genome.fa.s19.2.7.7.80.10.50.1000.176.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  176  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52315588--52315644	30	2.0	28	82	6	69	17	1	45	35	1.59
52316648--52316709	32	2.0	32	93	3	108	51	8	0	40	1.31
52316690--52316723	14	2.4	14	95	0	59	41	11	0	47	1.40
52316809--52316839	15	2.1	15	100	0	62	61	0	0	38	0.96
52316825--52316886	12	5.5	11	75	17	56	53	0	3	43	1.17
52320428--52320471	22	1.9	22	86	9	61	56	6	0	36	1.26
52320484--52320636	43	3.6	43	83	5	195	23	17	27	31	1.97
52323499--52323549	26	2.0	26	88	0	75	39	11	25	23	1.89
52323718--52323773	21	2.7	21	71	17	53	21	5	5	67	1.31
52323718--52323782	11	6.2	10	72	13	51	23	4	4	67	1.28
52323796--52323864	20	3.6	19	80	7	77	40	0	7	52	1.29
52323802--52323864	18	3.3	18	84	8	81	41	0	6	52	1.27
52323936--52323969	17	1.9	18	88	5	52	32	11	11	44	1.77
52327407--52327534	57	2.2	56	78	8	134	24	24	26	25	2.00
52330836--52330874	3	13.0	3	100	0	78	33	0	0	66	0.92
52335040--52335085	22	2.2	21	88	7	67	65	2	0	32	1.05
52343716--52343743	14	2.0	14	100	0	56	57	0	0	42	0.99
52343777--52343851	32	2.4	31	82	6	87	45	18	9	26	1.80
52360255--52360865	314	1.9	314	97	0	1159	20	22	13	43	1.87
52371886--52371915	15	2.0	15	93	0	51	63	13	13	10	1.52
52383515--52383550	16	2.2	17	90	5	56	58	11	13	16	1.63
52392582--52392675	49	1.9	48	97	2	179	34	17	13	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52403490--52403550	32	1.9	32	100	0	122	24	6	21	47	1.74
52403999--52404065	20	3.3	20	91	0	107	46	4	25	23	1.71
52409715--52409788	20	3.7	20	88	0	112	51	4	24	20	1.64
52413411--52413457	13	3.5	14	77	8	53	51	12	14	21	1.76
52425780--52425931	42	3.6	42	82	0	187	28	20	18	32	1.96
52425773--52425947	84	2.1	84	86	1	244	29	20	18	31	1.96
52434568--52434605	3	12.7	3	100	0	76	65	0	0	34	0.93
52437256--52437290	14	2.4	14	90	4	52	11	0	34	54	1.37
52437419--52437465	22	2.1	23	84	4	60	70	4	4	21	1.22
52457711--52457786	36	2.1	35	85	7	100	30	9	25	35	1.87
52457721--52457790	35	2.0	36	91	2	115	28	11	22	37	1.89
52472621--52473401	394	2.0	393	90	3	1230	32	21	15	30	1.94
52475162--52475201	19	2.1	19	100	0	80	37	12	5	45	1.64
52475347--52475430	43	2.0	43	92	2	143	48	2	25	23	1.63
52479408--52479451	20	2.2	20	83	4	52	72	4	11	11	1.25
52482012--52482046	10	3.2	11	88	12	54	17	37	0	45	1.48
52482029--52482084	22	2.5	22	91	2	94	26	32	1	39	1.67
52482938--52482962	7	3.6	7	100	0	50	28	0	12	60	1.32
52484134--52484696	23	23.8	22	70	23	189	46	23	0	29	1.53
52484164--52484249	29	3.2	29	77	19	112	46	24	0	29	1.53
52484382--52484479	50	1.9	50	89	8	153	47	24	0	27	1.52
52484411--52484534	29	4.8	28	73	23	128	46	24	0	29	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52484288--52484644	73	4.9	73	86	5	467	46	23	0	29	1.53
52484521--52484558	19	2.1	17	90	9	58	44	28	0	26	1.54
52484221--52484644	144	3.0	145	87	6	532	46	23	0	29	1.53
52484551--52484612	29	2.2	28	91	2	97	46	17	0	35	1.49
52484222--52484644	217	2.0	210	92	3	711	46	23	0	29	1.53
52484584--52484644	21	2.8	22	85	9	72	49	21	0	29	1.50
52484702--52484912	116	1.8	116	93	0	368	38	8	9	43	1.67
52487574--52487801	126	1.8	126	96	0	420	31	22	15	29	1.95
52492508--52492613	42	2.5	42	79	0	122	20	35	19	23	1.96
52496850--52496915	28	2.4	27	80	7	78	36	22	18	22	1.95
52499456--52499550	51	1.9	48	83	10	120	14	22	8	54	1.66
52500428--52500493	27	2.5	26	75	4	69	53	21	3	22	1.60
52500469--52500585	35	3.3	35	84	7	164	46	18	5	29	1.71
52500463--52500573	36	3.1	36	87	5	163	46	18	4	29	1.69
52503833--52503925	4	22.5	4	77	14	91	51	21	2	24	1.59
52503814--52504022	63	3.4	62	79	7	212	53	19	3	24	1.60
52503845--52504004	25	6.4	26	69	18	72	51	20	3	25	1.61
52503957--52504004	13	3.8	13	83	10	55	52	20	4	22	1.64
52506936--52507510	44	13.0	44	84	4	667	31	24	13	30	1.93
52508805--52508850	14	3.3	13	82	11	56	8	21	0	69	1.15
52508819--52508859	21	2.0	21	85	0	55	9	21	0	68	1.18
52509760--52509803	18	2.4	18	88	0	61	65	6	13	13	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52513545--52513611	26	2.6	26	85	2	82	49	2	8	38	1.50
52518825--52518903	34	2.3	34	84	0	95	31	8	17	41	1.80
52519957--52520021	29	2.2	29	77	0	76	41	10	23	24	1.86
52521018--52521050	15	2.1	16	94	5	59	63	3	0	33	1.10
52524938--52525041	35	2.9	35	80	4	102	30	24	22	23	1.99
52527085--52527111	6	4.5	6	100	0	54	0	14	0	85	0.61
52533153--52533186	17	2.1	15	89	10	50	64	0	0	35	0.94
52533173--52533212	19	2.2	19	86	4	55	67	7	5	20	1.34
52542727--52542825	34	2.9	34	77	8	110	35	23	21	20	1.96
52542731--52543049	143	2.2	143	81	3	399	34	22	20	22	1.97
52549690--52549784	47	2.0	47	100	0	190	23	8	20	48	1.76
52551118--52551195	33	2.4	33	84	0	111	35	24	14	25	1.93
52552578--52552627	6	8.5	6	78	12	59	20	0	0	80	0.72
52552577--52552627	17	2.9	17	85	2	75	21	0	0	78	0.75
52552577--52552620	5	8.0	5	85	14	52	22	0	0	77	0.77
52553554--52553595	18	2.3	19	88	12	61	80	0	19	0	0.70
52556017--52556226	40	5.3	39	87	5	233	24	21	28	25	1.99
52555964--52556226	120	2.2	120	81	4	300	25	21	27	25	1.99
52556017--52556261	80	3.1	80	81	3	228	25	21	28	24	1.99
52558720--52558759	14	3.0	13	86	13	55	0	10	0	90	0.47
52558723--52558756	18	1.9	18	94	5	61	0	11	0	88	0.52
52558812--52558881	22	3.2	22	97	0	131	50	14	11	24	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52570884--52570960	30	2.6	29	82	12	86	66	1	6	25	1.24
52570884--52570959	28	2.6	29	81	10	84	67	1	6	25	1.23
52571430--52571474	21	2.2	21	84	7	58	40	2	0	57	1.11
52571668--52572000	43	7.9	42	81	7	352	27	29	18	25	1.98
52571668--52572000	170	2.0	169	83	4	420	27	29	18	25	1.98
52572974--52573053	40	2.0	40	97	0	151	38	15	23	22	1.92
52575763--52575849	27	3.2	27	73	20	99	48	6	0	44	1.29
52575745--52575865	55	2.2	55	100	0	242	44	8	0	47	1.33
52575745--52575865	27	4.4	28	70	22	96	44	8	0	47	1.33
52575861--52576113	130	2.0	126	82	12	308	42	25	1	30	1.66
52576099--52576129	7	4.4	7	91	0	53	35	48	0	16	1.46
52576089--52576129	14	2.9	14	85	0	55	34	46	0	19	1.50
52576018--52576256	126	1.9	119	82	9	293	42	28	1	27	1.65
52576774--52576983	41	5.1	41	91	0	321	31	25	18	24	1.98
52579520--52579553	6	5.3	6	86	13	50	64	2	2	29	1.22
52586350--52586379	15	1.9	16	93	6	53	33	0	40	26	1.57
52588274--52588414	63	2.3	63	83	3	178	25	29	23	21	1.99
52588911--52588957	14	3.6	14	77	16	64	74	0	17	8	1.05
52589330--52589383	4	13.5	4	100	0	108	50	0	25	24	1.50
52589961--52590018	28	2.1	28	100	0	116	31	3	22	43	1.70
52589969--52590026	28	2.2	26	88	11	84	31	5	18	44	1.72
52595754--52595795	17	2.5	17	84	0	57	73	2	9	14	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52602129--52602214	44	2.0	44	93	4	147	26	22	27	23	1.99
52607742--52607832	46	2.0	46	100	0	182	32	7	24	35	1.84
52637825--52638042	114	1.9	113	79	7	244	32	15	13	38	1.86
52640241--52640320	18	4.4	18	91	0	115	25	11	28	35	1.90
52640524--52640566	18	2.4	18	80	7	52	46	2	0	51	1.13
52641976--52642039	21	3.0	22	75	9	78	35	25	20	18	1.95
52642896--52642929	11	2.8	12	86	13	52	0	23	0	76	0.79
52643192--52643234	13	3.3	13	83	9	61	60	0	0	39	0.97
52644047--52644142	40	2.4	41	82	5	115	29	38	11	20	1.88
52644125--52644292	39	4.3	39	72	6	110	29	39	11	19	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205