genome.fa.s19.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  4  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
951039--951090	24	2.2	24	89	0	77	55	9	1	32	1.43
951286--951348	30	2.1	30	81	0	72	60	12	1	25	1.42
954731--954820	36	2.9	30	73	20	85	51	1	0	47	1.08
954783--954893	55	2.0	55	98	0	213	51	0	3	44	1.25
961660--961722	27	2.3	27	80	17	69	33	12	3	50	1.56
961834--961899	29	2.3	29	81	0	78	25	16	15	42	1.87
963512--963600	28	3.2	26	73	20	74	25	4	2	67	1.21
963566--963616	24	2.0	25	85	14	70	29	1	3	64	1.22
965479--965516	19	1.9	20	89	10	60	28	13	7	50	1.69
971780--971853	19	3.3	21	73	21	62	44	1	1	52	1.17
971958--972015	25	2.3	26	96	3	109	43	18	6	31	1.77
972752--972781	14	2.1	15	93	6	53	36	6	3	53	1.44
973164--973299	68	2.0	66	97	2	254	14	16	11	57	1.66
977607--977649	13	3.0	15	83	13	63	20	27	2	48	1.62
978950--978983	17	2.0	17	94	0	59	44	50	0	5	1.26
987245--987271	6	4.5	6	100	0	54	33	0	0	66	0.92
990622--990685	33	1.9	33	96	0	119	40	12	28	18	1.87
991259--991294	18	2.0	18	94	0	63	22	36	27	13	1.92
992505--992554	22	2.4	21	81	12	59	54	2	2	42	1.23
992516--992559	22	2.0	22	86	4	63	52	4	0	43	1.22
996084--996125	22	1.9	22	95	0	75	14	0	30	54	1.40
1001695--1001743	3	16.3	3	95	0	89	67	2	0	30	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1001768--1001825	6	9.2	6	80	10	62	77	3	1	17	0.99
1002518--1002609	32	2.8	32	82	12	116	38	2	0	59	1.09
1002564--1002593	11	2.7	11	94	0	51	33	0	0	66	0.92
1005602--1005628	9	3.0	9	100	0	54	33	0	0	66	0.92
1005904--1005980	39	1.9	39	87	7	111	28	6	14	50	1.67
1005890--1005980	40	2.3	40	83	9	116	29	6	14	49	1.68
1007788--1007941	84	1.8	84	84	8	215	29	3	12	53	1.56
1012632--1012657	10	2.6	10	100	0	52	88	0	11	0	0.52
1019506--1019600	10	9.7	9	70	14	55	62	3	4	30	1.30
1025513--1026446	56	16.8	56	98	0	1745	24	26	23	25	2.00
1026541--1026572	13	2.5	13	94	0	55	56	12	0	31	1.37
1026784--1026841	30	1.9	30	85	0	80	31	22	5	41	1.76
1033979--1034030	9	5.8	9	95	0	86	38	28	9	23	1.86
1037937--1037964	3	9.3	3	100	0	56	67	0	0	32	0.91
1041570--1041782	109	1.9	108	89	5	329	30	14	19	35	1.92
1043495--1043627	61	2.2	61	83	2	160	41	5	14	39	1.68
1056439--1056682	46	5.6	45	83	10	303	33	14	22	29	1.94
1056475--1056547	36	2.0	36	94	0	128	36	13	20	28	1.91
1056439--1056682	82	2.8	85	84	11	320	33	14	22	29	1.94
1059203--1059231	9	3.2	9	100	0	58	20	0	0	79	0.74
1059165--1059264	48	2.1	48	90	5	157	33	2	0	65	1.04
1059236--1059284	22	2.2	21	82	10	62	34	0	4	61	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1065688--1065716	8	3.6	8	100	0	58	37	0	0	62	0.96
1065776--1065808	16	2.1	16	94	0	57	63	9	21	6	1.45
1087110--1087173	32	2.0	32	100	0	128	43	18	15	21	1.87
1087577--1087612	17	2.1	17	100	0	72	41	0	16	41	1.48
1088609--1088867	91	2.8	91	98	0	491	47	3	2	47	1.32
1089004--1089052	15	2.9	18	80	20	61	44	0	0	55	0.99
1089004--1089058	15	3.4	16	80	16	53	43	0	1	54	1.10
1089274--1089309	16	2.2	16	100	0	72	38	36	0	25	1.56
1094295--1094336	14	3.2	13	80	9	50	11	7	0	80	0.88
1094315--1094345	9	3.3	9	95	4	53	9	3	0	87	0.66
1094361--1094400	18	2.4	16	87	8	53	15	2	5	77	1.04
1107616--1107703	5	16.2	5	76	13	61	25	4	0	70	1.06
1107616--1107703	11	8.1	10	75	15	61	25	4	0	70	1.06
1107628--1107673	6	8.5	6	88	11	57	28	0	0	71	0.86
1107629--1107669	21	2.0	21	90	9	68	29	0	0	70	0.87
1107630--1107703	27	2.7	29	76	19	77	27	2	0	70	1.01
1107717--1107753	20	2.0	20	89	10	60	24	2	2	70	1.14
1107765--1107811	22	2.2	22	85	11	62	65	2	0	31	1.04
1108433--1108692	46	5.6	46	71	22	195	29	22	13	35	1.92
1108474--1108596	62	2.0	63	91	6	205	30	25	10	33	1.90
1108584--1108654	36	2.0	36	94	0	124	28	19	12	39	1.88
1108540--1108692	82	1.9	80	91	2	252	30	21	12	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1110839--1110877	15	2.5	15	87	4	51	25	7	0	66	1.18
1118069--1118118	20	2.5	21	90	9	86	52	10	4	34	1.54
1131495--1131578	42	2.0	42	88	6	125	16	20	16	46	1.84
1132426--1132498	27	2.7	26	75	8	74	65	0	2	31	1.06
1133395--1133435	19	2.1	19	86	4	55	53	0	9	36	1.34
1133497--1133579	27	3.1	26	87	1	112	19	31	20	28	1.97
1133503--1133588	27	3.2	27	84	0	82	17	29	24	29	1.97
1133655--1133704	27	2.0	25	88	11	75	52	0	12	36	1.39
1135530--1135563	17	2.0	17	94	0	59	85	2	11	0	0.71
1143133--1143194	17	3.6	17	70	25	51	56	1	0	41	1.09
1143130--1143179	18	2.6	20	78	18	61	58	0	0	42	0.98
1144151--1144191	18	2.3	18	87	8	57	46	0	0	53	1.00
1154024--1154060	19	1.9	19	100	0	74	48	16	5	29	1.68
1171134--1171175	21	2.0	21	90	0	66	66	4	7	21	1.35
1175013--1175075	32	2.0	32	96	3	119	49	12	6	31	1.66
1180599--1180661	32	2.0	32	96	3	119	49	12	6	31	1.66
1185588--1185652	32	2.1	32	97	2	123	47	12	9	30	1.72
1193438--1193473	3	12.3	3	94	5	65	69	0	30	0	0.89
1193591--1193765	87	2.0	87	98	0	341	54	9	16	20	1.68
1203177--1203211	10	3.5	10	88	0	52	22	2	0	74	0.95
1217798--1217833	19	1.9	18	88	5	54	75	2	0	22	0.94
1234504--1234576	26	2.8	26	83	2	85	15	27	24	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1234662--1234724	25	2.6	25	80	16	71	25	23	15	34	1.95
1234673--1234740	25	2.7	26	80	8	79	25	22	17	35	1.95
1237592--1237672	40	2.0	40	100	0	162	43	27	14	14	1.85
1238487--1238860	51	7.4	51	90	1	574	31	24	12	31	1.93
1238487--1238860	101	3.7	101	89	0	570	31	24	12	31	1.93
1238484--1238860	152	2.5	152	91	0	594	31	24	12	31	1.92
1238934--1238966	17	1.9	17	88	11	50	45	21	0	33	1.52
1242057--1242117	31	2.0	31	87	6	88	63	0	1	34	1.04
1253794--1253836	20	2.2	20	86	0	59	76	4	13	4	1.10
1255309--1255524	83	2.6	84	90	0	344	41	9	13	35	1.77
1263081--1263230	80	1.9	79	91	1	246	26	18	16	38	1.92
1268485--1268525	21	2.0	21	85	9	57	29	4	7	58	1.46
1280564--1280592	14	2.0	15	93	6	51	68	3	0	27	1.05
1281865--1281977	17	6.8	17	70	26	91	53	6	3	37	1.43
1281901--1281962	12	5.0	12	74	25	58	50	6	1	41	1.38
1281917--1281991	29	2.6	29	93	2	123	48	6	4	41	1.48
1283666--1283691	13	2.0	13	100	0	52	23	0	0	76	0.78
1291544--1291577	16	2.1	16	88	5	50	38	2	5	52	1.41
1295320--1295351	8	4.0	8	100	0	64	50	0	0	50	1.00
1296440--1296590	57	2.7	56	80	5	178	49	11	5	33	1.64
1297090--1297169	21	3.7	21	71	3	52	37	7	2	52	1.43
1297760--1297784	2	12.5	2	100	0	50	0	52	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1298211--1298248	18	2.2	18	85	4	51	13	23	2	60	1.45
1301408--1301716	166	1.9	165	85	5	426	33	5	15	44	1.69
1303752--1303829	38	2.1	38	100	0	156	33	25	20	20	1.97
1306622--1306685	31	2.2	30	83	13	80	50	9	7	32	1.64
1318649--1318678	15	2.1	15	93	6	53	23	20	3	53	1.60
1319379--1319419	22	1.9	21	85	5	55	53	0	0	46	1.00
1319408--1319460	23	2.3	23	83	0	61	37	1	7	52	1.41
1321473--1321535	24	2.6	24	89	0	90	19	33	19	28	1.96
1322837--1322902	9	7.4	8	79	14	51	60	1	6	31	1.30
1322859--1322903	3	14.7	3	86	13	65	66	0	2	31	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205