genome.fa.s19.2.7.7.80.10.50.1000.183.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  183  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54421926--54422435	200	2.5	201	91	1	810	22	20	24	33	1.97
54422420--54423681	131	9.8	131	90	3	1984	24	23	22	29	1.99
54422640--54422823	44	4.2	45	65	15	107	26	22	21	29	1.99
54422936--54423167	116	2.0	116	94	0	410	25	22	22	29	1.99
54423308--54423487	44	4.1	45	65	16	99	25	24	20	30	1.98
54423582--54423721	44	3.2	44	64	27	116	28	24	22	25	1.99
54423455--54423899	218	2.0	218	92	0	737	25	23	21	28	1.99
54423586--54423768	87	2.1	87	93	2	314	27	22	21	27	1.99
54423324--54424030	349	2.0	349	92	1	1175	25	23	21	29	1.99
54423673--54424384	131	5.4	131	91	0	1091	25	24	21	28	1.99
54423542--54424336	262	3.0	258	79	8	761	25	24	21	28	1.99
54423062--54424292	611	2.0	611	91	1	2011	25	24	21	29	1.99
54423170--54424161	480	2.1	480	90	1	1567	25	24	21	29	1.99
54424343--54424733	44	8.9	43	83	4	415	22	27	21	29	1.99
54424350--54424735	88	4.4	88	90	1	560	22	27	21	29	1.99
54424341--54424735	132	3.0	131	81	2	477	22	27	21	29	1.99
54426029--54426062	14	2.3	15	90	5	52	14	5	0	79	0.91
54431862--54432084	50	4.4	50	77	6	211	22	17	24	35	1.95
54442084--54442315	77	3.0	77	99	0	455	28	20	20	31	1.97
54443825--54443891	35	1.9	35	96	3	127	35	13	29	20	1.91
54452664--54452780	62	1.9	60	86	5	164	49	5	3	41	1.41
54452740--54452803	29	2.1	31	83	13	80	46	7	3	42	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54452723--54452867	68	2.1	71	80	7	163	51	3	4	41	1.38
54456792--54456820	10	2.9	10	100	0	58	27	20	31	20	1.98
54457332--54457361	12	2.6	11	90	10	51	40	3	10	46	1.54
54462770--54462906	40	3.4	39	78	7	123	35	16	28	19	1.94
54468633--54468672	18	2.2	18	86	13	55	62	5	12	20	1.48
54469554--54469718	40	4.2	40	78	3	154	34	16	27	21	1.95
54469552--54469712	80	2.0	80	82	2	198	34	16	26	22	1.95
54474605--54474643	15	2.6	15	79	0	51	74	2	0	23	0.94
54482513--54482537	2	12.5	2	100	0	50	52	0	48	0	1.00
54483360--54483568	103	2.0	103	88	8	316	26	16	12	44	1.84
54492219--54492274	25	2.2	26	81	6	62	51	3	3	41	1.36
54493526--54493573	21	2.3	21	79	10	55	70	0	6	22	1.09
54493652--54493686	10	3.5	10	92	0	61	65	0	0	34	0.93
54493632--54493705	22	3.5	21	81	7	69	58	4	4	33	1.36
54493632--54493682	12	4.4	12	80	9	52	54	0	5	39	1.24
54493650--54493700	20	2.5	20	87	3	66	62	5	0	31	1.19
54494153--54494235	18	4.3	18	66	24	53	61	2	8	27	1.38
54495805--54496048	44	5.6	44	74	8	203	26	19	22	31	1.98
54495805--54496050	132	1.9	133	93	2	424	26	19	23	30	1.98
54496356--54498240	46	40.9	46	92	1	2741	31	25	16	27	1.96
54499111--54499429	97	3.1	106	79	11	356	50	8	14	27	1.70
54499694--54499749	5	11.8	5	77	11	64	0	17	0	82	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54499692--54499765	20	3.6	20	77	15	80	0	18	1	79	0.80
54499693--54499770	28	2.6	29	84	13	97	0	16	1	82	0.75
54503736--54504154	221	1.9	221	97	0	793	39	14	13	32	1.86
54504745--54504779	10	3.5	10	92	0	61	65	0	0	34	0.93
54504725--54504798	22	3.5	21	81	7	69	58	4	4	33	1.36
54504725--54504775	12	4.4	12	80	9	52	54	0	5	39	1.24
54504743--54504793	20	2.5	20	87	3	66	62	5	0	31	1.19
54509184--54509464	41	6.9	41	75	6	264	17	23	24	34	1.95
54509183--54509486	82	3.7	82	85	1	369	16	23	23	36	1.94
54509273--54509503	123	1.9	123	80	3	268	16	24	24	34	1.95
54510023--54510060	15	2.5	15	86	0	58	21	0	42	36	1.53
54510850--54510891	21	2.0	21	95	0	75	45	0	7	47	1.30
54511197--54511236	17	2.3	18	87	8	57	47	12	5	35	1.63
54511795--54511852	20	2.8	19	78	16	55	31	1	3	63	1.21
54511770--54511879	22	5.2	21	73	15	84	31	2	1	63	1.19
54511770--54511891	62	1.9	63	82	15	155	31	2	2	63	1.21
54511950--54512020	30	2.4	30	85	4	90	23	11	28	36	1.89
54520497--54521486	497	2.0	498	98	0	1901	30	25	13	31	1.93
54525056--54525098	18	2.4	18	80	7	52	65	2	2	30	1.18
54525999--54526232	96	2.5	95	80	7	253	29	12	8	49	1.70
54527224--54527337	61	2.0	59	89	10	182	38	6	12	42	1.67
54545793--54545993	41	4.9	40	79	7	208	35	26	19	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54553647--54553688	16	2.8	16	89	7	61	54	0	4	40	1.21
54556407--54556450	21	2.1	21	86	0	61	29	18	22	29	1.97
54558876--54558900	13	1.9	13	100	0	50	36	0	0	64	0.94
54558994--54559028	12	3.0	11	91	8	52	77	0	22	0	0.78
54559294--54559331	20	2.0	20	89	5	60	39	0	18	42	1.50
54560189--54560243	23	2.4	23	93	0	92	23	20	20	36	1.95
54560225--54560274	21	2.3	22	79	6	57	16	24	26	34	1.95
54560233--54560285	21	2.5	21	75	0	61	20	26	22	30	1.98
54560538--54560583	24	1.9	24	86	0	65	43	2	19	34	1.63
54561276--54561319	18	2.4	18	81	7	54	40	0	4	54	1.21
54574638--54574728	44	2.1	44	89	4	139	46	10	13	29	1.77
54576621--54576706	44	2.0	44	95	0	154	47	10	12	29	1.75
54593833--54593902	36	1.9	36	94	0	122	27	10	28	34	1.89
54594322--54594369	23	2.1	23	88	7	71	37	4	12	45	1.61
54617161--54617327	27	6.5	27	77	10	170	16	17	23	42	1.88
54617261--54617298	19	2.0	19	89	0	58	15	5	26	52	1.64
54617234--54617325	46	2.0	46	89	0	139	16	13	25	45	1.83
54619577--54619645	34	2.0	34	100	0	138	40	17	2	39	1.64
54627532--54627588	28	2.0	28	96	0	105	26	28	26	19	1.99
54627973--54628152	54	3.3	54	85	3	245	14	17	24	43	1.87
54627987--54628152	27	6.1	27	84	1	217	13	18	23	44	1.85
54628834--54628866	15	2.2	15	94	0	57	63	0	33	3	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54632832--54632909	13	5.8	13	71	15	52	0	19	10	70	1.15
54634396--54634451	28	2.0	28	100	0	112	32	14	10	42	1.80
54634401--54634460	28	2.1	28	84	0	75	35	18	8	38	1.81
54640276--54640323	24	1.9	25	87	8	71	31	22	12	33	1.91
54643187--54643219	6	5.5	6	92	0	57	27	0	21	51	1.48
54645699--54645743	20	2.3	20	96	3	83	31	35	17	15	1.92
54649465--54649512	22	2.3	22	82	10	57	37	4	4	54	1.39
54649623--54649669	18	2.5	20	72	10	53	36	0	6	57	1.24
54651863--54651923	18	3.4	18	67	13	54	57	0	4	37	1.20
54652888--54653045	79	2.0	79	92	0	262	28	13	17	39	1.88
54653515--54653601	25	3.5	24	82	6	111	12	24	13	49	1.77
54653566--54653608	20	2.2	20	86	0	59	11	25	11	51	1.72
54653565--54653623	30	2.0	30	82	0	73	10	27	11	50	1.71
54654583--54654621	17	2.4	16	87	8	60	35	0	5	58	1.20
54654887--54654919	15	2.2	15	89	10	50	30	0	3	66	1.06
54655705--54655772	32	2.1	33	86	8	95	36	14	5	42	1.70
54655872--54655896	6	4.2	6	100	0	50	0	68	0	32	0.90
54662205--54662250	22	2.0	23	84	12	60	4	8	28	58	1.47
54662522--54662555	13	2.7	13	90	4	52	2	14	5	76	1.09
54663599--54663731	27	4.9	27	82	0	149	42	18	18	20	1.89
54663593--54663742	54	2.8	54	80	4	167	40	19	18	22	1.91
54663906--54664007	26	3.9	26	77	0	105	15	18	25	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54664135--54664236	30	3.5	28	79	10	105	21	25	24	28	1.99
54664142--54664231	30	3.0	30	83	0	117	21	26	23	28	1.99
54666655--54666770	43	2.7	42	83	10	153	26	28	19	25	1.99
54667662--54667718	28	2.0	28	86	6	80	40	5	0	54	1.23
54671003--54671106	21	5.0	21	80	9	115	13	22	19	45	1.85
54671003--54671106	40	2.5	41	81	9	115	13	22	19	45	1.85
54671243--54671290	21	2.3	20	82	3	60	45	4	25	25	1.71
54678186--54678447	39	6.7	40	87	7	337	25	22	27	24	2.00
54684917--54685258	40	8.6	40	90	5	443	25	21	27	25	2.00
54688050--54688109	30	2.0	30	90	0	93	58	13	3	25	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205