genome.fa.s19.2.7.7.80.10.50.1000.204.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  204  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60471622--60471663	16	2.7	15	85	7	57	38	2	2	57	1.25
60471847--60472012	19	8.7	19	65	23	75	51	13	0	34	1.45
60471847--60471929	27	3.1	27	92	1	141	49	13	1	36	1.50
60477102--60477188	44	2.0	44	100	0	174	25	11	9	54	1.66
60492565--60492600	18	2.0	18	88	0	54	16	13	2	66	1.36
60494591--60494676	20	4.3	19	75	12	68	43	16	5	34	1.72
60494639--60494676	20	1.9	20	100	0	76	50	13	0	36	1.42
60494640--60494803	20	8.2	20	69	17	72	45	12	2	39	1.55
60494706--60494781	22	3.8	20	75	11	68	43	9	2	44	1.50
60494799--60494965	87	1.9	86	83	8	214	38	12	2	45	1.57
60525345--60525410	34	1.9	34	96	0	123	31	12	33	22	1.91
60529246--60529296	23	2.3	23	86	6	70	56	0	1	41	1.10
60529237--60529300	23	2.8	23	75	11	60	60	0	1	37	1.06
60529266--60529309	21	2.1	20	84	16	54	63	2	0	34	1.07
60529822--60529942	18	6.5	18	71	16	68	26	4	1	67	1.18
60529850--60529942	9	9.8	9	75	18	82	27	4	1	66	1.17
60529866--60529919	21	2.7	21	85	5	67	25	5	0	68	1.11
60529850--60529941	20	4.8	19	76	19	77	27	4	1	67	1.16
60534277--60534318	15	2.7	16	82	14	52	45	0	2	52	1.13
60534268--60534309	15	2.9	15	82	10	52	47	0	0	52	1.00
60534421--60534455	18	2.0	17	88	5	52	45	0	0	54	0.99
60534249--60534561	157	2.0	157	96	0	581	47	4	2	45	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60534691--60534722	16	2.0	16	100	0	64	37	37	0	25	1.56
60538244--60538481	118	2.0	116	91	3	379	31	21	17	29	1.96
60539841--60539914	38	1.9	38	94	0	130	45	10	9	33	1.71
60543013--60543045	15	2.2	15	100	0	66	36	0	6	57	1.23
60544416--60544473	22	2.6	22	79	12	66	43	20	3	32	1.69
60550027--60550084	22	2.7	21	82	10	80	44	18	3	32	1.67
60570717--60570786	25	2.8	25	82	0	86	21	25	17	35	1.95
60576524--60576574	27	2.0	25	82	14	61	49	0	3	47	1.20
60579044--60579138	45	2.1	45	88	1	138	32	27	5	34	1.79
60579117--60579149	16	2.1	16	94	0	57	30	36	0	33	1.58
60579130--60579172	21	2.0	21	95	0	77	34	37	0	27	1.57
60585092--60585142	26	2.0	26	100	0	102	35	31	15	17	1.92
60588264--60588410	57	2.5	60	79	10	178	30	19	25	24	1.98
60588533--60588661	67	1.9	67	96	0	240	21	15	33	29	1.94
60592297--60592335	16	2.4	16	82	0	51	35	10	2	51	1.50
60592329--60592387	27	2.2	27	82	11	68	30	6	3	59	1.40
60596405--60596440	16	2.2	16	90	0	54	83	5	2	8	0.89
60597305--60597343	20	2.0	20	94	0	69	71	0	12	15	1.14
60597301--60597344	7	6.6	7	79	10	56	68	0	15	15	1.22
60598557--60599150	88	6.8	88	89	0	818	26	23	24	25	2.00
60599001--60599139	44	3.2	44	66	11	104	24	28	26	20	1.99
60599699--60600030	50	6.6	50	77	10	313	32	20	18	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60599699--60600656	100	9.6	99	84	4	950	32	22	20	24	1.98
60599749--60600623	50	17.6	49	68	8	417	32	22	20	24	1.98
60601316--60601565	132	1.9	132	95	0	455	30	20	23	26	1.98
60601454--60601654	89	2.3	89	94	2	352	30	20	21	26	1.98
60601631--60601842	44	4.8	44	69	11	146	30	18	25	25	1.98
60601322--60601786	221	2.1	220	95	1	833	30	20	23	26	1.98
60601542--60601970	132	3.2	132	93	1	716	31	19	23	26	1.98
60603405--60603429	3	8.3	3	100	0	50	32	0	0	68	0.90
60603518--60603556	16	2.4	16	82	0	51	35	10	2	51	1.50
60610256--60610317	21	2.9	21	79	9	63	59	0	0	40	0.97
60612451--60612478	6	4.7	6	100	0	56	85	14	0	0	0.59
60615584--60615822	119	2.0	119	100	0	478	35	13	19	30	1.90
60625935--60626067	43	3.1	42	89	4	187	26	25	18	29	1.98
60629978--60630018	22	1.9	21	85	14	57	56	24	0	19	1.42
60630042--60630111	16	4.4	16	67	16	56	50	21	1	27	1.57
60630045--60630120	23	3.3	23	73	23	86	48	22	1	27	1.58
60630547--60630747	41	4.9	40	87	6	278	38	26	16	17	1.92
60630522--60630747	123	1.8	124	82	8	291	38	26	18	16	1.92
60632850--60632902	12	4.2	12	75	13	52	41	3	11	43	1.58
60633157--60633276	41	2.9	41	87	2	152	27	17	24	30	1.97
60635520--60635568	13	3.6	14	84	13	59	51	2	0	46	1.12
60636173--60636214	19	2.4	19	84	11	54	35	11	0	52	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60637956--60637988	16	2.1	16	94	0	57	15	9	27	48	1.74
60639516--60639585	34	2.1	34	97	0	131	20	12	21	45	1.84
60642456--60642590	57	2.3	56	83	7	155	42	0	4	51	1.27
60646519--60646614	44	2.2	45	92	1	158	30	12	12	44	1.79
60648594--60648652	29	2.0	30	93	3	102	49	15	6	28	1.70
60648693--60648740	21	2.3	21	85	7	62	56	8	0	35	1.30
60649040--60649091	11	4.7	11	86	6	61	25	28	0	46	1.53
60649049--60649095	23	2.1	23	88	4	69	31	25	0	42	1.55
60649493--60649544	10	4.7	11	77	15	54	26	26	0	46	1.53
60651446--60651477	12	2.7	12	100	0	64	40	0	6	53	1.26
60652560--60652613	21	2.6	21	79	2	65	14	20	24	40	1.90
60652863--60653159	96	3.1	97	77	6	300	40	17	3	39	1.65
60653189--60653244	27	2.0	29	89	6	89	50	33	0	16	1.45
60653973--60654031	30	2.0	30	93	0	100	25	1	15	57	1.47
60655539--60655577	21	1.9	20	84	5	51	46	33	10	10	1.72
60658217--60658241	13	1.9	13	100	0	50	24	8	0	68	1.16
60658940--60659008	22	3.1	22	78	17	72	26	8	2	62	1.39
60663811--60663864	28	2.0	28	82	13	69	53	3	0	42	1.18
60677788--60677967	59	3.1	59	100	0	360	33	3	27	36	1.73
60680002--60680042	21	2.0	21	85	0	55	24	9	7	58	1.55
60687277--60687334	30	1.9	30	89	0	89	41	3	24	31	1.71
60687546--60687577	13	2.5	13	94	0	55	31	0	12	56	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60687672--60687856	50	3.7	50	99	0	361	26	23	32	16	1.96
60698858--60699064	93	2.1	98	81	8	237	29	28	16	26	1.97
60698876--60699068	47	4.0	48	83	8	205	30	28	16	24	1.96
60702166--60702300	46	2.8	46	84	7	144	17	25	20	35	1.95
60702215--60702368	53	2.8	54	82	5	186	20	25	18	35	1.96
60702215--60702368	55	2.9	52	80	5	164	20	25	18	35	1.96
60703967--60704218	40	6.3	40	86	1	346	28	28	21	21	1.99
60703967--60704218	79	3.2	79	86	2	346	28	28	21	21	1.99
60703967--60704234	119	2.3	119	90	1	412	28	27	21	21	1.99
60712387--60712422	7	5.1	7	93	0	63	55	2	0	41	1.14
60714506--60714535	14	2.1	14	93	0	51	50	0	0	50	1.00
60714586--60714640	21	2.8	20	78	15	69	49	0	3	47	1.19
60723163--60723199	16	2.3	16	90	0	56	40	0	0	59	0.97
60727792--60727851	30	2.0	30	96	0	111	10	15	26	48	1.76
60728337--60728421	22	3.9	22	81	7	93	37	1	3	57	1.23
60737591--60737635	20	2.2	20	88	7	65	37	13	6	42	1.70
60749549--60749612	30	2.0	32	88	8	96	28	23	18	29	1.98
60754079--60754149	33	2.2	33	94	0	124	38	4	18	39	1.70
60754626--60754669	23	1.9	23	85	0	61	40	11	6	40	1.68
60756131--60756180	17	2.7	20	78	18	70	10	0	44	46	1.37
60756805--60756900	48	2.0	48	100	0	192	39	16	20	22	1.92
60760818--60760867	17	2.7	20	78	18	70	10	0	44	46	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60763378--60763407	14	2.1	15	93	6	53	53	3	6	36	1.44
60764144--60764201	25	2.3	25	96	3	107	31	6	18	43	1.77
60778671--60778700	7	4.4	7	95	4	53	23	0	0	76	0.78
60779410--60779496	43	2.0	43	100	0	174	37	9	25	27	1.86
60784172--60784239	32	2.1	32	97	0	127	42	17	20	19	1.89
60791737--60791857	42	2.8	43	83	3	138	32	27	17	23	1.96
60794835--60794886	24	2.2	24	85	0	68	51	9	5	32	1.58
60796375--60796516	35	4.1	35	99	0	275	33	11	5	50	1.62
60796821--60796862	21	2.0	22	90	4	68	61	0	2	35	1.09
60796821--60796863	22	2.0	22	86	9	61	62	0	2	34	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205