genome.fa.s19.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  142  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43184862--43185234	132	2.8	132	86	1	498	31	21	20	26	1.98
43185015--43185228	44	4.9	44	71	6	164	32	18	23	25	1.97
43185221--43185732	50	10.3	50	73	5	340	31	23	20	24	1.98
43185216--43185633	100	4.2	99	87	1	595	30	23	20	24	1.98
43185216--43185682	100	4.7	100	85	2	546	31	23	20	24	1.98
43185772--43185884	44	2.5	45	81	8	122	28	16	23	31	1.96
43186068--43186231	47	3.6	45	81	4	186	29	21	22	25	1.99
43188041--43188107	12	5.6	12	74	0	53	43	11	1	43	1.50
43191322--43191392	31	2.2	33	85	10	92	22	29	12	35	1.91
43193625--43193672	23	2.1	23	96	0	87	25	41	8	25	1.83
43193741--43193784	23	1.9	23	95	0	79	29	0	9	61	1.27
43193741--43193782	13	3.5	13	75	18	54	30	0	9	59	1.29
43193742--43193791	23	2.2	23	88	0	73	30	2	10	58	1.42
43193817--43193904	33	2.4	38	81	18	141	44	6	10	38	1.65
43194908--43195155	43	5.8	43	76	7	220	27	28	21	22	1.99
43195081--43195198	43	2.7	43	81	1	119	32	26	17	23	1.97
43195292--43195342	16	2.9	17	80	11	50	68	3	0	27	1.07
43195289--43195342	9	6.2	9	75	14	51	68	3	0	27	1.06
43195505--43195617	21	5.4	21	85	0	109	4	40	17	37	1.70
43195593--43195753	66	2.4	66	83	4	200	13	27	18	40	1.88
43201211--43201315	25	4.2	25	78	11	115	32	1	19	46	1.60
43201222--43201472	9	28.8	9	70	12	157	31	2	20	45	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43201214--43201313	51	2.0	50	86	2	137	32	2	20	46	1.62
43201495--43201538	16	2.7	16	96	3	79	38	0	22	38	1.55
43201708--43202029	100	3.2	99	92	3	520	49	4	7	39	1.50
43201724--43202027	98	3.1	98	95	0	536	48	3	7	39	1.51
43202436--43202522	7	12.3	7	82	2	111	71	12	12	3	1.27
43203321--43203345	10	2.5	10	100	0	50	32	8	12	48	1.69
43203793--43204204	198	2.1	198	89	2	641	33	19	17	29	1.95
43204594--43204685	47	2.0	47	84	0	121	46	3	7	42	1.48
43204673--43204721	19	2.6	19	81	12	66	14	4	2	79	0.97
43204681--43204721	18	2.3	18	91	4	66	12	4	0	82	0.81
43204758--43204784	14	1.9	14	100	0	54	44	7	0	48	1.31
43204919--43204954	7	5.3	7	90	6	56	36	50	0	13	1.43
43204993--43205113	21	5.9	20	75	12	93	33	42	0	23	1.60
43205020--43205113	7	13.4	7	80	4	73	31	43	1	23	1.61
43205169--43205222	7	7.7	7	91	0	90	33	51	0	14	1.43
43205171--43205229	14	4.2	14	88	0	82	35	47	0	16	1.47
43205169--43205229	21	2.9	21	97	0	113	34	49	0	16	1.46
43204918--43205225	158	1.9	158	83	6	401	38	36	0	24	1.60
43205764--43205903	74	1.9	75	85	7	196	29	22	17	30	1.97
43205638--43206032	188	2.1	188	90	0	619	30	22	15	31	1.94
43205838--43206416	114	5.1	115	72	10	422	30	20	15	32	1.94
43205822--43206416	227	2.6	226	87	3	804	30	20	15	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43211592--43211645	16	3.4	16	92	0	81	35	0	33	31	1.58
43211624--43211714	45	2.0	44	85	2	119	32	5	27	34	1.80
43213566--43213604	20	2.0	20	100	0	78	30	25	17	25	1.97
43221818--43221868	25	2.0	25	88	7	77	62	1	3	31	1.24
43222289--43222336	24	2.0	24	83	4	60	27	0	6	66	1.15
43222286--43222346	25	2.3	26	83	10	72	27	1	4	65	1.22
43222569--43222600	8	4.1	8	92	8	57	25	0	0	75	0.81
43222570--43222600	15	2.1	15	100	0	62	25	0	0	74	0.82
43222573--43222609	15	2.5	15	90	0	56	32	0	0	67	0.91
43228633--43228658	13	2.0	13	100	0	52	46	23	7	23	1.78
43230808--43230960	76	2.0	76	92	0	252	42	5	9	42	1.60
43247756--43247812	21	2.7	21	94	0	105	42	10	10	36	1.74
43252501--43252546	24	1.9	24	86	0	65	45	17	26	10	1.81
43256295--43256621	44	7.4	44	63	13	125	32	18	22	26	1.97
43256254--43256909	132	5.0	132	93	0	1060	31	19	23	25	1.98
43256967--43257107	40	3.4	40	72	11	149	26	21	21	29	1.99
43256924--43257151	84	2.7	83	89	5	318	28	20	22	29	1.98
43257003--43257601	44	13.9	41	70	15	245	27	20	23	28	1.99
43257051--43257599	217	2.5	217	91	0	893	27	20	23	28	1.99
43256967--43257599	84	7.4	85	72	12	354	27	20	23	28	1.99
43257694--43257780	44	2.0	43	80	10	97	24	22	26	26	2.00
43257945--43257985	19	2.2	19	95	0	73	36	7	17	39	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43261708--43261820	49	2.3	49	82	1	127	24	19	23	31	1.98
43269920--43269944	13	1.9	13	100	0	50	60	16	8	16	1.58
43273087--43273122	18	2.0	18	94	0	63	77	0	8	13	0.98
43278315--43278352	20	1.9	20	89	10	60	23	0	7	68	1.16
43284345--43284384	21	1.9	21	84	0	53	45	30	0	25	1.54
43284450--43284503	14	3.9	14	80	9	65	46	25	0	27	1.53
43284820--43284988	40	4.3	40	83	5	202	27	23	20	28	1.98
43284820--43284992	76	2.2	79	83	4	217	27	23	20	29	1.99
43285045--43285165	39	3.1	40	84	3	156	25	20	22	31	1.98
43286111--43286147	19	1.9	19	94	0	65	32	27	13	27	1.94
43295870--43296493	108	5.8	108	91	3	977	33	19	17	30	1.95
43295870--43296493	217	2.9	217	92	1	1029	33	19	17	30	1.95
43295848--43296487	325	2.0	325	90	2	1027	33	19	17	30	1.95
43296509--43296726	108	2.0	107	99	0	427	51	11	11	25	1.72
43296532--43296755	108	2.1	106	88	4	324	56	10	9	24	1.62
43296761--43296805	18	2.4	18	85	7	54	71	2	2	24	1.09
43297018--43297073	3	17.7	3	78	10	58	57	0	5	37	1.22
43298708--43298826	44	2.7	43	78	8	116	30	22	16	30	1.96
43298797--43299613	124	6.6	124	98	0	1553	27	21	19	30	1.98
43299542--43300481	46	21.4	46	80	9	673	27	21	18	32	1.96
43298922--43299999	170	6.4	170	75	12	912	27	21	19	30	1.98
43299581--43299999	80	4.9	87	71	15	304	26	21	20	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43299210--43299951	294	2.5	288	77	11	917	27	21	19	30	1.98
43300296--43300446	44	3.7	39	76	12	117	29	22	18	29	1.97
43300365--43300489	44	2.8	46	80	4	139	29	20	16	33	1.94
43311810--43311921	55	2.0	55	100	0	224	25	26	30	17	1.97
43312013--43312163	76	2.0	76	98	0	293	25	23	28	23	1.99
43312362--43312479	59	2.0	59	94	0	209	29	20	24	25	1.99
43312253--43312587	168	2.0	168	87	4	489	31	18	20	28	1.96
43312421--43312969	108	5.1	108	96	1	976	32	16	20	31	1.94
43314625--43314686	31	2.0	31	100	0	124	32	9	16	41	1.80
43317067--43317109	11	3.8	11	81	3	50	39	0	0	60	0.97
43319489--43319864	124	3.0	124	94	1	637	33	21	14	30	1.93
43322676--43323185	256	2.0	255	94	0	894	30	9	17	41	1.82
43324387--43324450	13	5.0	13	80	1	67	35	18	3	42	1.66
43324389--43324473	26	3.3	26	76	0	80	32	18	2	45	1.62
43324388--43324473	13	6.7	12	76	9	55	32	18	2	46	1.62
43324636--43324697	25	2.5	25	72	0	61	30	24	14	30	1.95
43326030--43326061	13	2.4	14	89	10	57	59	0	0	40	0.97
43333184--43333231	25	1.9	25	86	0	69	35	16	14	33	1.89
43338496--43338538	21	2.0	22	86	4	61	46	4	9	39	1.57
43355143--43355372	43	5.3	43	82	3	257	30	24	19	25	1.98
43358580--43358626	19	2.5	19	92	0	85	38	8	10	42	1.70
43359997--43360055	29	2.0	29	96	0	109	28	15	25	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43360725--43360889	89	1.9	89	87	2	242	45	29	0	24	1.54
43361348--43361393	20	2.4	19	85	7	58	65	4	4	26	1.30
43361421--43361663	41	5.9	41	87	4	312	32	22	20	23	1.98
43362639--43362685	20	2.4	20	75	3	51	55	0	2	42	1.12
43364654--43364693	5	8.4	5	83	10	57	60	0	2	37	1.11
43364656--43364698	15	3.1	14	83	12	54	60	0	2	37	1.10
43364833--43364872	14	2.9	14	84	0	53	32	7	17	42	1.77
43364856--43364895	20	2.0	20	85	0	53	25	10	15	50	1.74
43364841--43364907	34	1.9	35	87	3	100	29	8	14	46	1.76
43364994--43365032	20	2.0	20	94	0	69	48	2	0	48	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205