Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  138  of  195  ( 23297 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23216463--23216495
11
2.8
12
86
9
50
66
0
0
33
0.92
23216839--23216868
2
15.0
2
100
0
60
50
50
0
0
1.00
23224083--23224218
44
3.1
44
81
3
168
37
14
16
31
1.89
23224072--23224198
22
5.8
22
69
14
82
34
13
19
32
1.91
23224011--23224218
88
2.4
87
81
10
212
37
15
15
30
1.90
23224257--23224304
22
2.2
22
84
0
60
35
20
14
29
1.93
23229129--23229183
22
2.5
22
80
14
60
63
7
5
23
1.41
23231660--23231720
29
2.1
29
87
0
86
21
0
14
63
1.30
23236096--23236144
24
2.1
23
84
3
62
48
4
4
42
1.40
23236315--23236377
32
2.1
31
85
8
85
57
0
0
42
0.99
23236331--23236390
23
2.5
23
81
8
66
61
1
0
36
1.06
23236341--23236398
23
2.5
23
81
10
73
62
1
0
36
1.06
23236932--23236962
13
2.4
13
94
0
53
64
19
3
12
1.41
23238131--23238229
50
2.0
51
84
6
130
24
11
10
54
1.66
23238735--23238773
18
2.2
17
86
4
51
15
7
2
74
1.15
23250741--23250770
8
3.8
8
95
0
51
13
0
0
86
0.57
23250872--23250909
20
1.9
20
88
0
58
78
2
0
18
0.86
23251747--23251831
3
28.7
3
90
2
136
67
1
1
30
1.06
23252104--23252887
118
6.7
117
79
5
715
42
16
23
17
1.89
23252136--23252922
236
3.3
235
82
4
789
42
16
23
17
1.89
23264920--23265032
3
38.7
3
78
16
87
67
0
5
26
1.18
23267148--23267215
20
3.4
20
73
13
68
30
14
2
51
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23284605--23284652
20
2.5
19
79
3
51
62
2
33
2
1.18
23284598--23284652
19
2.9
19
79
12
60
61
1
34
1
1.17
23287307--23287345
7
5.7
7
90
6
62
12
2
0
84
0.72
23287307--23287345
13
2.9
14
92
3
62
12
2
0
84
0.72
23287307--23287344
20
1.9
20
94
0
67
13
2
0
84
0.73
23288597--23288639
18
2.3
19
88
4
61
81
4
2
11
0.93
23288577--23288642
29
2.2
30
84
10
73
80
4
3
12
0.98
23288949--23288996
17
2.9
16
75
9
51
58
2
2
37
1.22
23289452--23289490
3
13.0
3
89
10
62
64
0
0
35
0.94
23289985--23290019
12
2.9
12
86
0
52
17
11
25
45
1.81
23290323--23290348
9
2.9
9
100
0
52
76
0
0
23
0.78
23290579--23290631
23
2.3
23
87
12
74
22
3
0
73
0.99
23290581--23290631
11
4.4
12
80
14
54
21
3
0
74
0.98
23298276--23298320
17
2.7
17
79
3
56
60
2
0
37
1.09
23300848--23300883
16
2.2
16
90
0
54
80
5
0
13
0.88
23300978--23301024
16
2.8
17
80
6
51
59
2
2
36
1.21
23301021--23301059
18
2.2
18
100
0
78
48
15
0
35
1.45
23302055--23302108
7
6.9
8
77
14
51
85
1
11
1
0.76
23302176--23302219
21
2.1
21
83
8
54
18
6
2
72
1.17
23305700--23307640
160
12.0
161
77
8
1403
42
16
8
32
1.78
23306091--23306125
18
1.9
18
100
0
70
34
17
14
34
1.90
23306109--23307583
322
4.6
317
80
5
1314
42
16
8
32
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23306201--23307583
482
2.9
482
78
5
1251
42
16
8
32
1.78
23320808--23320858
14
3.6
14
70
19
52
35
5
1
56
1.35
23320976--23321036
23
2.8
22
76
16
65
34
0
3
62
1.12
23321296--23321320
3
8.3
3
100
0
50
36
0
0
64
0.94
23321384--23321429
23
2.0
23
100
0
92
65
4
13
17
1.42
23322221--23322255
17
2.0
18
88
5
54
54
0
8
37
1.31
23325334--23325376
20
2.2
20
91
8
70
67
2
0
30
1.03
23325364--23325411
22
2.2
22
85
7
62
66
8
6
18
1.39
23325407--23325453
24
2.0
24
84
8
62
65
2
2
29
1.15
23325799--23325859
25
2.3
28
83
8
74
32
6
1
59
1.33
23332315--23332391
34
2.3
34
84
4
102
29
9
16
44
1.79
23332565--23332666
42
2.5
42
88
4
145
28
14
13
43
1.84
23332915--23332939
13
1.9
13
100
0
50
24
0
0
76
0.80
23336222--23336411
44
4.3
44
80
4
188
44
8
8
37
1.66
23336226--23336386
22
7.3
22
79
2
135
45
8
7
38
1.62
23336220--23336411
66
2.9
65
73
9
147
45
8
8
37
1.66
23336251--23336465
22
9.8
22
75
3
128
45
8
8
37
1.66
23336830--23336997
22
7.8
22
72
14
100
50
5
7
36
1.56
23336773--23337004
65
3.5
65
75
12
174
48
6
9
36
1.61
23336829--23337004
65
2.7
63
79
10
178
50
5
8
35
1.57
23336830--23337038
43
4.8
44
78
6
142
48
4
10
36
1.59
23336979--23337050
21
3.4
21
68
21
60
43
1
16
38
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23337018--23337061
21
2.1
20
83
8
52
47
2
9
40
1.48
23337305--23337420
22
5.4
22
78
6
103
41
5
12
40
1.66
23337305--23337361
20
2.8
20
86
5
78
35
5
19
40
1.74
23341223--23341275
17
3.1
17
76
15
56
71
7
11
9
1.30
23341223--23341261
8
4.9
8
81
12
53
66
10
10
12
1.44
23353725--23353778
21
2.6
21
84
0
63
57
9
3
29
1.47
23353744--23353798
21
2.7
21
78
10
60
58
7
5
29
1.48
23353817--23353866
26
2.0
25
84
11
66
54
6
8
32
1.54
23353928--23353995
3
23.0
3
90
3
111
32
0
2
64
1.08
23355686--23355727
21
2.0
22
85
4
59
45
4
4
45
1.45
23355730--23355758
12
2.5
12
94
5
51
68
0
0
31
0.89
23355969--23356007
12
3.2
12
85
10
53
43
0
0
56
0.99
23359771--23360690
461
2.0
462
97
1
1752
32
24
17
25
1.97
23361631--23361663
16
2.1
16
94
0
57
42
15
0
42
1.46
23364353--23364433
28
2.9
28
81
3
101
35
19
6
38
1.77
23366308--23366340
17
1.9
17
100
0
66
45
18
0
36
1.49
23375255--23375301
21
2.2
22
92
3
78
53
0
0
46
1.00
23375296--23375338
8
5.1
8
86
13
52
55
0
0
44
0.99
23376577--23376603
5
5.4
5
100
0
54
81
0
0
18
0.69
23381985--23382041
6
9.5
6
80
0
60
64
15
1
17
1.37
23385675--23385728
25
2.2
25
89
0
81
35
9
14
40
1.78
23386104--23386138
17
2.1
17
94
0
61
20
17
28
34
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23386046--23386297
103
2.4
103
94
1
425
30
15
29
24
1.96
23386207--23386241
17
2.1
17
100
0
70
22
17
25
34
1.96
23386654--23386680
11
2.5
11
100
0
54
11
7
25
55
1.61
23388649--23388697
20
2.6
19
78
9
55
8
8
4
79
1.04
23387948--23388993
518
2.0
520
93
1
1769
38
17
9
35
1.82
23392176--23392438
145
1.8
145
81
4
334
34
11
13
40
1.81
23394090--23394217
7
19.1
7
71
16
58
46
30
1
21
1.60
23394057--23394255
33
6.0
33
70
14
106
46
32
2
19
1.62
23394091--23394200
47
2.4
47
79
10
127
49
30
1
19
1.59
23394177--23394307
13
10.3
13
69
12
76
46
34
0
19
1.50
23394182--23394273
19
4.8
19
82
1
112
45
34
0
19
1.51
23394177--23394253
7
11.7
7
76
13
65
48
35
0
16
1.47
23395859--23395902
21
2.1
21
100
0
88
38
9
4
47
1.56
23396660--23396718
12
4.9
12
79
6
57
55
1
1
40
1.20
23396641--23396718
24
3.4
23
72
18
74
53
2
1
42
1.22
23397375--23397417
19
2.3
18
88
4
59
55
0
0
44
0.99
23401940--23401968
2
14.5
2
100
0
58
48
0
51
0
1.00
23405363--23405551
18
11.2
17
70
20
98
55
3
1
40
1.23
23405430--23405554
38
3.2
38
75
12
105
56
1
1
40
1.19
23405363--23405553
71
2.7
74
80
14
201
54
3
1
40
1.23
23405434--23405554
31
4.3
28
71
21
76
55
1
1
41
1.19
23405586--23405681
19
5.5
18
70
17
53
44
1
2
52
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23405652--23405706
16
3.8
16
73
26
68
52
0
0
47
1.00
23405650--23405714
9
7.7
9
74
19
68
49
0
0
50
1.00
23405650--23405714
26
2.6
26
92
7
109
49
0
0
50
1.00
23406580--23406617
20
1.9
20
88
0
58
84
2
10
2
0.83
23406746--23406816
6
12.5
6
92
4
105
81
0
1
16
0.76
23406845--23406886
3
14.0
3
94
0
66
66
4
0
28
1.12
23406747--23406886
6
24.0
6
81
11
80
70
2
0
25
1.05
23407729--23407861
16
8.1
17
73
15
91
62
1
4
31
1.24
23407807--23407886
4
19.5
4
75
14
74
70
1
2
26
1.08
23407717--23407850
66
2.1
65
82
9
159
61
1
5
31
1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195