genome.fa.s19.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  86  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25435088--25435122	18	2.0	17	88	5	52	45	0	0	54	0.99
25435233--25435267	18	2.0	17	88	5	52	45	0	0	54	0.99
25435498--25435534	16	2.3	16	95	0	65	24	32	5	37	1.78
25435506--25435543	16	2.4	16	90	0	58	21	31	2	44	1.66
25437136--25437215	18	4.5	17	80	7	88	43	8	15	32	1.77
25437169--25437285	17	6.8	17	77	14	80	42	9	16	31	1.80
25437169--25437285	35	3.3	35	75	11	105	42	9	16	31	1.80
25437136--25437292	52	3.0	53	80	10	155	42	10	16	30	1.81
25437258--25437352	46	2.0	49	86	8	135	40	8	13	37	1.75
25437256--25437390	44	3.0	43	78	16	123	43	7	14	34	1.73
25437343--25437386	18	2.5	17	82	10	61	45	4	13	36	1.64
25437892--25437942	22	2.3	22	82	0	66	0	21	1	76	0.88
25437894--25437927	15	2.2	16	89	5	52	0	17	0	82	0.67
25437909--25437933	13	1.9	13	100	0	50	0	12	0	88	0.53
25438051--25438092	22	2.0	21	90	4	66	9	26	42	21	1.83
25438278--25438351	12	5.8	14	77	15	63	0	27	0	72	0.84
25438287--25438363	15	5.1	15	79	18	72	0	23	0	76	0.78
25438287--25438366	21	4.0	21	79	14	89	0	23	0	76	0.79
25438287--25438363	6	13.2	6	75	14	72	0	23	0	76	0.78
25444009--25444122	30	3.9	30	74	10	92	33	2	25	38	1.70
25448289--25448364	29	2.5	30	81	14	95	46	6	7	39	1.59
25455087--25455462	188	2.0	188	99	0	743	33	11	28	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25458690--25458741	17	3.0	18	81	13	56	65	3	5	25	1.32
25461373--25461433	29	2.1	29	100	0	122	31	13	14	40	1.84
25461437--25461491	18	3.3	18	66	23	57	40	12	3	43	1.60
25461432--25461494	31	2.0	31	100	0	126	42	12	3	41	1.59
25462393--25462422	16	1.9	15	93	6	51	36	10	13	40	1.78
25462497--25462541	16	2.6	18	77	19	51	42	22	11	24	1.86
25463121--25463183	24	2.6	24	97	0	117	22	15	20	41	1.90
25465099--25465178	23	3.5	23	81	3	99	46	35	3	15	1.63
25467036--25467069	17	2.0	17	88	0	50	50	26	5	17	1.69
25472618--25472672	24	2.2	25	78	9	60	52	1	9	36	1.44
25473971--25474007	9	4.1	9	92	0	65	29	10	13	45	1.77
25475461--25475528	16	4.2	16	96	0	127	26	0	35	38	1.57
25475744--25475785	15	2.7	16	82	14	52	52	2	0	45	1.13
25475753--25475794	15	2.9	15	82	10	52	52	0	0	47	1.00
25475803--25476121	66	5.2	64	70	19	286	49	5	3	41	1.43
25475884--25475918	18	2.0	17	88	5	52	54	0	0	45	0.99
25475750--25476158	120	3.4	120	97	1	750	49	4	3	42	1.39
25476004--25476038	18	2.0	17	88	5	52	54	0	0	45	0.99
25476119--25476157	17	2.5	15	80	15	51	51	0	5	43	1.24
25476124--25476157	17	2.0	17	94	0	59	50	0	5	44	1.26
25479621--25479665	20	2.3	20	84	3	56	26	2	6	64	1.30
25486689--25486715	11	2.5	11	100	0	54	22	7	18	51	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25488141--25488286	47	3.2	47	72	16	151	45	2	3	49	1.30
25488124--25488330	91	2.3	91	95	0	369	46	3	3	46	1.36
25493982--25494020	16	2.5	15	84	12	51	41	0	0	58	0.98
25493987--25494110	47	2.7	45	69	16	112	44	2	3	50	1.31
25494082--25494174	26	3.5	26	71	16	91	40	2	2	54	1.24
25494057--25494168	54	2.1	54	86	3	154	41	2	2	52	1.29
25494211--25494240	16	1.9	15	93	6	51	40	0	10	50	1.36
25494095--25494403	120	2.6	120	90	3	471	42	2	4	50	1.36
25494184--25494371	61	3.1	60	68	11	159	42	2	5	49	1.38
25494236--25494287	15	3.6	15	80	12	56	44	0	1	53	1.11
25494534--25494640	45	2.5	43	82	8	123	33	30	3	31	1.75
25494620--25494657	16	2.4	16	86	0	58	28	34	2	34	1.71
25496671--25497011	17	18.2	17	67	20	125	41	10	13	34	1.79
25496671--25496744	39	1.9	37	86	5	103	39	12	9	39	1.75
25496671--25496730	20	3.0	20	76	11	70	35	11	11	41	1.78
25496726--25496764	19	2.2	19	86	9	55	43	7	2	46	1.46
25496775--25497011	18	13.0	17	70	17	122	41	10	15	32	1.81
25496787--25497024	37	6.5	36	76	11	191	43	10	14	31	1.79
25497135--25497181	17	2.7	17	71	15	51	44	14	19	21	1.86
25497246--25497291	17	2.7	16	87	12	65	45	6	15	32	1.71
25498018--25498067	6	8.3	6	78	8	57	0	24	0	76	0.80
25498022--25498073	12	4.3	13	81	13	67	0	28	0	71	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25498022--25498073	24	2.2	25	89	6	81	0	28	0	71	0.87
25498163--25498191	15	2.0	15	93	6	51	0	34	0	65	0.93
25498600--25498787	29	6.5	29	76	10	145	40	3	23	32	1.70
25498630--25498786	58	2.7	58	79	10	187	40	3	23	32	1.70
25498600--25498785	87	2.1	87	82	6	225	40	3	23	32	1.71
25498630--25498786	29	5.4	29	80	7	158	40	3	23	32	1.70
25499145--25499287	76	1.9	76	86	5	207	32	19	16	30	1.94
25499213--25499375	87	1.9	87	90	2	265	32	20	15	31	1.93
25499297--25500505	81	15.3	81	82	9	1377	35	20	17	27	1.95
25499175--25500505	164	8.4	163	82	9	1517	34	20	17	27	1.95
25499103--25500502	320	4.4	317	82	7	1596	34	20	17	27	1.95
25501319--25501417	1	99.0	1	67	0	54	0	5	11	83	0.78
25501334--25501406	7	10.7	7	82	8	89	0	1	13	84	0.68
25501319--25501415	27	3.5	26	83	14	106	0	5	11	83	0.79
25501334--25501417	21	4.2	20	80	20	95	0	2	13	84	0.72
25507325--25507382	17	3.4	17	80	4	73	46	8	5	39	1.57
25507311--25507380	17	3.8	18	75	9	52	45	11	4	38	1.60
25507391--25507540	18	8.2	18	70	13	101	43	10	15	31	1.79
25507391--25507570	18	10.0	17	66	14	67	42	10	16	31	1.81
25507403--25507682	36	7.4	36	76	12	203	43	10	14	31	1.80
25507588--25507626	17	2.2	18	90	4	62	38	10	15	35	1.81
25507441--25507626	18	10.3	18	67	15	80	42	9	15	32	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25507859--25507904	17	2.7	16	87	12	65	45	6	15	32	1.71
25508692--25508737	17	2.7	16	87	12	65	45	6	15	32	1.71
25507637--25509298	833	2.0	833	100	0	3324	37	15	17	30	1.90
25509480--25509543	11	5.3	12	76	14	69	0	26	0	73	0.84
25509466--25509534	13	5.4	12	84	8	75	0	21	0	78	0.76
25509478--25509543	24	2.7	23	82	15	80	0	25	0	74	0.82
25509663--25509708	17	2.7	16	87	12	65	45	6	15	32	1.71
25510437--25510483	19	2.4	18	83	13	58	0	23	0	76	0.78
25510437--25510494	14	4.2	13	79	16	55	0	25	0	74	0.82
25508590--25510491	971	2.0	972	97	0	3641	28	17	18	34	1.94
25510581--25510611	15	2.1	14	94	5	53	0	35	0	64	0.94
25511207--25511253	19	2.4	18	83	13	58	0	23	0	76	0.78
25511207--25511264	14	4.2	13	79	16	55	0	25	0	74	0.82
25509842--25511379	770	2.0	769	98	0	2977	22	22	19	35	1.96
25511825--25511888	11	5.3	12	76	14	69	0	26	0	73	0.84
25511811--25511879	13	5.4	12	84	8	75	0	21	0	78	0.76
25511823--25511888	24	2.7	23	82	15	80	0	25	0	74	0.82
25511978--25512006	15	2.0	15	93	6	51	0	34	0	65	0.93
25512338--25512379	21	2.0	21	100	0	84	4	19	52	23	1.65
25512441--25512621	29	6.2	30	79	12	173	38	4	24	32	1.76
25512465--25512622	29	5.4	29	85	3	183	38	4	24	32	1.75
25512458--25512622	59	2.8	59	79	8	194	37	4	26	31	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25517213--25518091	457	1.9	457	100	0	1758	42	20	13	23	1.87
25520936--25520975	10	4.0	10	86	0	53	32	0	2	65	1.06
25521177--25521223	23	2.0	23	100	0	94	36	17	17	29	1.92
25522229--25522255	6	4.5	6	100	0	54	70	0	14	14	1.17
25522760--25522878	42	2.8	43	83	7	163	36	23	19	21	1.95
25522850--25523105	42	6.2	41	88	3	370	22	22	22	32	1.98
25522867--25523103	83	2.9	83	92	1	386	21	22	22	33	1.97
25522850--25523105	125	2.1	124	89	3	390	22	22	22	32	1.98
25527419--25527500	42	2.0	41	92	2	137	39	21	4	32	1.75
25528403--25528452	26	2.0	25	92	4	82	68	14	2	16	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205