genome.fa.s19.2.7.7.80.10.50.1000.187.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  187  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55546034--55546064	15	2.1	15	100	0	62	41	0	32	25	1.56
55547532--55547808	50	5.5	50	83	3	270	22	29	20	27	1.98
55547571--55547808	99	2.3	102	84	5	293	22	30	20	26	1.98
55557502--55557552	25	2.0	25	84	0	66	13	31	0	54	1.39
55563859--55563902	20	2.2	20	100	0	88	40	4	25	29	1.75
55568598--55568646	25	2.0	25	83	0	62	16	28	0	55	1.42
55569900--55570075	39	4.5	39	87	1	228	28	5	22	43	1.75
55570081--55570116	17	2.1	17	100	0	72	27	11	19	41	1.85
55578412--55579314	40	22.6	40	99	0	1736	27	20	29	22	1.98
55586527--55587061	114	4.7	113	73	11	297	30	19	22	27	1.98
55586523--55587061	227	2.4	226	76	8	518	31	19	22	27	1.98
55587943--55588051	53	2.1	53	92	0	182	19	4	35	40	1.72
55590607--55590631	6	4.2	6	100	0	50	16	0	0	84	0.63
55591566--55591657	9	10.2	9	86	0	130	48	17	1	32	1.54
55592750--55592799	21	2.4	21	79	0	55	34	16	42	8	1.77
55593164--55593269	42	2.5	42	96	0	194	24	23	25	26	2.00
55593366--55593409	22	2.0	22	90	0	70	45	27	18	9	1.79
55596516--55596667	27	5.6	27	93	3	241	26	13	28	30	1.94
55596516--55596667	55	2.8	55	94	0	259	26	13	28	30	1.94
55608221--55608429	105	2.0	105	94	0	364	47	13	22	16	1.81
55609713--55610474	50	15.2	49	72	3	475	23	18	22	34	1.96
55609715--55610510	100	8.0	100	86	1	995	23	19	22	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55617121--55617169	25	2.0	25	84	8	64	65	2	10	22	1.34
55618377--55618427	26	2.0	25	84	3	66	43	0	3	52	1.19
55618390--55618525	57	2.4	57	82	1	155	49	3	2	44	1.32
55623153--55623205	23	2.3	23	83	0	70	56	11	15	16	1.67
55638606--55638657	20	2.5	20	80	19	63	32	11	26	28	1.91
55644881--55645013	51	2.6	50	88	4	178	22	19	27	30	1.98
55645279--55645310	16	2.0	16	93	0	55	59	0	15	25	1.36
55654789--55654823	16	2.1	17	89	5	54	11	51	0	37	1.38
55658033--55658131	41	2.4	41	88	3	137	34	18	17	30	1.94
55658033--55658143	41	2.7	41	85	2	116	35	18	18	28	1.94
55659476--55659609	66	2.0	66	98	0	259	30	22	11	35	1.89
55668638--55668687	21	2.4	20	80	9	55	38	2	22	38	1.65
55669453--55669531	23	3.5	23	89	3	117	63	5	3	27	1.33
55670787--55670824	20	1.9	20	94	0	67	42	13	23	21	1.88
55672594--55672634	18	2.3	18	86	0	55	63	0	2	34	1.08
55672652--55672708	27	2.1	27	81	12	64	66	5	1	26	1.22
55679193--55679307	56	2.2	53	83	9	137	26	20	29	23	1.98
55679379--55679416	18	2.1	18	100	0	76	39	21	18	21	1.93
55685535--55685595	24	2.5	24	83	2	68	24	18	36	21	1.95
55688852--55688906	10	5.5	10	75	14	51	21	0	3	74	0.97
55688833--55688906	30	2.5	31	76	12	82	18	2	2	75	1.04
55689926--55689991	17	3.8	16	79	16	62	74	0	3	22	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55689918--55689991	25	3.1	24	77	19	84	72	0	4	22	1.01
55695572--55695651	31	2.6	30	73	13	74	33	11	16	38	1.84
55697338--55697374	9	4.1	9	89	0	56	45	10	10	32	1.74
55698448--55698519	18	4.1	17	73	16	58	59	2	1	36	1.20
55698455--55698538	18	4.6	18	69	18	57	63	2	1	33	1.15
55698567--55698612	24	2.0	23	83	12	58	63	2	2	32	1.19
55698653--55698703	19	2.7	19	80	17	61	66	1	0	31	1.03
55698653--55698703	18	2.7	18	82	14	59	66	1	0	31	1.03
55699133--55699202	26	2.5	29	75	9	74	30	7	1	61	1.31
55699136--55699202	28	2.4	28	82	5	73	28	7	1	62	1.31
55699364--55699463	10	10.5	10	77	9	75	28	1	5	66	1.19
55699401--55699466	28	2.4	27	85	7	87	34	0	3	62	1.11
55699410--55699471	17	3.6	17	79	14	56	32	1	1	64	1.13
55702439--55702474	18	2.0	18	100	0	72	61	16	5	16	1.53
55713748--55713781	17	2.0	17	88	0	50	52	5	14	26	1.64
55716155--55716200	17	2.7	17	79	0	56	23	21	23	30	1.99
55718519--55718894	156	2.4	154	82	4	448	34	17	19	28	1.95
55718909--55718970	14	4.4	14	77	4	54	22	0	25	51	1.48
55719009--55719075	7	9.6	7	83	0	71	20	0	34	44	1.52
55719009--55719075	21	3.2	21	80	0	80	20	0	34	44	1.52
55719013--55719073	28	2.2	28	87	0	86	19	0	34	45	1.51
55719217--55719312	7	13.4	7	72	8	68	18	4	34	42	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55719220--55719301	22	3.8	21	76	9	67	20	4	31	42	1.73
55719218--55719312	43	2.2	43	81	7	113	18	4	33	43	1.70
55719867--55719912	21	2.1	22	84	11	60	47	4	0	47	1.21
55722240--55722425	28	5.9	29	70	23	126	34	2	10	52	1.51
55722199--55722418	66	3.3	66	94	0	361	34	2	11	51	1.51
55722265--55722390	38	3.6	36	75	22	142	33	1	12	52	1.49
55722634--55723010	9	42.0	9	75	11	258	46	19	0	33	1.55
55722621--55723008	61	6.5	61	76	16	384	46	19	0	34	1.55
55722779--55722967	47	3.7	47	75	18	189	46	17	1	34	1.56
55722722--55723008	108	2.7	108	94	3	487	46	18	1	34	1.56
55725907--55725937	15	2.1	14	94	5	53	35	9	0	54	1.33
55738757--55739111	182	2.0	180	90	1	566	31	18	18	31	1.95
55739418--55739461	6	7.5	6	97	2	81	31	0	0	68	0.90
55747087--55747932	423	2.0	423	100	0	1692	34	15	20	29	1.94
55761616--55761766	27	5.6	26	80	4	115	26	16	28	28	1.97
55761616--55761741	54	2.3	54	82	8	148	26	16	28	28	1.97
55761643--55761792	55	2.8	54	81	6	160	27	15	30	27	1.96
55761616--55761771	82	1.9	81	81	3	188	26	16	28	28	1.96
55761643--55761792	27	5.5	27	81	3	113	27	15	30	27	1.96
55769804--55769981	27	6.6	27	83	3	205	26	15	28	29	1.96
55769805--55769960	82	1.9	81	88	3	233	26	15	28	29	1.96
55769801--55769981	82	2.2	81	83	2	229	27	15	27	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55775702--55775751	27	1.9	25	84	8	64	50	20	4	26	1.66
55776158--55776208	25	2.0	26	84	3	68	60	7	5	25	1.47
55776384--55776450	3	22.3	3	78	0	71	59	4	2	32	1.32
55777407--55777456	6	8.0	6	78	8	55	76	2	18	4	1.04
55777406--55777440	18	1.9	18	100	0	70	74	0	17	8	1.06
55777407--55777456	18	2.7	18	87	6	64	76	2	18	4	1.04
55779991--55780135	51	2.8	51	78	10	179	31	28	15	24	1.95
55779991--55780165	51	3.4	49	75	12	156	30	28	14	26	1.95
55780097--55780380	147	1.9	147	94	1	498	25	26	13	34	1.93
55785861--55785905	21	2.2	20	88	7	65	22	28	0	48	1.50
55793153--55793294	40	3.6	39	85	6	169	35	21	30	11	1.90
55793153--55793294	20	7.1	20	78	1	133	35	21	30	11	1.90
55798577--55798645	20	3.5	20	70	7	50	36	24	28	10	1.88
55798652--55798741	40	2.2	40	84	3	110	36	15	28	18	1.92
55799947--55799988	11	3.9	11	81	3	50	66	9	14	9	1.44
55799947--55799988	22	2.0	22	85	4	59	66	9	14	9	1.44
55802716--55802825	40	2.8	40	77	1	123	39	26	19	15	1.91
55818877--55818940	21	3.0	21	93	0	110	48	18	17	15	1.81
55830179--55830248	25	2.8	25	82	0	95	20	21	22	35	1.96
55836903--55836987	28	3.0	28	87	1	125	30	23	21	24	1.99
55837277--55837715	27	16.3	27	83	4	431	17	19	19	43	1.88
55845390--55845684	51	5.8	50	80	4	331	29	26	15	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55845395--55845684	102	2.9	102	92	0	456	30	26	15	28	1.96
55845391--55845680	153	1.9	152	84	3	386	30	26	14	28	1.95
55850256--55850486	82	2.8	82	81	5	243	33	17	26	22	1.96
55850375--55850437	20	3.1	20	65	4	54	34	17	28	19	1.94
55850256--55850486	41	5.6	41	77	3	214	33	17	26	22	1.96
55855899--55856005	41	2.6	41	79	2	108	34	14	26	24	1.94
55858402--55858435	17	1.9	18	88	5	52	35	0	2	61	1.11
55858395--55858436	17	2.5	17	77	14	50	38	0	2	59	1.10
55858405--55858454	25	2.0	24	85	11	66	32	0	6	62	1.20
55858735--55858759	13	1.9	13	100	0	50	32	8	0	60	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205