genome.fa.s19.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  17  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5276920--5276966	22	2.1	22	84	7	60	36	31	6	25	1.81
5277282--5277350	35	2.0	35	94	0	120	21	10	49	18	1.77
5286951--5287038	25	3.6	25	76	1	88	26	20	17	36	1.94
5287216--5287267	24	2.2	24	85	0	68	21	26	23	28	1.99
5287104--5287269	27	6.6	25	72	8	88	23	25	18	33	1.97
5297569--5297809	50	4.7	50	85	5	286	23	29	21	26	1.99
5298003--5298033	15	2.1	15	100	0	62	22	38	12	25	1.90
5298170--5298227	30	1.9	30	86	6	82	31	24	5	39	1.77
5305175--5305428	51	4.7	55	81	10	321	24	27	22	26	2.00
5305175--5305427	107	2.4	107	99	0	497	24	26	22	26	2.00
5305531--5305555	13	1.9	13	100	0	50	56	8	4	32	1.47
5305769--5305826	30	1.9	30	83	13	75	29	24	6	39	1.81
5306803--5306908	52	2.0	52	92	0	176	43	2	16	37	1.62
5310370--5310407	13	2.7	14	88	8	51	15	23	5	55	1.61
5315850--5315886	17	2.2	17	95	0	65	48	5	8	37	1.56
5316375--5316423	23	2.1	23	100	0	98	44	8	18	28	1.78
5319372--5319477	41	2.6	41	90	3	169	20	29	19	30	1.97
5321168--5321226	28	2.0	31	83	9	79	50	5	0	44	1.24
5324698--5324919	114	1.9	114	93	0	381	40	13	3	42	1.59
5325878--5325902	13	1.9	13	100	0	50	68	24	0	8	1.16
5341906--5342188	141	2.0	141	98	0	548	28	11	24	35	1.90
5345606--5346667	40	26.6	40	97	0	1916	24	20	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5349122--5349326	104	2.0	102	91	1	329	25	20	20	33	1.97
5351573--5351718	73	2.0	73	94	0	256	34	17	12	35	1.87
5363987--5364038	24	2.2	24	89	0	77	55	9	1	32	1.43
5364800--5364860	31	2.0	31	83	6	79	42	18	13	26	1.86
5364683--5365289	184	3.3	183	89	1	919	42	18	9	29	1.82
5365129--5365229	31	3.3	29	76	13	89	42	20	9	26	1.83
5367161--5367742	291	2.0	291	99	0	1155	37	18	16	28	1.92
5376571--5376667	27	3.7	27	84	4	126	42	21	16	19	1.89
5382087--5382513	212	2.0	212	99	0	845	33	17	11	36	1.86
5382803--5383011	106	2.0	106	94	0	364	33	16	22	28	1.95
5394544--5394579	14	2.6	14	100	0	72	11	36	13	38	1.81
5394705--5394760	27	2.1	27	96	0	103	50	3	19	26	1.64
5397603--5397675	24	3.0	24	75	9	67	31	20	30	17	1.96
5402137--5403363	641	1.9	638	82	4	1511	34	17	8	39	1.81
5417394--5417443	17	3.0	17	88	2	66	30	22	4	44	1.71
5417400--5417447	17	2.8	17	90	0	69	29	25	2	43	1.66
5420769--5420818	17	2.9	17	85	8	75	26	26	6	42	1.78
5421730--5421789	29	2.1	29	90	0	93	26	33	23	16	1.96
5429491--5429574	25	3.4	24	79	14	91	36	20	22	20	1.95
5429470--5429549	24	3.3	25	76	11	85	33	20	26	20	1.96
5429487--5429556	24	2.9	25	79	14	92	38	18	22	20	1.93
5429469--5429599	50	2.7	47	81	8	145	35	19	26	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5434610--5434635	13	2.0	13	100	0	52	7	0	30	61	1.24
5436519--5436563	20	2.2	21	84	4	56	28	24	8	37	1.86
5438936--5438961	1	26.0	1	100	0	52	0	0	0	100	0.00
5443245--5443303	31	1.9	31	89	0	91	44	5	10	40	1.60
5443245--5443310	31	2.2	31	86	2	89	42	6	10	40	1.64
5445371--5445408	18	2.1	18	95	0	67	23	13	2	60	1.45
5446129--5446176	10	5.2	9	83	11	53	29	0	2	68	1.01
5446129--5446178	9	5.3	9	81	9	55	30	0	2	68	1.01
5446130--5446182	19	2.8	18	83	8	61	32	0	1	66	1.03
5446135--5446182	9	5.1	9	82	7	60	29	0	2	68	1.01
5447577--5447619	21	2.0	21	90	0	68	41	0	18	39	1.51
5448069--5448127	25	2.4	25	97	0	109	16	30	18	33	1.94
5448281--5448336	25	2.2	26	81	9	71	21	23	21	33	1.97
5449909--5449945	12	3.0	13	76	15	51	43	0	0	56	0.99
5450663--5450712	20	2.5	20	87	6	66	28	16	16	40	1.89
5455297--5455324	7	4.0	7	100	0	56	28	0	0	71	0.86
5459907--5459963	30	1.9	30	88	0	87	45	0	35	19	1.50
5460483--5460567	30	2.9	29	72	10	82	57	8	2	31	1.41
5465051--5465085	17	2.2	17	90	10	56	14	31	34	20	1.92
5469051--5469151	42	2.4	43	81	1	114	28	16	21	32	1.96
5469008--5469164	43	3.7	42	73	9	113	28	16	24	31	1.96
5480640--5480739	37	2.7	36	81	6	103	38	30	15	17	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5482068--5482333	103	2.6	104	90	3	419	19	20	29	29	1.97
5489560--5489825	103	2.6	104	92	0	435	19	20	29	29	1.97
5496440--5496531	40	2.2	42	84	3	116	34	1	9	54	1.41
5502670--5502841	62	2.7	62	80	8	163	43	12	2	40	1.58
5506673--5506749	33	2.5	30	80	6	82	27	15	9	48	1.75
5511540--5511564	12	2.1	12	100	0	50	20	16	0	64	1.30
5514551--5514607	27	2.1	28	83	9	73	45	3	0	50	1.18
5517281--5517576	162	1.8	162	88	1	459	27	20	31	21	1.98
5517412--5518402	201	5.0	201	90	4	1393	30	19	30	19	1.96
5517906--5518282	189	2.0	189	91	1	603	32	19	30	17	1.95
5517437--5518402	390	2.4	395	88	3	1363	31	19	30	19	1.96
5538948--5539074	42	3.0	42	81	4	130	43	20	22	14	1.87
5538947--5539070	21	5.9	21	75	3	106	42	20	22	13	1.87
5538969--5539106	63	2.2	63	81	5	163	44	18	21	15	1.87
5542276--5542301	5	5.2	5	100	0	52	42	38	0	19	1.51
5547944--5548053	41	2.6	42	78	11	127	36	25	20	18	1.94
5548082--5548373	51	5.8	51	74	10	276	31	27	16	24	1.97
5548184--5548360	50	3.5	50	76	13	200	31	25	16	25	1.96
5548080--5548365	101	2.8	100	90	2	439	31	26	17	24	1.97
5556083--5556121	14	2.8	14	84	0	51	15	5	43	35	1.69
5556384--5556455	31	2.4	31	79	13	78	45	20	11	22	1.82
5557227--5557291	17	3.9	16	72	9	58	3	35	0	61	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5562284--5562321	5	7.6	5	93	0	67	42	0	0	57	0.98
5567338--5567398	29	2.1	29	81	6	70	62	1	1	34	1.15
5567551--5567591	21	1.9	22	90	5	66	41	0	4	53	1.22
5567540--5567589	11	4.5	11	80	9	50	44	0	6	50	1.26
5567649--5567688	19	2.1	19	90	0	62	57	15	2	25	1.50
5568730--5569106	124	3.0	124	89	2	551	30	14	21	33	1.93
5572232--5572299	17	3.8	17	71	16	57	48	1	5	44	1.36
5572114--5572360	115	2.1	116	94	0	433	45	6	7	40	1.59
5572354--5572948	23	26.1	22	75	12	442	26	0	24	48	1.54
5572415--5572464	22	2.3	22	85	0	64	22	0	30	48	1.51
5572354--5572948	114	5.2	113	80	9	629	26	0	24	48	1.54
5572363--5572951	91	6.5	90	84	9	702	26	0	24	48	1.54
5572499--5572921	137	3.1	131	77	12	385	24	0	26	48	1.54
5572994--5573041	25	1.9	25	100	0	96	39	14	0	45	1.45
5573474--5573509	18	2.0	18	94	0	63	38	8	27	25	1.84
5574160--5574184	7	3.6	7	100	0	50	60	12	0	28	1.32
5574355--5574392	20	1.9	20	84	10	51	55	7	2	34	1.43
5575009--5575037	11	2.6	11	100	0	58	44	6	27	20	1.77
5578764--5578833	27	2.6	27	90	0	113	30	21	30	18	1.97
5578841--5579338	19	24.3	19	66	25	168	30	0	13	56	1.40
5578967--5579248	80	3.5	83	83	11	233	30	0	12	57	1.35
5578844--5579314	101	4.6	100	85	6	574	30	0	13	56	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5579065--5579251	80	2.3	80	94	0	329	31	0	12	56	1.36
5579225--5579301	27	3.0	27	85	11	117	29	0	15	54	1.42
5579227--5579337	23	4.8	23	83	13	140	29	0	17	53	1.44
5579247--5579338	42	2.2	42	98	0	175	29	0	17	53	1.44
5579331--5579452	60	2.0	59	85	6	165	31	0	12	54	1.43
5579569--5579605	16	2.4	16	90	4	58	32	2	5	59	1.34
5581736--5581765	15	2.0	15	93	0	51	63	0	0	36	0.95
5581735--5581802	23	3.0	23	79	16	70	61	0	2	35	1.11
5582930--5582961	8	4.0	8	95	0	55	12	0	15	71	1.14
5584938--5584993	15	3.5	17	77	20	59	42	1	0	55	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205