genome.fa.s19.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  103  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30367100--30367189	44	2.0	44	86	0	126	37	10	3	48	1.53
30367543--30367584	17	2.5	17	88	7	59	52	0	4	42	1.22
30369795--30369843	20	2.4	20	82	3	62	36	14	14	34	1.86
30378941--30379359	219	1.9	217	93	2	716	33	21	10	33	1.88
30387244--30387390	21	6.9	21	66	3	78	41	16	15	26	1.88
30387245--30387502	43	6.0	43	78	0	264	42	15	15	26	1.87
30387245--30387486	87	2.8	87	84	0	279	42	15	15	26	1.87
30387245--30387502	130	2.0	129	82	0	309	42	15	15	26	1.87
30389997--30390306	40	7.8	40	97	1	568	29	20	27	22	1.99
30391177--30391230	28	1.9	28	88	0	81	46	11	11	31	1.74
30399341--30399386	21	2.2	21	92	0	74	30	13	19	36	1.90
30400962--30401140	50	3.4	52	79	7	168	26	20	29	24	1.99
30401406--30401444	20	2.0	20	90	10	62	56	5	23	15	1.59
30413536--30413571	7	5.3	7	96	3	65	27	27	0	44	1.55
30415217--30415251	7	5.0	7	92	0	61	11	60	0	28	1.32
30421207--30421300	46	2.0	46	93	4	163	24	18	22	35	1.96
30421374--30421399	13	2.0	13	100	0	52	69	7	7	15	1.35
30421438--30421477	14	2.7	14	88	7	53	62	5	10	22	1.46
30424652--30424707	28	2.0	28	100	0	112	17	14	42	25	1.87
30437933--30437986	25	2.1	26	86	10	76	31	3	1	62	1.23
30442896--30442956	19	3.3	19	69	17	65	27	8	13	50	1.69
30442905--30442963	19	3.2	19	70	18	61	30	8	11	49	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30455313--30455407	49	1.9	49	100	0	190	31	8	29	30	1.87
30458111--30458252	75	1.9	75	84	8	191	30	13	9	46	1.74
30466765--30466982	32	6.7	32	78	5	177	42	12	11	33	1.79
30474247--30474330	32	2.7	31	72	7	73	48	15	7	28	1.71
30474294--30474469	30	5.9	29	70	17	121	43	12	9	34	1.75
30474251--30474369	62	2.0	60	83	3	148	44	14	9	31	1.76
30474271--30474454	92	2.1	85	84	7	242	42	13	9	34	1.77
30474257--30474407	30	4.8	32	80	6	141	41	15	11	31	1.82
30474294--30474465	58	3.0	58	76	11	167	42	12	9	34	1.76
30474386--30474433	24	2.0	24	87	0	69	43	12	6	37	1.68
30474407--30474511	34	3.2	31	79	14	88	48	12	6	32	1.67
30481785--30482641	436	2.0	436	87	2	1238	35	22	13	28	1.92
30484713--30484836	27	4.6	27	89	2	176	27	13	28	30	1.94
30484713--30484836	55	2.3	54	90	1	185	27	13	28	30	1.94
30491990--30492016	13	2.1	13	100	0	54	40	14	14	29	1.86
30492563--30492740	27	6.6	27	83	3	205	26	15	28	29	1.96
30492564--30492719	82	1.9	81	88	3	233	26	15	28	29	1.96
30492560--30492740	82	2.2	81	83	2	229	27	15	27	29	1.96
30492645--30492751	27	3.9	27	85	1	70	26	14	28	30	1.95
30504175--30504215	20	2.0	20	85	0	55	26	17	17	39	1.91
30507375--30507422	25	2.0	24	83	4	60	18	25	18	37	1.94
30509039--30509128	25	3.6	25	77	3	92	30	21	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30513877--30513996	60	2.0	60	88	3	179	31	24	19	25	1.98
30518847--30519079	98	2.3	102	83	7	269	21	27	24	27	1.99
30518785--30519079	50	5.8	50	81	4	299	22	26	23	27	1.99
30520283--30522566	722	3.2	702	88	4	3187	25	20	17	36	1.94
30527681--30528388	140	5.1	140	94	0	1222	44	5	8	40	1.59
30528364--30528510	75	2.0	75	86	4	208	29	15	9	44	1.78
30529329--30529540	43	4.9	43	75	5	121	44	18	14	21	1.86
30529351--30529593	129	1.9	129	85	3	337	41	21	16	20	1.89
30529387--30529584	43	4.6	43	74	3	148	40	22	15	21	1.90
30532309--30532441	50	2.7	50	83	0	185	20	27	23	29	1.99
30535317--30535348	12	2.7	12	100	0	64	43	6	0	50	1.27
30540766--30540957	50	3.9	50	75	1	127	21	28	20	29	1.98
30542832--30542882	16	3.2	15	81	10	57	43	3	25	27	1.72
30544584--30544617	17	2.0	17	100	0	68	64	11	0	23	1.26
30557225--30557256	17	1.9	17	93	6	57	25	15	18	40	1.90
30557976--30558021	18	2.8	18	84	15	64	0	30	41	28	1.56
30559794--30559836	13	3.1	14	84	12	54	60	0	0	39	0.97
30563420--30563454	16	2.2	16	100	0	70	31	17	5	45	1.71
30568544--30568779	30	7.8	31	68	12	102	36	13	26	24	1.92
30568545--30568810	89	3.0	90	85	4	342	36	13	27	22	1.92
30568668--30568795	30	4.3	30	76	9	136	36	14	26	21	1.93
30571988--30572040	23	2.4	22	76	20	56	9	18	1	69	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30574366--30574425	22	2.7	23	73	19	63	66	6	0	26	1.16
30574375--30574408	4	8.0	4	90	9	50	73	2	0	23	0.97
30577817--30577870	25	2.2	24	83	12	65	50	16	3	29	1.63
30587825--30587903	41	1.9	41	100	0	158	36	16	20	26	1.93
30590307--30590404	20	4.9	20	66	5	63	13	26	20	39	1.89
30603138--30603193	28	2.0	28	100	0	112	17	17	28	35	1.93
30610502--30610974	40	11.8	40	99	0	919	30	20	27	22	1.98
30623859--30623947	33	2.7	33	89	0	133	19	14	13	52	1.74
30634809--30634844	18	1.9	19	88	5	56	55	0	11	33	1.35
30639421--30639597	50	3.5	50	81	0	183	20	28	22	28	1.98
30645311--30645456	50	2.9	50	79	0	157	23	28	21	26	1.99
30646978--30647056	37	2.1	37	90	0	122	25	31	18	24	1.98
30647175--30647518	47	7.3	47	96	0	589	29	30	7	31	1.86
30654646--30654724	37	2.1	37	90	0	122	25	31	18	24	1.98
30654843--30655207	49	7.6	49	94	2	625	29	29	8	32	1.86
30661574--30661765	50	3.8	50	85	0	267	20	30	22	27	1.98
30663514--30663682	27	6.3	27	86	4	198	43	20	15	20	1.88
30663514--30663682	81	2.1	81	84	4	225	43	20	15	20	1.88
30663849--30663923	26	2.9	26	87	0	114	14	20	29	36	1.92
30667324--30667609	50	5.7	50	82	3	310	20	28	23	26	1.99
30671053--30671085	16	2.0	17	94	5	59	30	33	0	36	1.58
30675972--30676070	25	4.0	25	77	7	94	33	20	22	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30678324--30678756	27	16.7	27	73	9	244	38	20	18	21	1.93
30678346--30678546	102	2.0	103	87	1	296	37	20	18	22	1.94
30678514--30678558	22	2.0	22	100	0	90	26	26	22	24	2.00
30678565--30678807	81	3.0	81	81	2	249	41	20	16	20	1.89
30678643--30678807	27	6.2	26	81	5	152	43	21	13	21	1.86
30678654--30678824	79	2.1	80	83	4	211	43	21	14	21	1.87
30679131--30679247	28	4.2	28	87	0	171	23	22	21	32	1.98
30686547--30686571	12	2.1	12	100	0	50	36	0	24	40	1.55
30692300--30692531	27	8.6	27	82	5	227	20	16	22	39	1.92
30692298--30692531	54	4.3	54	82	7	260	20	16	22	39	1.92
30692322--30692531	81	2.6	81	84	3	271	20	17	22	40	1.92
30693692--30693736	21	2.1	22	83	4	56	53	0	6	40	1.27
30697059--30697097	19	2.1	19	85	0	51	51	5	12	30	1.62
30698380--30698417	18	2.1	18	90	0	58	42	21	15	21	1.89
30698747--30698822	9	8.4	9	89	0	98	25	7	23	43	1.80
30698755--30698822	27	2.5	27	90	0	109	25	8	23	42	1.82
30698954--30698978	12	2.1	12	100	0	50	16	24	36	24	1.94
30704633--30704669	19	1.9	19	94	0	65	21	29	2	45	1.65
30704630--30704676	19	2.5	19	80	13	60	21	29	2	46	1.63
30708213--30708692	27	17.6	27	97	1	852	25	14	29	30	1.95
30708213--30708692	82	5.9	82	96	1	874	25	14	29	30	1.95
30719720--30719928	28	7.5	28	96	1	359	25	13	28	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30723145--30723204	25	2.4	25	100	0	120	21	15	21	41	1.89
30723839--30723876	20	1.9	20	89	10	60	55	5	21	18	1.62
30741587--30741668	39	2.1	39	97	0	155	35	13	24	26	1.92
30743764--30743870	33	3.3	34	65	22	95	35	14	21	28	1.93
30743759--30743886	63	2.0	63	100	0	256	37	15	20	26	1.92
30745164--30745190	5	5.4	5	100	0	54	40	18	18	22	1.91
30745556--30745598	17	2.4	18	80	7	52	72	6	4	16	1.24
30745786--30746775	494	2.0	494	99	0	1971	38	15	14	31	1.87
30758315--30758376	24	2.6	23	87	5	88	75	0	24	0	0.80
30758319--30758376	16	3.6	17	73	17	61	75	0	24	0	0.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205