genome.fa.s19.2.7.7.80.10.50.1000.201.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  201  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59579714--59579752	16	2.5	16	95	4	71	46	7	17	28	1.76
59583445--59583653	92	2.3	91	86	5	278	45	3	3	46	1.39
59583581--59583628	26	1.9	25	84	16	64	45	0	2	52	1.12
59583790--59583824	18	2.0	17	88	5	52	45	0	0	54	0.99
59583780--59584093	156	2.0	157	97	0	594	47	6	3	43	1.44
59583946--59583994	15	2.9	18	80	20	61	44	0	0	55	0.99
59583946--59584000	15	3.4	16	80	16	53	43	0	1	54	1.10
59584177--59584212	16	2.2	16	95	0	63	38	33	0	27	1.57
59585298--59585337	21	1.9	21	84	0	53	57	2	0	40	1.12
59592901--59592981	25	3.3	26	76	10	80	67	1	3	27	1.14
59592928--59592998	9	7.7	9	73	21	58	66	0	1	32	1.01
59592955--59592995	11	4.0	10	90	9	57	65	0	0	34	0.93
59595274--59595335	27	2.3	25	74	17	61	54	1	8	35	1.39
59595624--59595685	30	2.1	30	82	11	74	51	9	0	38	1.35
59601602--59601781	98	1.8	98	91	0	297	27	8	25	38	1.84
59606928--59606987	8	6.9	8	75	21	50	33	1	1	63	1.14
59606831--59606999	9	17.9	9	70	16	101	32	2	3	60	1.28
59608570--59608603	16	2.1	16	88	0	50	44	2	11	41	1.56
59613654--59613682	14	2.0	15	93	6	51	20	20	3	55	1.58
59618818--59618912	27	3.5	26	81	11	111	45	1	18	34	1.57
59618819--59618912	13	7.0	13	77	10	91	45	1	19	34	1.57
59618819--59618912	40	2.3	40	83	5	127	45	1	19	34	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59618808--59618936	67	1.9	67	81	9	156	44	2	18	34	1.63
59623871--59623979	44	2.5	44	95	0	191	28	22	14	34	1.93
59623961--59623998	14	2.7	14	87	0	58	23	28	7	39	1.83
59623917--59624042	58	2.2	58	91	0	207	29	24	13	32	1.93
59637921--59637963	9	4.8	9	94	0	77	37	30	9	23	1.86
59644453--59644543	43	2.1	44	97	2	175	60	24	8	6	1.50
59644956--59644990	6	5.8	6	96	0	52	68	11	0	20	1.20
59648274--59648498	51	4.4	51	78	4	213	30	28	16	24	1.97
59651255--59651294	17	2.4	17	100	0	80	22	30	0	47	1.52
59653627--59653667	14	2.8	15	85	14	59	53	0	2	43	1.13
59656490--59656538	22	2.2	22	88	0	71	36	20	20	22	1.95
59667031--59667070	21	1.9	21	85	10	55	57	12	15	15	1.66
59674936--59675000	30	2.1	31	91	2	105	44	4	15	35	1.67
59675853--59675879	14	1.9	14	100	0	54	33	7	29	29	1.85
59679246--59679330	9	8.7	10	78	8	70	65	2	5	25	1.27
59679277--59679314	3	12.7	3	94	0	67	65	0	2	31	1.06
59683376--59683653	25	11.2	25	73	7	138	33	19	26	20	1.96
59683390--59683507	49	2.4	49	80	9	141	33	21	24	20	1.97
59683463--59683653	75	2.5	74	77	9	192	34	19	27	19	1.96
59692731--59692849	63	1.9	63	82	3	150	34	7	10	47	1.65
59699205--59699375	43	4.0	43	79	8	172	22	17	27	32	1.96
59699220--59699375	84	1.9	84	84	8	210	23	17	28	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59702157--59702291	23	5.9	24	71	11	97	19	31	18	30	1.96
59702165--59702285	46	2.6	47	78	7	133	19	32	18	30	1.95
59702257--59702332	23	3.3	23	71	10	73	26	30	9	34	1.87
59704504--59704552	9	5.4	9	90	0	80	26	12	22	38	1.89
59704502--59704552	18	2.8	18	100	0	102	29	11	21	37	1.89
59704504--59704561	27	2.1	27	83	0	71	29	13	20	36	1.91
59704787--59704846	30	2.0	31	86	3	86	20	40	0	40	1.52
59706498--59706682	101	1.8	102	90	5	304	23	18	27	30	1.98
59706495--59706690	51	3.9	49	79	4	214	23	18	28	29	1.98
59706604--59706684	26	3.2	26	65	28	73	23	14	28	33	1.94
59706908--59706939	16	2.0	16	93	0	55	59	0	15	25	1.36
59716010--59716053	23	1.9	24	86	9	65	45	0	9	45	1.35
59721962--59722013	23	2.3	23	89	0	77	26	7	23	42	1.81
59726596--59726628	3	11.0	3	93	0	57	63	0	33	3	1.10
59727953--59727995	16	2.7	16	79	13	52	51	18	13	16	1.77
59730261--59730300	13	3.1	13	92	0	71	27	7	25	40	1.82
59733809--59733861	20	2.8	19	85	5	72	37	5	5	50	1.50
59736620--59736654	17	2.0	17	88	5	52	42	0	57	0	0.99
59736617--59736650	6	5.7	6	89	0	50	38	0	61	0	0.96
59739458--59739496	20	1.9	21	85	15	55	43	12	0	43	1.42
59739843--59739880	16	2.3	17	90	4	60	76	2	5	15	1.08
59746704--59746898	88	2.2	88	91	3	313	60	3	3	32	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59746893--59746929	19	1.9	19	89	10	58	64	10	2	21	1.37
59750069--59750121	24	2.2	24	93	0	88	56	9	0	33	1.32
59752038--59752089	24	2.2	24	89	0	77	55	9	1	32	1.43
59752174--59752272	48	2.0	49	96	3	182	56	2	26	15	1.50
59752534--59752571	16	2.5	15	86	4	58	73	0	23	2	0.95
59754577--59754672	45	2.1	45	88	0	138	29	15	25	30	1.96
59763060--59763118	27	2.2	25	78	18	66	50	8	1	38	1.43
59766065--59766111	24	1.9	25	83	12	62	38	2	0	59	1.09
59767573--59767597	12	2.1	12	100	0	50	8	48	8	36	1.62
59769794--59769822	15	1.9	15	100	0	58	44	0	0	55	0.99
59769786--59769832	22	2.1	22	84	7	60	46	0	0	53	1.00
59782360--59782384	13	1.9	13	100	0	50	0	12	0	88	0.53
59787009--59787038	5	5.8	5	96	4	51	43	0	0	56	0.99
59795309--59795356	23	2.0	23	84	4	60	16	18	18	45	1.85
59798559--59798699	42	3.4	42	84	3	160	30	19	13	36	1.91
59805233--59805569	128	2.7	128	90	3	504	33	6	17	42	1.76
59805519--59805787	4	66.5	4	97	2	511	26	0	24	49	1.51
59816621--59816652	16	1.9	17	93	6	57	31	6	6	56	1.49
59827356--59827395	16	2.4	17	87	4	55	62	0	5	32	1.17
59827351--59827395	16	2.8	16	82	3	54	62	0	4	33	1.15
59827452--59827511	21	2.9	21	82	2	77	55	0	3	41	1.16
59827457--59827512	10	5.5	10	75	12	60	55	0	3	41	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59829580--59829634	27	2.0	27	82	6	67	54	1	1	41	1.21
59830626--59830767	41	3.6	41	78	10	134	26	17	25	30	1.97
59830629--59830767	40	3.5	40	80	6	158	25	17	25	30	1.97
59839373--59839416	19	2.3	19	84	0	52	52	0	0	47	1.00
59839386--59839422	19	1.9	19	88	0	56	45	0	2	51	1.15
59839695--59839724	15	2.0	15	93	0	51	46	0	3	50	1.18
59840347--59840468	40	3.1	38	75	9	120	36	22	19	21	1.95
59840509--59840720	41	5.1	41	88	1	291	22	22	25	29	1.99
59840790--59840820	9	3.4	9	90	0	53	25	12	22	38	1.90
59841671--59841829	41	3.9	41	85	0	219	22	22	25	30	1.99
59841673--59841829	82	1.9	82	90	0	251	21	22	25	30	1.99
59842446--59842510	28	2.4	26	76	16	62	55	1	6	36	1.34
59846097--59846150	24	2.3	24	80	3	65	20	14	18	46	1.84
59847139--59847278	43	3.3	42	83	2	172	20	13	33	32	1.91
59847735--59847784	22	2.4	20	83	9	64	68	0	0	32	0.90
59847946--59848008	25	2.6	25	80	7	67	42	3	1	52	1.27
59849929--59849964	18	2.0	18	94	0	63	19	11	30	38	1.86
59850456--59851508	352	3.0	352	99	0	2097	35	19	14	29	1.92
59851561--59851672	45	2.5	46	82	4	138	31	21	20	26	1.98
59862187--59862250	28	2.3	28	81	7	78	42	23	7	26	1.81
59862383--59862437	26	2.1	26	89	0	83	20	18	23	38	1.93
59863986--59864071	41	2.1	41	88	0	127	45	12	6	34	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59879206--59879466	73	3.6	73	98	0	504	27	5	25	41	1.78
59883682--59883731	3	16.7	3	100	0	100	32	0	0	68	0.90
59894344--59894395	24	2.2	24	89	0	77	55	9	1	32	1.43
59895686--59895761	38	2.0	38	97	0	143	23	22	18	35	1.96
59900717--59900763	21	2.2	21	88	0	67	25	38	10	25	1.88
59900854--59900905	21	2.7	19	83	16	72	9	13	0	76	1.01
59900858--59900910	20	2.6	21	91	5	83	11	15	0	73	1.09
59900866--59900919	11	4.8	12	74	23	55	11	14	0	74	1.08
59901786--59901824	20	2.0	20	90	10	62	10	0	5	84	0.76
59901805--59901839	16	2.2	16	90	5	54	8	2	5	82	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205