genome.fa.s19.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  91  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26518684--26518713	14	2.1	14	93	0	51	76	0	10	13	1.01
26519492--26519527	18	2.0	18	100	0	72	44	38	0	16	1.48
26523745--26523922	27	6.6	27	84	3	205	29	28	15	26	1.96
26523766--26523921	82	1.9	81	88	3	233	29	28	15	26	1.96
26524410--26524436	12	2.2	12	100	0	54	40	0	7	51	1.30
26529461--26529485	9	2.8	9	100	0	50	56	8	0	36	1.29
26535662--26535710	25	1.9	26	84	12	66	53	6	14	26	1.64
26535831--26535979	76	1.9	77	89	1	228	41	6	4	48	1.46
26537723--26537751	13	2.1	14	93	6	51	31	0	0	68	0.89
26546471--26546512	14	3.0	14	85	0	57	21	0	4	73	1.01
26547267--26547312	21	2.2	21	84	7	58	19	34	26	19	1.96
26555500--26555553	18	3.0	18	86	0	81	35	14	20	29	1.93
26560277--26560536	29	9.1	29	77	11	259	25	16	21	36	1.94
26560281--26560536	87	3.0	85	83	8	288	25	16	21	36	1.94
26561329--26561360	15	2.1	15	94	0	55	28	18	9	43	1.81
26576458--26576531	11	6.2	12	75	20	59	71	0	28	0	0.86
26576474--26576544	5	13.8	5	73	8	54	66	0	33	0	0.92
26576477--26576587	25	4.3	26	74	20	85	66	0	33	0	0.92
26576458--26576566	46	2.4	47	90	6	172	69	0	30	0	0.88
26577295--26577349	27	2.0	27	96	0	101	43	14	34	7	1.73
26579835--26579893	14	4.1	14	91	4	82	33	8	3	54	1.48
26579837--26579905	14	4.7	15	89	5	79	28	7	5	57	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26583217--26583271	22	2.5	23	80	14	62	69	12	0	18	1.19
26583436--26583513	27	2.9	27	88	0	111	17	34	23	24	1.96
26584424--26584465	20	2.1	20	86	0	57	30	4	0	64	1.14
26584592--26584762	90	1.9	92	83	3	229	36	7	15	39	1.76
26586114--26586143	15	2.0	15	100	0	60	33	40	13	13	1.83
26595187--26595212	11	2.4	11	100	0	52	38	7	0	53	1.30
26595209--26595272	9	6.4	10	76	16	53	29	1	1	67	1.09
26595211--26595245	18	1.9	18	100	0	70	34	0	2	62	1.10
26595177--26595304	41	3.1	41	81	9	163	33	3	0	62	1.16
26595210--26595245	9	4.0	9	92	0	63	33	0	2	63	1.08
26595347--26595422	30	2.5	30	95	0	134	7	30	38	23	1.83
26602448--26602533	38	2.3	38	90	4	131	36	23	11	29	1.90
26612891--26612971	42	1.9	42	92	0	135	49	14	6	29	1.68
26613890--26614484	295	2.0	295	100	0	1190	33	19	15	32	1.92
26617056--26617136	41	2.0	41	90	0	126	48	12	8	30	1.71
26617069--26617150	41	2.0	41	88	4	121	48	14	6	30	1.68
26627803--26628298	165	3.0	165	95	0	920	40	14	20	23	1.90
26635323--26635357	18	1.9	18	94	0	61	51	2	2	42	1.31
26635533--26635586	24	2.2	26	83	6	67	18	0	22	59	1.38
26648230--26648438	40	5.2	40	84	2	267	33	17	25	22	1.96
26648240--26648300	20	3.0	20	68	0	59	37	18	26	18	1.93
26649783--26649832	25	2.0	25	88	7	75	36	24	18	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26653943--26654420	27	17.8	27	79	9	356	20	16	20	42	1.90
26653943--26654420	54	8.9	54	77	8	395	20	16	20	42	1.90
26653952--26654407	107	4.3	105	79	6	366	20	16	20	42	1.89
26653955--26654423	134	3.5	133	81	4	550	20	16	19	42	1.89
26662761--26662792	15	2.1	15	94	0	55	68	9	6	15	1.36
26668764--26668814	23	2.3	23	93	3	86	49	17	0	33	1.47
26670992--26671042	23	2.3	23	93	3	86	49	17	0	33	1.47
26681654--26681702	14	3.3	14	73	15	53	26	40	6	26	1.79
26681665--26681716	17	3.2	17	73	15	56	26	40	5	26	1.79
26681654--26681716	31	2.0	31	96	0	117	26	39	6	26	1.80
26682168--26682240	36	2.0	36	89	0	110	32	8	15	43	1.76
26688891--26688932	21	2.0	21	90	0	66	21	33	7	38	1.81
26694986--26695028	21	2.0	21	82	8	52	13	4	27	53	1.60
26709106--26709170	27	2.4	27	79	2	78	44	10	0	44	1.39
26709054--26709483	53	8.3	53	67	18	160	42	13	0	43	1.50
26709045--26709483	105	4.2	103	77	10	428	42	13	1	43	1.51
26709404--26709505	26	3.9	25	72	13	80	40	14	0	44	1.52
26709070--26709486	204	2.0	203	86	2	568	41	13	0	43	1.50
26711157--26711244	29	3.0	29	83	1	86	43	20	11	25	1.85
26711189--26711254	29	2.2	29	89	2	96	42	19	12	25	1.86
26714198--26714240	16	2.7	16	85	0	50	32	30	11	25	1.91
26715875--26715933	25	2.4	24	91	8	100	27	22	23	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26723529--26723577	25	2.0	25	87	0	71	30	16	18	34	1.93
26724861--26724915	27	2.0	27	100	0	110	41	14	18	25	1.88
26740654--26740846	38	5.1	38	85	0	235	34	30	18	16	1.93
26740654--26740846	76	2.6	76	88	2	273	34	30	18	16	1.93
26743249--26743307	28	2.1	28	100	0	118	40	3	15	40	1.64
26743675--26743714	16	2.3	17	83	16	55	65	0	2	32	1.06
26743675--26743719	17	2.6	17	82	10	56	62	0	6	31	1.21
26743699--26743742	19	2.2	21	84	8	56	65	0	4	29	1.12
26756189--26756261	31	2.3	32	86	4	105	30	8	13	47	1.72
26757084--26757124	19	2.0	20	86	13	57	36	0	2	60	1.10
26759115--26759144	3	10.0	3	100	0	60	0	33	33	33	1.58
26766648--26766710	22	2.7	22	73	22	58	44	3	3	49	1.34
26767905--26767954	20	2.5	20	83	0	55	32	8	6	54	1.54
26768718--26768759	21	2.0	21	86	9	59	50	2	0	47	1.14
26768748--26768803	24	2.4	24	85	8	71	48	5	0	46	1.25
26776828--26776872	22	2.0	22	87	8	65	71	4	2	22	1.15
26778012--26778053	10	3.7	12	81	18	54	69	2	16	11	1.29
26778096--26778171	12	6.3	12	68	17	50	61	1	25	11	1.38
26778119--26778152	15	2.3	15	89	0	50	67	0	29	2	1.05
26780496--26780563	34	2.0	34	85	0	91	22	17	20	39	1.92
26780622--26780811	72	2.6	72	90	0	290	25	16	28	29	1.97
26781559--26781769	43	4.8	42	73	13	133	35	27	12	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26781562--26781699	45	3.1	45	74	15	169	38	26	10	25	1.87
26781559--26781753	88	2.2	88	93	0	327	35	26	12	25	1.92
26781560--26781861	88	3.4	88	85	3	279	34	28	12	24	1.92
26781712--26781863	47	3.4	46	75	13	147	30	32	14	22	1.94
26786429--26786499	36	2.0	36	100	0	142	30	19	16	32	1.95
26787885--26787961	36	2.1	36	97	0	145	36	0	15	48	1.46
26795347--26795523	41	4.4	41	87	0	223	14	24	19	41	1.88
26795347--26795523	81	2.2	81	85	2	230	14	24	19	41	1.88
26796770--26796800	16	1.9	16	93	0	53	51	0	0	48	1.00
26798116--26798171	22	2.8	21	78	10	55	66	3	1	28	1.19
26802401--26802469	17	3.9	17	68	20	52	75	4	1	18	1.05
26803058--26803115	22	2.7	21	79	10	62	43	15	5	36	1.69
26803073--26803115	22	1.9	22	90	4	68	41	13	6	37	1.72
26803071--26803168	19	4.8	19	83	13	106	37	16	9	36	1.80
26803104--26803168	19	3.3	20	93	6	107	35	18	9	36	1.83
26803097--26803178	19	4.3	18	86	8	67	36	17	10	35	1.85
26803471--26803983	173	2.9	176	81	7	489	27	22	20	29	1.99
26803698--26803983	89	3.3	89	76	10	336	26	23	21	27	1.99
26803513--26804160	44	14.9	43	71	15	354	26	23	20	29	1.99
26803784--26804064	84	3.3	83	75	10	271	27	23	20	28	1.99
26803698--26804069	173	2.2	173	89	1	559	27	22	20	28	1.99
26803513--26804160	217	3.0	216	83	8	692	26	23	20	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26803698--26804151	173	2.6	173	84	5	519	26	23	20	28	1.99
26804193--26804377	44	4.2	44	66	18	150	28	22	17	31	1.96
26804147--26804555	132	3.1	132	94	0	692	26	24	18	30	1.98
26804208--26804415	44	4.7	44	67	18	128	27	25	15	30	1.96
26805815--26805855	22	1.9	21	85	14	57	7	17	0	75	1.02
26818205--26820359	928	2.3	928	98	0	4193	29	20	24	25	1.99
26821215--26821349	41	3.3	41	90	0	225	24	27	18	29	1.98
26821525--26821619	41	2.3	41	98	0	181	23	27	21	28	1.99
26824401--26824648	23	10.8	23	92	0	415	27	6	21	45	1.75
26824386--26824648	69	3.9	69	95	1	469	26	5	22	45	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205