genome.fa.s19.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  122  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36594457--36594553	27	3.6	27	90	2	140	27	13	28	29	1.94
36599713--36599738	13	2.0	13	100	0	52	46	0	0	53	1.00
36601959--36602008	24	2.1	23	88	3	73	16	16	10	58	1.63
36602716--36602751	18	2.0	18	94	0	63	25	33	30	11	1.90
36616515--36616568	24	2.2	25	75	24	62	29	3	5	61	1.36
36621815--36622342	262	2.0	262	97	0	993	27	14	23	34	1.93
36622915--36622962	17	2.6	19	81	15	57	50	0	12	37	1.41
36625590--36625687	40	2.5	40	83	6	119	42	26	18	12	1.85
36625666--36625707	21	2.0	21	90	0	66	42	19	23	14	1.87
36632355--36632432	29	2.7	29	81	0	84	28	15	16	39	1.89
36635506--36635865	27	13.4	27	81	3	404	42	19	19	19	1.90
36636043--36636113	26	2.7	26	86	0	106	21	25	16	36	1.94
36636220--36636330	28	4.0	28	87	0	150	21	21	26	30	1.98
36643199--36643386	27	7.0	27	84	6	238	42	19	20	18	1.89
36643196--36643386	81	2.4	80	87	7	278	42	19	20	17	1.89
36643547--36643632	26	3.3	26	88	1	91	19	25	19	34	1.96
36643565--36643635	26	2.7	26	95	0	124	18	25	19	36	1.94
36656043--36656121	37	2.1	37	90	0	122	25	31	18	24	1.98
36656240--36656650	47	8.7	47	97	0	750	29	30	8	32	1.86
36657746--36658009	85	3.1	85	99	0	519	26	27	8	37	1.85
36659422--36659607	40	4.7	40	88	2	266	26	27	22	23	1.99
36659767--36659834	23	3.1	23	62	30	58	33	26	1	38	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36659750--36659834	42	2.0	42	97	0	161	32	25	2	38	1.69
36670898--36670927	15	1.9	16	93	6	53	13	10	3	73	1.21
36680001--36680370	182	2.0	182	96	0	677	37	13	20	29	1.90
36685832--36685866	18	1.9	18	94	0	61	60	0	22	17	1.37
36686950--36687091	39	3.6	40	89	1	200	42	21	4	31	1.74
36689062--36689094	17	1.9	17	100	0	66	18	30	39	12	1.87
36692575--36692777	101	2.0	100	97	2	253	45	9	15	29	1.79
36699200--36699235	8	4.5	8	100	0	72	52	36	0	11	1.37
36705782--36705820	19	2.0	20	85	5	53	15	23	38	23	1.92
36716524--36716605	24	3.5	24	73	15	82	34	15	12	37	1.85
36716708--36716740	11	3.2	11	83	16	52	63	18	0	18	1.31
36716709--36716755	9	4.9	9	84	10	58	57	19	0	23	1.41
36716709--36716755	20	2.4	19	89	3	67	57	19	0	23	1.41
36716709--36716766	20	3.1	19	80	11	59	58	15	0	25	1.37
36716894--36716969	39	1.9	39	89	0	116	39	17	10	32	1.83
36718330--36718468	70	2.0	70	95	0	251	49	10	20	20	1.77
36718871--36718977	50	2.1	50	80	0	124	19	29	24	26	1.98
36723084--36723223	69	2.0	69	97	0	262	34	6	21	37	1.79
36723812--36723949	50	2.6	53	80	6	156	23	19	31	26	1.98
36724255--36724293	20	2.0	20	90	10	62	56	5	23	15	1.59
36729459--36729600	50	2.8	50	80	0	140	21	27	23	27	1.99
36736476--36736558	24	3.6	23	76	16	91	32	15	14	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36736476--36736567	45	2.0	45	87	0	130	30	18	14	36	1.90
36750239--36750271	17	1.9	18	88	11	52	45	0	12	42	1.41
36752664--36752745	24	3.3	26	72	18	66	60	0	0	39	0.96
36756080--36756118	19	2.1	19	90	0	60	20	30	20	28	1.98
36774453--36774543	45	2.0	45	85	2	121	37	28	6	27	1.82
36784496--36784758	40	6.6	40	88	3	325	24	20	27	26	1.99
36784535--36784793	80	3.3	80	85	3	256	25	20	27	25	1.99
36787996--36789366	686	2.0	686	96	0	2530	33	13	19	32	1.91
36790815--36791582	27	28.3	27	74	7	446	39	17	20	22	1.92
36790897--36791681	410	1.9	410	91	0	1284	37	17	20	24	1.93
36791732--36791831	26	3.8	26	80	9	89	19	22	22	37	1.95
36791938--36792029	28	3.2	28	84	7	121	26	26	20	27	1.99
36791949--36792029	30	2.8	29	87	7	112	24	27	22	25	2.00
36798758--36799004	27	9.1	27	91	0	343	44	21	19	15	1.87
36800754--36800806	28	1.9	27	84	3	70	16	9	7	66	1.43
36810878--36810918	2	20.5	2	100	0	82	0	51	0	48	1.00
36811386--36811422	19	1.9	19	94	0	65	35	0	2	62	1.10
36812446--36812671	43	5.3	43	80	3	226	26	27	17	27	1.98
36812456--36812614	86	1.9	86	90	1	257	24	28	16	30	1.97
36814345--36814553	106	2.0	101	88	6	312	24	12	12	49	1.76
36814690--36814837	75	2.0	76	91	1	244	29	12	11	46	1.77
36815589--36815629	21	1.9	22	85	5	57	41	39	0	19	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36815629--36815670	14	2.9	14	82	6	57	35	35	0	28	1.58
36815625--36815671	15	3.3	15	82	8	62	40	31	0	27	1.57
36816182--36816396	113	1.9	113	93	1	369	27	27	21	23	1.99
36819288--36819405	60	2.0	59	96	1	218	33	0	13	53	1.40
36819658--36819698	20	2.0	21	85	9	57	70	2	0	26	0.99
36820606--36820653	22	2.2	22	92	0	78	31	10	10	47	1.71
36826356--36826509	61	2.5	61	81	4	177	24	25	14	35	1.93
36826342--36826489	60	2.4	59	82	5	170	27	26	14	31	1.95
36830531--36830595	32	2.1	32	94	2	114	29	9	13	47	1.74
36830902--36830959	29	2.1	27	81	18	66	25	6	0	67	1.16
36831115--36831235	45	2.7	45	96	1	215	66	10	14	9	1.45
36831610--36831667	29	2.1	27	81	18	66	25	6	0	67	1.16
36830554--36832681	708	3.0	707	93	2	3449	32	13	15	37	1.87
36831823--36831943	45	2.7	45	96	1	215	66	10	14	9	1.45
36832328--36832385	29	2.1	27	81	18	66	25	6	0	67	1.16
36832543--36832659	43	2.7	43	96	1	209	64	11	15	9	1.50
36838171--36838392	31	7.1	31	89	6	340	31	8	14	45	1.74
36838171--36838392	63	3.5	63	88	6	344	31	8	14	45	1.74
36838174--36838392	94	2.3	94	92	3	352	31	8	14	45	1.75
36841124--36841158	16	2.1	18	89	10	56	60	0	5	34	1.21
36844595--36844620	7	3.7	7	100	0	52	61	0	0	38	0.96
36845041--36845070	12	2.6	11	90	10	51	13	30	10	46	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36852843--36852884	23	1.9	23	90	9	70	23	0	4	71	1.05
36855055--36855111	21	2.8	19	80	12	60	59	5	5	29	1.41
36855055--36855113	20	2.9	20	82	9	66	59	5	6	28	1.45
36858053--36858143	38	2.4	38	83	0	101	42	24	14	18	1.87
36858387--36858429	21	2.0	21	90	0	68	23	11	11	53	1.69
36865446--36865507	24	2.6	24	84	5	81	37	22	22	17	1.94
36871726--36871773	25	2.0	25	87	4	71	39	18	25	16	1.91
36872999--36873073	29	2.6	29	82	4	80	54	1	5	38	1.31
36873258--36873337	3	26.7	3	79	0	79	57	3	6	32	1.41
36873292--36873346	18	3.2	17	82	15	69	54	0	14	30	1.41
36874402--36874438	18	2.1	18	94	0	65	8	0	45	45	1.32
36875210--36875377	44	3.8	44	71	11	144	27	23	15	33	1.95
36875215--36875401	92	2.0	91	92	1	311	29	21	16	31	1.96
36875744--36876078	46	7.3	46	90	2	530	31	25	16	25	1.96
36876028--36876764	174	4.2	174	85	5	814	25	24	23	27	2.00
36876028--36876764	88	8.4	87	85	4	801	25	24	23	27	2.00
36876323--36876458	44	3.1	43	71	14	127	25	25	25	23	2.00
36876543--36876674	43	3.1	43	63	16	110	24	22	23	29	1.99
36877544--36877863	102	3.0	104	90	4	482	49	8	16	25	1.74
36878135--36878227	5	19.0	5	81	16	99	0	17	0	82	0.66
36878129--36878232	20	5.2	20	86	13	137	0	17	0	82	0.66
36878143--36878244	45	2.3	43	83	16	102	0	14	1	83	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36878129--36878224	21	4.7	19	83	13	86	0	16	0	83	0.65
36878138--36878245	1	108.0	1	66	0	54	0	14	1	83	0.73
36878342--36878378	18	2.1	18	94	0	65	8	0	45	45	1.32
36880095--36880119	4	6.2	4	100	0	50	24	0	0	76	0.80
36881261--36881285	12	2.1	12	100	0	50	40	8	24	28	1.83
36881647--36881682	18	2.0	18	88	0	54	33	0	2	63	1.08
36882399--36882522	62	2.0	62	96	0	230	28	10	13	47	1.76
36883835--36883877	19	2.2	19	83	8	50	55	0	0	44	0.99
36883865--36883900	19	1.9	18	88	5	54	61	0	2	36	1.11
36884895--36884958	26	2.5	27	75	22	66	39	0	1	59	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205