genome.fa.s19.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  147  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44562760--44562804	21	2.1	22	83	4	56	24	2	4	68	1.19
44570101--44570143	19	2.3	19	88	4	61	41	6	9	41	1.64
44575922--44576611	105	6.7	105	80	5	708	30	17	16	35	1.92
44576274--44576459	96	1.9	96	86	0	264	30	18	15	36	1.92
44575960--44576563	200	3.0	200	80	5	516	30	17	16	35	1.92
44575932--44576611	305	2.2	310	83	4	829	31	17	16	35	1.92
44580884--44581014	59	2.3	60	83	11	175	35	4	15	45	1.67
44589672--44589753	41	2.0	41	88	4	121	43	6	25	24	1.77
44589945--44590026	41	2.0	41	92	0	137	46	12	18	23	1.82
44597693--44597727	12	2.8	13	86	8	54	0	22	0	77	0.78
44597808--44597959	3	50.7	3	100	0	304	67	32	0	0	0.91
44598080--44598139	28	2.1	29	82	14	72	48	3	1	46	1.28
44598394--44598427	11	3.2	11	91	4	52	58	0	0	41	0.98
44598394--44598433	16	2.7	16	85	11	50	57	0	0	42	0.98
44613968--44614059	45	2.0	46	89	2	141	32	18	21	27	1.97
44614713--44614774	31	2.0	31	81	6	72	32	12	9	45	1.75
44615874--44615915	11	3.8	11	81	9	50	21	7	0	71	1.09
44615877--44615924	21	2.3	20	85	7	60	22	8	0	68	1.16
44620037--44620111	26	2.9	26	84	4	80	45	12	13	29	1.79
44625053--44625118	34	1.9	34	87	6	98	25	12	28	33	1.92
44625063--44625137	34	2.2	34	83	6	91	22	12	32	33	1.91
44630873--44630932	30	2.0	30	100	0	120	26	13	23	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44633199--44633277	25	3.2	25	85	0	113	18	31	35	13	1.91
44634082--44634116	18	1.9	18	100	0	70	57	11	17	14	1.66
44643092--44643152	30	2.0	30	100	0	122	22	16	26	34	1.95
44643423--44643452	15	1.9	16	93	6	53	53	10	20	16	1.71
44650107--44650261	77	2.0	77	96	0	283	36	17	16	29	1.92
44655577--44655616	2	20.0	2	100	0	80	50	0	50	0	1.00
44660977--44661024	21	2.3	21	85	3	71	54	0	2	43	1.12
44661277--44661425	10	15.6	9	69	16	52	30	3	2	63	1.24
44661257--44661335	29	2.8	29	79	9	81	25	6	5	63	1.39
44661285--44661357	20	3.7	20	75	10	60	21	5	2	69	1.21
44661314--44661338	11	2.3	11	100	0	50	16	0	8	76	1.02
44661285--44661367	10	8.3	10	71	7	53	25	4	2	67	1.23
44661353--44661390	20	1.9	20	88	0	58	36	0	2	60	1.11
44661277--44661394	50	2.4	49	79	8	132	29	3	2	64	1.23
44667460--44667512	26	2.0	26	100	0	106	30	18	16	33	1.94
44669579--44669759	91	2.0	91	95	2	328	37	11	19	31	1.87
44670357--44670532	46	3.8	46	80	4	210	21	21	28	28	1.98
44670354--44670524	93	1.8	93	93	0	297	21	21	29	27	1.99
44693747--44693817	27	2.6	27	76	13	72	38	5	2	53	1.39
44697995--44698040	22	2.1	22	91	0	74	10	10	15	63	1.53
44698003--44698057	22	2.5	22	81	0	56	14	12	14	58	1.64
44698153--44698191	18	2.3	18	86	8	55	30	0	7	61	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44701259--44701350	42	2.2	42	82	3	105	35	20	21	21	1.96
44701273--44701357	42	2.0	42	88	0	125	35	21	23	20	1.96
44709958--44710104	49	3.0	49	68	21	126	27	26	17	29	1.97
44712132--44712269	41	3.4	41	83	6	138	31	25	14	28	1.95
44713362--44713401	19	2.1	19	90	9	64	37	0	5	57	1.21
44718050--44718318	48	5.6	48	87	2	362	28	31	15	23	1.96
44718050--44718325	144	1.9	144	88	1	419	28	31	16	23	1.96
44728783--44728861	40	2.0	40	94	0	140	15	17	32	34	1.91
44729832--44729889	30	1.9	30	96	0	107	29	13	12	44	1.80
44735363--44735475	39	2.8	39	76	6	111	28	30	22	19	1.98
44738266--44738314	18	2.8	17	79	14	55	34	22	12	30	1.91
44738355--44738396	18	2.3	18	91	0	66	42	11	11	33	1.78
44738555--44738689	59	2.3	59	84	7	168	45	19	17	17	1.85
44739039--44739093	24	2.3	25	76	17	62	47	20	0	32	1.50
44740156--44740202	14	3.1	15	79	17	53	48	2	0	48	1.13
44741672--44741802	46	2.8	46	78	4	138	26	18	22	32	1.97
44743141--44743188	21	2.3	21	96	0	87	31	31	29	8	1.87
44743604--44743661	30	1.9	30	85	0	80	27	24	8	39	1.84
44748820--44748855	18	2.0	18	88	0	54	25	22	13	38	1.91
44753662--44753869	46	4.4	50	74	11	190	24	27	18	29	1.98
44753652--44753874	94	2.4	94	83	2	268	24	27	19	28	1.98
44768386--44768411	3	8.7	3	100	0	52	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44769202--44769239	15	2.5	15	100	0	76	44	23	26	5	1.74
44771353--44771387	18	1.9	18	88	0	52	34	2	2	60	1.26
44771439--44771478	18	2.3	17	86	4	53	35	0	7	57	1.27
44780946--44781029	26	3.2	26	93	0	141	34	4	23	36	1.76
44782817--44783788	137	7.1	137	99	0	1899	25	18	24	31	1.98
44786944--44786982	18	2.2	18	86	9	53	23	15	12	48	1.79
44793861--44793996	71	1.9	71	84	0	182	33	20	22	23	1.97
44794624--44794655	16	2.0	16	100	0	64	12	12	0	75	1.06
44794620--44794661	6	7.5	6	84	12	54	9	16	0	73	1.08
44794620--44794662	22	2.0	21	90	4	68	9	16	0	74	1.06
44796214--44796409	91	2.1	92	84	0	250	34	14	21	29	1.93
44801925--44801979	28	2.0	28	82	7	67	54	3	3	38	1.36
44807761--44807805	21	2.1	21	95	0	81	51	6	4	37	1.49
44808688--44808718	5	6.2	5	100	0	62	0	61	0	38	0.96
44813706--44813756	26	2.0	26	84	7	68	19	13	25	41	1.88
44815492--44815536	23	2.0	23	90	0	72	26	4	15	53	1.61
44819612--44819656	20	2.2	20	84	0	54	60	4	0	35	1.17
44820640--44820685	10	4.5	10	81	5	56	13	21	21	43	1.86
44820630--44820675	20	2.2	21	84	3	58	15	21	21	41	1.90
44820637--44820685	21	2.4	20	86	3	71	12	20	22	44	1.84
44823668--44823732	32	2.0	32	100	0	130	38	24	6	30	1.80
44825279--44825325	24	2.0	24	100	0	94	38	25	4	31	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44829360--44829519	41	3.9	41	85	4	189	23	15	29	31	1.95
44829790--44829830	22	1.9	22	90	5	66	17	26	43	12	1.84
44830915--44831089	46	3.7	47	73	6	126	23	26	20	29	1.98
44837061--44837279	91	2.5	89	84	5	268	39	18	10	31	1.84
44837062--44837279	90	2.5	86	82	5	251	39	18	10	31	1.84
44837372--44837473	9	10.6	9	74	19	82	64	0	0	33	1.07
44837372--44837473	19	5.3	19	78	11	109	64	0	0	33	1.07
44837374--44837483	38	2.8	38	83	6	132	62	0	0	35	1.08
44839153--44839201	13	3.5	13	77	20	53	28	2	8	61	1.36
44839159--44839199	15	2.7	15	85	11	57	31	0	9	58	1.31
44839909--44839957	26	2.0	24	88	8	71	28	0	6	65	1.16
44844584--44844616	15	2.2	15	100	0	66	81	0	6	12	0.85
44849049--44849107	14	4.2	14	74	21	52	64	0	1	33	1.04
44849067--44849112	13	3.7	13	74	8	51	67	0	2	30	1.03
44858841--44858924	28	3.2	28	65	25	83	23	16	29	29	1.96
44858793--44858982	50	3.8	49	84	2	227	25	18	27	28	1.98
44860343--44860444	24	4.2	24	72	13	82	37	21	22	18	1.94
44860482--44860603	64	1.9	64	82	0	154	40	22	15	21	1.91
44861161--44861204	21	2.1	21	95	0	79	47	6	9	36	1.62
44877246--44877285	21	1.9	21	89	0	62	30	25	30	15	1.95
44879192--44879225	16	2.1	16	88	0	50	50	14	17	17	1.79
44884518--44884559	22	1.9	22	85	0	57	33	14	4	47	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44889352--44889536	51	3.6	51	80	2	149	28	28	17	25	1.98
44889447--44889579	51	2.6	51	82	3	153	28	27	20	24	1.99
44892725--44892784	29	2.1	30	84	6	79	43	1	20	35	1.62
44896801--44896845	23	2.0	23	90	0	72	44	26	17	11	1.82
44899615--44899655	22	2.0	21	85	9	57	41	9	9	39	1.71
44900345--44900405	3	20.3	3	100	0	122	67	0	0	32	0.91
44912125--44912390	47	5.7	46	79	10	238	28	19	28	22	1.98
44912125--44912390	140	1.9	141	84	5	360	28	19	28	22	1.98
44917294--44917325	6	5.3	6	92	0	55	46	12	18	21	1.82
44918161--44918204	20	2.4	18	88	11	63	0	34	0	65	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205