genome.fa.s19.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  150  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45457371--45457471	10	10.2	10	79	14	79	58	0	0	40	1.05
45457396--45457481	10	8.5	10	85	12	88	56	0	1	41	1.06
45457370--45457481	11	11.1	10	79	14	97	57	0	0	41	1.05
45457428--45457532	42	2.6	40	90	4	158	64	0	1	32	1.11
45461231--45461443	83	2.6	83	84	11	255	45	24	1	29	1.62
45461304--45461443	76	1.9	75	90	1	226	45	25	0	28	1.58
45461430--45461496	7	10.0	7	76	9	50	37	44	1	16	1.57
45461608--45461647	14	2.9	14	92	0	62	32	45	2	20	1.64
45461615--45461661	21	2.2	22	88	3	69	36	42	2	19	1.63
45461454--45461802	164	2.1	164	87	4	517	39	31	0	28	1.61
45461824--45461856	14	2.3	15	94	5	59	36	33	0	30	1.58
45463322--45463801	153	3.2	151	83	10	629	32	11	6	50	1.64
45464027--45464184	10	16.0	10	69	16	89	0	29	0	70	0.92
45464047--45464104	23	2.7	22	77	15	59	0	37	0	62	0.96
45464079--45464191	4	25.5	4	78	19	77	0	27	0	71	0.92
45464029--45464200	34	5.0	34	82	10	174	1	30	0	68	0.97
45464038--45464200	54	3.1	53	77	12	149	1	31	0	67	0.99
45465850--45465969	41	2.9	41	93	0	204	31	24	19	25	1.98
45469032--45469065	15	2.2	16	89	5	52	64	0	2	32	1.08
45469496--45469530	19	1.9	18	88	11	54	65	11	20	2	1.37
45471123--45471172	9	5.7	9	77	17	52	32	2	2	64	1.16
45471125--45471165	17	2.5	16	88	4	55	34	2	2	60	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45471125--45471181	16	3.6	16	84	11	64	33	1	1	63	1.15
45478634--45478674	19	2.2	19	95	0	73	53	12	0	34	1.38
45483705--45483770	32	2.1	32	100	0	132	24	28	9	37	1.86
45500525--45500619	50	1.9	50	89	4	147	35	7	9	47	1.64
45501399--45501466	27	2.6	27	76	23	81	42	1	1	54	1.18
45501573--45501898	19	16.3	19	69	20	154	30	0	12	56	1.41
45501573--45501898	40	8.2	37	66	22	146	30	0	12	56	1.41
45501598--45502100	80	6.3	80	79	12	466	30	0	12	57	1.37
45501677--45501898	101	2.2	99	89	6	365	30	0	13	56	1.37
45501875--45501980	34	3.3	33	69	17	107	31	0	11	57	1.34
45501871--45502020	61	2.5	60	94	2	246	30	0	12	57	1.35
45501791--45502341	141	3.9	141	96	1	978	30	0	12	56	1.38
45501911--45502007	27	3.3	27	70	18	86	25	0	13	60	1.33
45501999--45502039	19	2.2	19	95	0	73	34	0	12	53	1.38
45502016--45502121	34	3.3	33	72	17	116	32	0	10	57	1.32
45502012--45502161	61	2.5	61	94	2	257	31	0	11	57	1.34
45502073--45502241	80	2.1	80	97	0	320	30	0	11	57	1.35
45502140--45502180	19	2.2	19	95	0	73	34	0	12	53	1.38
45502157--45502262	34	3.3	34	68	17	109	31	0	10	57	1.39
45502159--45502301	61	2.3	61	95	0	250	30	1	11	55	1.44
45502277--45502330	23	2.4	21	82	14	72	31	1	12	53	1.50
45502318--45502435	56	2.0	59	87	6	170	32	0	13	53	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45502552--45502588	16	2.4	16	90	4	58	32	2	5	59	1.34
45505575--45505601	13	2.1	13	100	0	54	29	37	0	33	1.58
45507146--45507195	23	2.1	24	82	10	59	8	10	4	78	1.09
45507630--45507722	19	4.8	19	70	10	62	33	4	6	55	1.45
45509989--45510041	24	2.2	25	82	3	63	28	22	3	45	1.70
45512924--45513333	137	3.0	137	99	0	804	35	16	25	22	1.95
45514410--45514982	50	11.5	50	71	2	364	30	21	22	25	1.99
45514413--45514982	100	5.7	99	85	4	709	30	21	22	25	1.99
45515031--45515214	44	4.3	44	70	13	141	32	22	19	26	1.98
45515031--45515346	128	2.4	128	83	5	332	31	22	21	24	1.98
45516029--45516078	23	2.1	24	82	10	59	8	10	4	78	1.09
45516738--45516818	26	3.2	24	76	15	74	32	3	3	60	1.32
45516745--45516833	25	3.5	26	83	7	96	34	3	4	57	1.36
45517022--45517114	19	4.8	19	70	10	62	33	4	6	55	1.45
45521309--45521343	18	1.9	18	88	0	52	28	34	8	28	1.87
45521838--45522429	23	23.9	23	77	15	533	48	22	0	28	1.54
45521838--45522517	154	4.5	155	86	8	847	47	23	0	28	1.55
45521838--45522486	126	5.2	129	81	13	632	47	22	0	28	1.55
45522428--45522639	58	3.6	58	83	9	236	38	25	1	34	1.67
45525860--45526125	124	2.1	125	87	2	383	31	23	15	29	1.95
45526408--45526490	33	2.5	32	72	14	78	61	6	18	14	1.53
45527166--45527202	18	2.1	18	89	0	56	32	8	2	56	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45532799--45532959	3	55.0	3	73	10	93	29	4	3	61	1.34
45533201--45533245	9	5.2	9	79	15	51	22	2	2	73	1.05
45536784--45536902	6	19.8	6	77	14	59	69	6	9	14	1.34
45536800--45536901	33	2.9	32	71	20	87	70	5	9	13	1.32
45536834--45536883	17	3.0	16	77	8	55	76	6	8	10	1.17
45537839--45537898	6	9.0	7	85	10	65	66	0	15	18	1.25
45537844--45537894	26	2.0	26	88	7	77	64	0	15	19	1.29
45537839--45537898	14	4.5	13	83	8	77	66	0	15	18	1.25
45537870--45538085	79	2.7	79	99	0	423	49	8	29	12	1.71
45537944--45537977	7	5.0	7	85	7	52	67	0	17	14	1.23
45537944--45537979	14	2.6	14	95	4	65	66	0	19	13	1.24
45538023--45538056	7	5.0	7	85	7	52	67	0	17	14	1.23
45538023--45538058	14	2.6	14	95	4	65	66	0	19	13	1.24
45539272--45539834	44	12.8	45	72	10	321	29	19	23	27	1.98
45539313--45539688	172	2.2	172	91	1	603	28	18	23	28	1.98
45539272--45539891	87	7.1	87	72	8	409	29	19	23	27	1.98
45539866--45539917	26	2.0	26	96	0	95	40	11	19	28	1.86
45540052--45540598	44	12.5	46	72	10	168	29	19	23	27	1.98
45540096--45540554	129	3.5	129	83	5	437	29	19	23	27	1.98
45540681--45540818	44	3.2	44	65	20	108	27	23	23	26	2.00
45540655--45541064	87	4.7	87	95	0	698	30	23	23	22	1.99
45540812--45540948	43	3.2	43	61	17	102	29	25	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45541073--45541396	167	1.9	166	91	2	533	32	19	21	26	1.97
45541075--45541348	84	3.3	84	67	10	236	32	19	21	25	1.97
45541326--45541481	43	3.6	42	73	10	145	29	17	25	27	1.97
45541155--45541503	86	4.1	85	71	10	284	31	18	22	27	1.97
45541855--45541939	42	2.0	42	95	0	152	34	25	21	18	1.96
45542308--45542407	49	2.0	51	92	3	168	16	14	12	58	1.64
45543017--45543219	102	2.0	102	99	0	397	30	16	18	34	1.93
45543177--45543475	112	2.7	109	88	3	433	30	17	18	34	1.94
45544813--45544874	30	2.1	30	100	0	124	19	33	24	22	1.97
45544813--45544895	30	2.8	30	88	3	87	19	33	22	24	1.97
45545606--45545685	40	2.0	40	92	0	133	42	16	13	27	1.86
45550727--45550789	28	2.2	28	100	0	126	33	22	22	22	1.97
45553736--45553786	26	1.9	27	96	4	95	41	1	0	56	1.10
45553854--45553905	18	2.8	19	79	5	70	36	13	0	50	1.42
45553912--45554004	25	3.5	26	91	5	143	58	0	2	39	1.10
45553912--45554004	26	3.5	26	89	5	134	58	0	2	39	1.10
45557967--45558003	5	7.4	5	93	0	65	59	0	2	37	1.12
45557967--45558010	15	2.9	15	86	0	52	56	4	2	36	1.32
45563766--45563793	14	2.0	14	100	0	56	50	0	7	42	1.30
45565381--45565432	24	2.1	25	82	7	61	30	9	7	51	1.62
45585800--45585844	14	3.3	13	78	9	54	80	6	13	0	0.91
45586516--45586611	48	2.0	48	97	0	183	30	23	14	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45588606--45588644	21	1.9	20	84	5	51	17	15	23	43	1.87
45592089--45592144	17	3.3	16	80	9	58	48	0	8	42	1.34
45593345--45593372	5	5.6	5	100	0	56	64	0	0	35	0.94
45618840--45618911	33	2.2	33	97	0	135	34	5	16	43	1.72
45618978--45619050	33	2.2	33	95	0	128	35	6	16	41	1.75
45618834--45619155	138	2.3	138	97	1	610	36	7	13	42	1.72
45619011--45619224	105	2.0	105	100	0	428	36	8	10	43	1.70
45619201--45619287	37	2.4	37	92	0	138	34	8	14	42	1.76
45620458--45620597	69	2.0	69	84	5	185	41	25	9	23	1.84
45621266--45621358	46	2.0	47	91	2	152	36	12	19	31	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205