20	53	32	2	3	61	1.27
50684079--50684136	19	3.0	19	76	2	62	32	0	3	63	1.11
50684103--50684147	20	2.2	21	84	4	56	37	2	0	60	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50686853--50686923	30	2.5	28	86	8	106	25	4	26	43	1.73
50686860--50686920	30	2.0	30	96	0	113	22	4	26	45	1.72
50692354--50692497	42	3.4	42	89	2	209	29	27	15	27	1.96
50698108--50698155	17	2.5	19	77	19	55	27	14	18	39	1.90
50702165--50702204	19	2.0	20	90	4	64	67	5	0	27	1.11
50702172--50702243	19	3.8	19	75	17	62	63	5	1	29	1.25
50702201--50702244	20	2.2	21	88	8	65	65	4	2	27	1.23
50703477--50703521	17	2.7	17	86	3	65	64	2	8	24	1.34
50703705--50703736	3	10.7	3	93	0	55	31	3	0	65	1.08
50705571--50705618	22	2.2	22	100	0	96	25	33	0	41	1.55
50705627--50705689	31	2.1	30	91	5	101	36	0	0	63	0.95
50706137--50706672	268	2.0	267	99	0	1063	25	18	28	27	1.98
50707984--50708039	24	2.3	24	96	0	103	42	32	23	1	1.64
50708258--50708322	29	2.6	23	72	25	67	52	26	0	21	1.47
50708261--50708562	28	10.5	28	83	6	354	50	23	0	25	1.52
50708255--50708562	57	5.3	57	86	6	424	49	24	0	25	1.53
50708255--50708562	85	3.6	85	88	3	420	49	24	0	25	1.53
50708560--50708616	26	2.2	26	100	0	114	26	7	7	59	1.49
50708588--50708729	55	2.5	55	78	12	153	35	9	7	47	1.66
50708712--50708736	10	2.5	10	100	0	50	44	8	0	48	1.32
50710316--50710653	125	2.7	125	90	0	532	33	20	14	32	1.92
50712459--50712796	125	2.7	125	90	0	523	33	20	13	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50714959--50715013	13	3.9	13	73	17	56	38	45	0	16	1.47
50714994--50715110	39	3.0	38	91	3	189	50	28	2	18	1.60
50715237--50715311	37	2.0	37	92	0	105	36	5	14	44	1.68
50715318--50715395	9	8.7	9	86	0	102	25	5	17	51	1.66
50715304--50715395	18	5.1	18	86	4	114	25	6	19	48	1.72
50715310--50715394	27	3.1	27	88	3	127	25	5	20	48	1.72
50725219--50725326	25	4.3	25	81	4	119	33	22	25	19	1.97
50725229--50725333	50	2.1	50	83	3	131	35	19	26	19	1.95
50728867--50728934	34	2.0	34	85	5	93	29	23	26	20	1.99
50735455--50735511	25	2.3	25	84	6	71	31	19	28	21	1.97
50743069--50743143	19	3.6	20	80	16	89	38	17	9	34	1.82
50743560--50743724	89	1.9	89	85	2	233	30	21	15	32	1.94
50743486--50743770	44	6.4	44	80	3	196	29	23	15	31	1.95
50743488--50743768	133	2.1	133	89	0	427	29	23	15	31	1.95
50743516--50743771	44	5.8	44	83	2	264	30	22	15	31	1.95
50743772--50744462	88	7.9	88	91	0	1006	23	26	24	25	2.00
50745673--50745698	11	2.4	11	100	0	52	0	7	0	92	0.39
50751177--50751268	47	2.0	47	88	0	139	26	16	5	52	1.65
50751400--50751474	19	3.8	19	91	6	114	36	18	10	34	1.86
50751465--50751673	105	2.0	105	95	0	373	28	17	18	35	1.93
50753544--50753568	8	3.1	8	100	0	50	12	52	12	24	1.72
50755064--50755278	107	2.0	107	94	3	378	35	10	10	43	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50757911--50757967	28	2.0	28	96	0	105	33	17	29	19	1.95
50766991--50767959	44	21.7	43	72	14	454	31	18	22	27	1.97
50766943--50767271	170	1.9	173	86	4	477	29	20	22	27	1.98
50766989--50767579	263	2.3	259	87	3	832	29	19	22	28	1.98
50767379--50767999	232	2.7	232	92	1	987	31	17	21	28	1.97
50767700--50768008	88	3.4	87	71	17	268	32	17	21	28	1.96
50767653--50768041	188	2.1	187	88	4	581	32	18	20	27	1.96
50767841--50768008	44	3.8	44	77	7	119	32	16	21	29	1.95
50768470--50768494	8	3.1	8	100	0	50	12	52	12	24	1.72
50768971--50769008	11	3.2	12	92	7	60	0	52	0	47	1.00
50770561--50770585	5	5.0	5	100	0	50	40	0	0	60	0.97
50772194--50772238	16	2.9	16	83	6	58	13	0	35	51	1.41
50772416--50772935	125	4.2	125	84	5	656	37	15	16	30	1.90
50775584--50775619	18	2.0	18	88	0	54	41	8	25	25	1.83
50777148--50777221	31	2.3	32	77	9	80	64	2	2	29	1.21
50786046--50786082	20	1.9	19	89	10	58	43	0	10	45	1.39
50791850--50791897	20	2.4	20	85	0	69	70	6	4	18	1.25
50796583--50796643	26	2.3	26	80	5	70	60	3	4	31	1.34
50796662--50796701	21	1.9	21	84	0	53	55	2	10	32	1.47
50799434--50799473	9	4.4	9	87	0	62	27	10	15	47	1.77
50809940--50810093	28	5.5	28	96	0	265	26	11	28	33	1.91
50815780--50815814	16	2.2	16	100	0	70	20	14	11	54	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50817110--50817245	68	2.0	68	98	0	263	32	15	19	33	1.93
50822607--50822668	31	2.0	31	100	0	124	45	9	3	41	1.53
50825049--50825113	23	2.9	23	80	15	82	20	18	18	43	1.89
50842128--50842215	30	2.9	31	79	12	94	37	17	15	29	1.91
50843334--50843395	30	2.0	31	84	9	83	35	14	1	48	1.54
50845115--50845161	22	2.1	22	96	0	85	61	0	6	31	1.21
50845709--50845788	39	2.1	39	97	0	151	32	25	18	23	1.97
50856354--50856596	50	4.8	50	89	0	360	25	22	30	21	1.99
50858656--50858704	18	2.8	16	80	20	53	73	0	6	20	1.04
50858695--50858737	21	2.0	22	86	4	61	72	4	4	18	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205