genome.fa.s19.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  22  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6709534--6709723	25	7.8	24	71	9	107	33	22	25	18	1.97
6711980--6712009	8	3.6	8	95	4	51	76	0	23	0	0.78
6713257--6713286	13	2.4	13	94	5	53	73	6	0	20	1.05
6721312--6721360	20	2.5	19	80	9	62	71	2	4	22	1.13
6722230--6722262	13	2.5	13	100	0	66	48	15	0	36	1.45
6725991--6726067	24	3.2	24	94	0	136	42	25	0	31	1.55
6728058--6728429	46	8.6	45	82	12	442	29	22	14	34	1.93
6728193--6728347	36	4.0	36	79	15	175	28	20	14	36	1.92
6728147--6728393	82	3.0	82	94	0	422	29	21	13	35	1.92
6728058--6728429	128	2.9	123	82	12	398	29	22	14	34	1.93
6732184--6732244	13	4.8	13	75	20	58	45	9	1	42	1.47
6736395--6736432	17	2.3	17	90	4	60	55	0	7	36	1.29
6737247--6737322	40	1.9	39	89	2	116	32	11	28	26	1.92
6738611--6738668	25	2.3	25	90	0	89	51	6	17	24	1.69
6742287--6742326	21	1.9	21	89	0	62	45	25	7	22	1.78
6754474--6754517	21	2.2	20	88	8	63	40	4	18	36	1.71
6761407--6761448	16	2.7	15	82	10	57	19	7	0	73	1.05
6761408--6761449	17	2.5	17	92	3	68	19	7	0	73	1.05
6761574--6761603	14	2.1	15	93	6	53	23	0	10	66	1.21
6762166--6762207	13	3.3	13	80	3	50	45	0	0	54	0.99
6770620--6770933	110	2.9	110	85	7	448	34	17	17	31	1.93
6771128--6771205	41	1.9	41	86	5	113	51	3	11	33	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6773148--6773191	20	2.2	20	92	4	72	65	2	0	31	1.05
6775375--6775405	13	2.4	13	94	0	53	45	0	6	48	1.28
6776241--6776284	21	2.1	21	87	8	63	40	11	11	36	1.77
6776906--6776944	19	2.1	19	85	0	51	53	7	5	33	1.51
6780939--6781005	31	2.1	31	83	2	80	43	10	10	35	1.73
6781079--6781108	13	2.2	14	94	5	53	10	6	6	76	1.15
6781771--6781831	26	2.3	26	89	8	97	65	0	1	32	1.02
6782364--6782401	17	2.2	17	86	9	51	28	10	0	60	1.30
6792131--6792196	18	3.7	18	91	0	105	39	12	16	31	1.85
6794319--6794357	19	2.1	19	90	0	60	53	17	23	5	1.63
6794332--6794406	25	3.0	25	88	0	123	49	24	22	4	1.67
6798640--6798672	17	2.0	16	94	5	57	6	12	15	66	1.42
6805158--6805572	126	3.3	125	92	2	663	30	16	23	28	1.97
6805585--6805731	22	7.4	21	81	16	138	28	0	29	41	1.56
6805630--6805760	52	2.6	50	86	4	183	29	0	29	41	1.56
6805643--6805704	15	4.1	15	91	2	97	32	0	25	41	1.56
6805698--6805760	27	2.2	29	83	8	85	25	0	33	41	1.56
6805674--6805760	22	3.8	22	73	15	77	28	0	29	41	1.56
6806969--6806993	7	3.6	7	100	0	50	60	12	0	28	1.32
6807163--6807200	20	1.9	20	84	10	51	55	7	2	34	1.43
6808207--6808274	11	6.0	11	81	10	75	42	1	30	25	1.64
6808220--6808274	22	2.4	23	87	6	85	43	1	29	25	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6808207--6808274	33	2.0	35	85	5	95	42	1	30	25	1.64
6809006--6809044	19	2.0	21	85	10	55	23	0	10	66	1.22
6809121--6809146	3	8.7	3	100	0	52	0	0	30	69	0.89
6811602--6812068	159	3.0	154	71	13	401	31	11	7	48	1.69
6812870--6813006	5	28.6	5	76	14	71	0	32	0	67	0.91
6812879--6813005	4	31.0	4	72	20	77	0	31	0	68	0.90
6812861--6813002	27	5.3	27	74	22	99	0	32	0	67	0.91
6812823--6813014	67	2.9	68	81	12	222	1	32	0	66	0.99
6812860--6813004	40	3.6	41	81	16	153	0	31	0	68	0.90
6813135--6813182	24	2.0	24	87	0	69	56	0	4	39	1.19
6821964--6821996	5	6.6	5	100	0	66	21	0	21	57	1.41
6823356--6823416	29	2.0	30	84	6	79	29	14	14	40	1.86
6824173--6824243	11	6.3	11	80	16	67	43	2	26	26	1.68
6825628--6825665	18	2.1	18	90	9	60	31	0	0	68	0.90
6833090--6833140	26	2.0	26	96	0	93	29	13	11	45	1.79
6833458--6833534	14	5.0	15	71	20	52	42	14	9	33	1.77
6833474--6833513	20	2.0	20	90	0	62	50	12	10	27	1.72
6833462--6833528	34	1.9	35	90	3	109	46	13	8	31	1.74
6835564--6835616	28	2.0	26	82	14	63	58	5	1	33	1.32
6836623--6836718	31	3.1	31	95	3	174	45	13	9	31	1.75
6841761--6841822	23	2.6	24	80	7	65	0	14	9	75	1.03
6841771--6841826	24	2.3	25	82	14	73	0	14	8	76	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6841801--6841862	9	7.1	9	77	14	51	3	8	11	77	1.09
6841909--6842004	31	3.1	31	95	3	174	45	13	9	31	1.75
6844285--6844337	25	2.1	25	100	0	106	43	26	0	30	1.55
6846809--6846846	18	2.1	18	90	9	60	47	21	5	26	1.71
6848917--6848972	27	2.1	27	93	0	94	55	12	7	25	1.62
6851155--6851225	20	3.5	20	74	12	74	28	8	15	47	1.74
6864482--6864510	13	2.2	13	100	0	58	68	20	0	10	1.18
6865785--6865833	23	2.1	22	82	10	62	48	16	10	24	1.76
6869536--6869571	5	7.2	5	93	0	63	19	55	2	22	1.56
6888545--6888592	20	2.3	21	82	17	64	39	2	0	58	1.10
6888545--6888592	21	2.3	22	86	13	66	39	2	0	58	1.10
6888972--6889004	5	6.6	5	100	0	66	81	0	0	18	0.68
6888997--6889037	20	2.0	21	86	13	59	46	2	2	48	1.28
6888550--6889437	220	4.0	220	91	4	1319	51	5	5	37	1.49
6889192--6889224	5	6.6	5	100	0	66	81	0	0	18	0.68
6889217--6889257	20	2.0	21	86	13	59	46	2	2	48	1.28
6896839--6896880	14	3.1	14	77	16	52	30	7	26	35	1.83
6896996--6897044	21	2.6	18	77	9	53	65	2	4	28	1.22
6897299--6897381	4	20.8	4	97	0	157	49	26	0	24	1.51
6899506--6899548	21	2.0	21	90	0	68	16	16	25	41	1.88
6900539--6900694	43	3.6	43	85	3	206	30	26	21	21	1.98
6900751--6900776	13	2.0	13	100	0	52	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6902969--6903019	26	1.9	27	92	4	86	13	25	17	43	1.86
6907121--6907336	72	3.0	72	100	0	432	36	19	6	37	1.79
6922236--6922261	2	13.0	2	100	0	52	50	0	0	50	1.00
6924647--6924693	21	2.3	21	82	14	62	34	10	17	38	1.84
6925673--6925773	45	2.3	45	89	1	159	57	21	2	17	1.53
6927456--6927502	21	2.3	21	82	14	62	34	10	17	38	1.84
6928900--6928946	10	4.8	10	76	5	51	68	2	0	29	1.02
6928893--6928935	19	2.1	21	87	8	63	58	4	0	37	1.19
6931599--6931670	20	3.5	20	72	12	65	54	4	4	37	1.39
6936302--6936332	14	2.1	15	94	5	55	38	9	0	51	1.35
6936303--6936344	20	2.2	20	87	12	61	40	9	0	50	1.35
6942749--6942927	89	2.0	89	98	0	349	27	13	25	33	1.93
6944934--6944985	25	2.1	25	85	0	68	30	9	5	53	1.57
6946127--6946170	24	1.9	22	90	9	70	34	0	0	65	0.93
6946358--6946399	16	2.6	16	92	0	66	42	7	2	47	1.43
6946414--6946442	6	4.8	6	100	0	58	34	0	0	65	0.93
6957731--6957771	8	4.9	8	85	8	55	63	2	0	34	1.08
6957733--6957820	9	9.7	9	74	16	58	63	2	2	31	1.19
6957731--6957763	17	1.9	17	93	0	57	63	3	0	33	1.10
6975522--6975621	50	2.0	50	96	0	182	30	8	24	38	1.84
6975782--6975844	33	1.9	33	90	0	99	19	0	14	66	1.25
6976644--6976709	33	2.0	33	96	0	123	25	18	16	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6976777--6976809	16	2.1	16	100	0	66	51	0	18	30	1.46
6979804--6979974	66	2.6	65	85	4	218	40	19	28	12	1.87
6979945--6980037	21	4.4	21	86	0	96	35	17	43	4	1.69
6980414--6980597	43	4.3	43	88	1	244	27	16	31	24	1.96
6980414--6980658	129	1.9	129	80	1	285	26	20	28	24	1.99
6980409--6980729	43	7.5	43	79	5	240	28	22	26	23	1.99
6980839--6980883	22	2.1	21	91	4	72	42	28	17	11	1.84
6981486--6981634	42	3.5	42	75	3	138	38	18	20	22	1.93
6984429--6984463	18	1.9	18	88	0	52	65	0	14	20	1.26
6989274--6989317	21	2.0	23	86	8	65	34	18	27	20	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205