genome.fa.s19.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  165  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49130838--49130922	41	2.1	40	84	8	109	58	2	0	38	1.11
49130862--49130910	24	2.0	25	84	7	66	55	2	0	42	1.11
49130837--49130863	7	3.9	7	100	0	54	59	0	0	40	0.98
49130852--49130953	41	2.5	40	82	9	116	61	1	1	34	1.18
49140833--49140861	9	3.3	9	95	4	51	17	0	0	82	0.66
49145327--49145366	20	2.0	20	95	0	71	30	22	15	32	1.94
49153246--49153503	50	5.2	49	69	11	150	31	20	22	24	1.98
49153236--49153503	100	2.7	100	88	3	380	31	20	23	24	1.98
49153629--49153726	44	2.2	45	87	1	135	31	15	26	26	1.96
49165521--49165594	37	2.0	37	97	2	141	51	0	10	37	1.37
49167193--49167234	22	2.0	22	86	13	61	21	0	7	71	1.09
49167721--49167797	29	2.6	30	70	13	70	55	6	5	32	1.47
49173728--49173752	9	2.8	9	100	0	50	20	0	0	80	0.72
49173742--49173795	22	2.5	22	77	14	58	20	5	1	72	1.14
49173759--49173805	12	3.9	12	76	17	53	23	6	0	70	1.10
49173726--49173797	17	4.1	17	73	16	67	19	4	1	75	1.05
49179113--49179158	24	1.9	24	90	0	74	4	13	10	71	1.27
49185110--49185176	2	34.5	2	91	5	111	47	0	50	1	1.10
49185650--49185693	3	14.7	3	90	0	70	0	27	34	38	1.57
49185647--49185704	12	4.8	12	86	0	71	0	22	32	44	1.53
49185647--49185704	6	9.2	6	78	10	53	0	22	32	44	1.53
49190841--49190865	3	8.3	3	100	0	50	68	0	0	32	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49192417--49192527	58	1.9	58	87	7	163	29	32	7	30	1.84
49194972--49195009	3	12.7	3	94	0	67	31	2	0	65	1.06
49194956--49195040	9	8.7	10	81	8	79	25	4	2	67	1.23
49214678--49214780	30	3.5	29	80	9	86	48	7	8	34	1.63
49215932--49215987	21	2.8	20	78	7	62	48	21	7	23	1.74
49217568--49217620	23	2.3	23	87	3	72	66	15	5	13	1.43
49221623--49222128	44	11.7	43	71	9	271	27	22	20	29	1.99
49221842--49222123	84	3.3	84	75	13	311	27	23	20	28	1.99
49221800--49222128	174	1.9	174	91	1	543	27	22	20	29	1.99
49235065--49235108	11	4.2	11	85	11	65	18	6	27	47	1.73
49235078--49235169	9	10.2	9	80	9	98	23	9	27	39	1.86
49235088--49235161	26	2.8	26	81	10	87	22	10	27	39	1.87
49235070--49235170	17	5.5	18	84	4	89	23	8	27	39	1.85
49238202--49238234	15	2.1	16	88	5	50	63	0	3	33	1.10
49238410--49238468	20	3.2	18	79	11	66	61	0	1	37	1.07
49238409--49238471	19	3.2	20	79	6	74	58	0	1	39	1.07
49238620--49238664	17	2.6	17	83	16	58	31	2	0	66	1.04
49238634--49238682	21	2.5	19	86	6	62	28	6	2	63	1.30
49239664--49239710	24	2.0	24	83	8	60	55	0	14	29	1.40
49241811--49241853	22	1.9	23	95	4	79	72	13	4	9	1.26
49242014--49242038	5	5.0	5	100	0	50	60	0	0	40	0.97
49244219--49244255	18	2.1	18	100	0	74	27	10	24	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49251739--49251840	30	3.4	30	80	2	116	29	22	3	44	1.71
49252392--49252475	10	8.1	10	75	12	55	79	0	15	4	0.89
49252449--49252475	7	3.9	7	100	0	54	88	0	0	11	0.50
49252392--49252461	9	7.0	9	76	19	50	78	0	18	2	0.87
49252428--49252468	16	2.5	16	88	4	55	85	0	9	4	0.73
49267543--49267718	71	2.5	70	85	3	212	28	14	22	34	1.93
49267792--49267826	17	2.0	18	88	5	54	17	11	5	65	1.43
49267731--49267987	92	2.9	90	81	10	296	26	17	17	37	1.92
49267977--49268009	14	2.4	14	95	5	59	12	9	9	69	1.36
49268090--49268304	54	4.0	54	89	6	332	28	15	17	37	1.91
49268096--49268304	50	4.0	50	90	5	292	28	16	18	36	1.92
49268546--49268580	14	2.4	15	90	4	54	71	2	0	25	1.00
49268576--49268677	30	3.4	30	83	2	125	29	23	3	43	1.72
49269234--49269307	12	6.4	12	75	14	50	81	0	16	2	0.81
49269228--49269300	17	4.1	17	70	18	58	79	0	19	1	0.81
49269288--49269314	7	3.9	7	100	0	54	88	0	0	11	0.50
49269979--49270013	18	1.9	18	88	0	52	25	11	14	48	1.77
49270022--49270083	23	2.6	25	82	12	94	43	4	11	40	1.62
49269992--49270083	23	4.2	22	74	15	84	43	6	10	39	1.66
49270108--49270214	18	5.6	18	71	20	92	30	11	11	46	1.74
49270117--49270207	43	2.1	43	87	4	130	25	12	13	49	1.76
49274017--49274802	394	2.0	394	88	1	1173	27	20	17	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49281346--49281402	26	2.2	26	87	0	78	47	3	5	43	1.43
49284328--49284369	20	2.1	20	86	0	57	47	0	7	45	1.30
49288507--49288544	19	2.0	19	100	0	76	21	31	5	42	1.75
49297842--49297898	24	2.3	24	79	8	62	49	5	15	29	1.67
49298736--49298771	11	3.2	12	88	11	58	47	0	52	0	1.00
49299231--49299283	22	2.4	22	93	0	88	13	3	52	30	1.57
49300028--49300280	73	3.5	72	92	3	409	31	18	17	32	1.95
49300213--49300460	88	2.8	87	84	6	284	34	19	17	28	1.94
49300682--49301020	76	4.5	74	86	6	441	32	20	15	31	1.94
49300682--49301038	148	2.4	149	84	5	481	34	19	15	30	1.93
49301038--49301213	71	2.5	70	85	3	212	34	22	14	28	1.94
49315001--49315054	23	2.5	22	84	6	65	57	7	3	31	1.44
49315004--49315074	3	23.3	3	71	8	54	60	5	2	30	1.34
49315539--49315574	11	3.2	12	88	11	58	47	0	52	0	1.00
49316032--49316083	22	2.4	21	87	9	77	15	3	50	30	1.62
49318341--49318432	22	4.2	22	87	5	141	30	29	0	40	1.57
49318404--49318462	30	2.0	30	93	0	100	30	35	0	33	1.58
49318382--49318484	52	2.0	51	85	9	138	32	33	0	34	1.58
49318434--49318475	22	1.9	22	90	0	66	33	33	0	33	1.58
49318517--49318573	27	2.0	27	86	6	78	40	0	3	56	1.17
49318671--49318704	15	2.3	15	90	5	52	26	0	5	67	1.13
49322479--49322713	123	1.9	124	90	3	375	31	22	14	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49322469--49322733	123	2.1	124	86	2	372	30	22	15	30	1.95
49326538--49326568	16	2.0	16	93	6	55	67	6	6	19	1.35
49328966--49329181	111	1.9	111	92	0	360	20	36	14	28	1.92
49329418--49329512	30	3.2	30	86	0	109	16	51	8	23	1.71
49329442--49329527	30	2.9	30	85	0	82	20	53	6	18	1.67
49329832--49330033	93	2.2	93	90	3	309	19	34	13	32	1.91
49343153--49343189	16	2.2	17	90	9	58	51	0	2	45	1.15
49347969--49348034	31	2.1	31	91	5	107	42	7	12	37	1.71
49347975--49348041	31	2.2	31	86	5	91	46	7	11	34	1.69
49349097--49349126	2	15.0	2	92	0	51	53	0	0	46	1.00
49349522--49349570	25	2.0	25	84	8	64	51	4	6	38	1.46
49358046--49358070	13	1.9	13	100	0	50	48	0	0	52	1.00
49363358--49363593	67	3.6	66	87	2	314	25	10	7	55	1.60
49370068--49370119	19	2.9	18	72	13	54	61	3	0	34	1.14
49378806--49378858	21	2.4	22	78	18	56	56	0	24	18	1.42
49381941--49381979	20	2.0	20	85	5	53	56	5	7	30	1.49
49382331--49382421	17	5.4	17	69	23	66	43	3	2	50	1.30
49386036--49386075	20	2.0	20	90	0	62	70	0	2	27	1.01
49388022--49388048	3	9.0	3	100	0	54	33	0	0	66	0.92
49392521--49392723	90	2.2	90	81	6	232	37	17	20	24	1.94
49402157--49402186	7	4.3	7	95	0	51	46	0	0	53	1.00
49402300--49402332	16	2.1	16	94	0	57	36	3	36	24	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49402502--49402543	15	2.7	16	82	14	52	52	2	0	45	1.13
49402511--49402552	15	2.9	15	82	10	52	52	0	0	47	1.00
49402537--49402724	61	3.1	61	70	14	199	48	6	1	42	1.39
49402505--49402797	120	2.4	120	98	0	559	50	5	1	42	1.35
49402621--49402672	15	3.6	15	80	12	56	53	1	0	44	1.11
49402505--49402796	59	4.9	58	69	16	220	50	5	1	42	1.35
49405648--49405673	6	4.3	6	100	0	52	50	0	0	50	1.00
49405758--49405796	17	2.4	17	91	4	62	48	5	12	33	1.63
49406173--49406197	12	2.1	12	100	0	50	40	20	0	40	1.52
49410925--49410989	34	1.9	34	84	6	87	27	16	24	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205