genome.fa.s112.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  22  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5089353--5089395	21	2.0	21	95	0	77	37	11	18	32	1.87
5096882--5096986	52	2.0	52	81	9	124	57	0	11	30	1.41
5097860--5097947	29	2.9	29	80	8	79	60	3	3	32	1.30
5106314--5106344	4	7.8	4	92	0	53	22	3	0	74	0.96
5110864--5110909	23	2.0	24	86	4	67	28	8	6	56	1.54
5111860--5111901	1	42.0	1	100	0	84	0	0	0	100	0.00
5113843--5114202	180	2.0	178	93	1	612	43	5	19	31	1.73
5118308--5118360	23	2.2	25	86	6	74	11	1	15	71	1.22
5118705--5118788	29	3.0	26	74	22	64	71	1	19	8	1.18
5119053--5119382	101	3.3	99	82	7	431	36	22	13	28	1.91
5119044--5119384	47	6.9	48	84	7	393	36	22	12	28	1.91
5123127--5123162	18	2.0	18	100	0	72	27	27	5	38	1.79
5123129--5123169	18	2.3	18	91	0	64	24	26	9	39	1.86
5132541--5132603	14	4.5	14	75	18	60	74	0	20	4	0.99
5132639--5132700	3	20.7	3	100	0	124	67	0	0	32	0.91
5136473--5136572	52	1.9	52	87	4	148	47	7	19	27	1.75
5140998--5141046	23	2.1	23	96	0	89	32	22	22	22	1.98
5141132--5141171	2	20.0	2	100	0	80	0	50	0	50	1.00
5150063--5150143	42	2.0	42	92	2	137	49	12	17	20	1.79
5157384--5157418	17	2.1	16	89	5	52	62	11	2	22	1.41
5159433--5159480	25	2.0	23	88	8	69	64	2	0	33	1.05
5160025--5160053	15	1.9	15	100	0	58	75	0	3	20	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5160026--5160098	8	8.9	8	71	16	60	71	5	1	21	1.14
5160061--5160098	17	2.2	17	90	0	58	73	0	0	26	0.83
5160287--5160321	19	1.9	18	88	11	54	80	8	2	8	1.01
5160406--5160470	29	2.3	28	80	12	71	72	3	0	24	0.99
5160741--5160788	6	7.8	6	88	4	51	39	0	4	56	1.19
5160768--5160809	21	2.0	20	90	4	66	23	0	9	66	1.21
5160740--5160815	25	2.9	26	81	9	75	32	0	5	61	1.18
5163540--5163578	17	2.4	16	82	4	51	33	10	17	38	1.84
5163569--5163619	16	3.2	16	86	2	59	35	11	13	39	1.82
5163605--5163683	32	2.4	33	81	10	90	35	11	17	35	1.86
5163812--5163900	31	2.8	32	79	6	92	32	13	13	40	1.83
5164379--5164420	14	3.0	14	80	13	59	33	14	9	42	1.78
5164406--5164574	21	8.0	21	78	13	170	42	16	4	36	1.69
5164406--5164557	66	2.3	66	88	0	214	42	16	5	36	1.71
5164406--5164574	45	4.0	42	79	12	170	42	16	4	36	1.69
5170170--5170216	22	2.1	23	84	11	62	72	8	2	17	1.19
5171890--5171923	2	17.0	2	87	0	50	47	2	2	47	1.32
5172019--5172086	22	3.1	22	85	6	86	33	5	8	51	1.57
5172049--5172109	30	2.0	30	96	0	113	34	3	6	55	1.42
5173310--5173349	18	2.2	18	86	8	55	35	0	0	65	0.93
5173367--5173396	10	3.0	10	90	0	51	46	0	0	53	1.00
5173394--5173431	11	3.8	10	86	10	51	76	2	0	21	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5175425--5175454	2	15.0	2	92	0	51	50	3	0	46	1.18
5175421--5175453	10	3.3	10	95	0	57	51	6	0	42	1.26
5175448--5175561	53	2.2	51	89	6	174	33	12	13	41	1.81
5189943--5189981	21	1.9	20	89	5	60	64	10	7	17	1.48
5191674--5191722	22	2.3	22	85	3	64	44	6	6	42	1.54
5193290--5193344	20	2.8	20	81	10	69	69	1	9	20	1.25
5194703--5194741	19	2.1	19	100	0	78	15	20	10	53	1.70
5197306--5197358	16	3.1	18	82	17	60	39	3	1	54	1.29
5197489--5197538	13	3.8	13	80	12	50	18	4	6	72	1.22
5199194--5199298	51	2.1	49	82	7	122	53	7	4	34	1.51
5199405--5199632	60	3.6	60	73	15	215	47	5	11	35	1.62
5199491--5199523	15	2.3	15	94	5	59	63	6	0	30	1.18
5199302--5199755	131	3.4	132	83	8	511	48	6	10	34	1.63
5199638--5199751	60	1.9	60	89	5	178	52	7	10	29	1.62
5199558--5199705	73	2.0	75	85	5	203	50	4	9	35	1.56
5199302--5199755	133	3.4	131	79	10	487	48	6	10	34	1.63
5203690--5203766	10	7.5	11	72	18	69	77	0	15	6	0.95
5203690--5203756	32	2.1	32	88	5	100	77	0	16	5	0.95
5203690--5203777	33	2.8	30	80	16	97	78	0	15	5	0.93
5203690--5203767	11	7.5	11	70	17	51	78	0	15	6	0.95
5203690--5203777	14	5.9	14	66	21	54	78	0	15	5	0.93
5203690--5203744	11	5.1	11	78	12	53	78	0	16	5	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5204930--5205111	25	7.6	25	80	10	193	40	7	12	40	1.70
5204888--5205011	21	5.6	21	73	12	86	41	7	12	38	1.71
5204909--5205111	70	2.9	71	87	0	273	39	7	12	39	1.72
5204885--5205068	95	2.0	91	87	4	260	40	7	12	39	1.72
5204909--5205162	46	5.4	46	77	10	201	39	7	13	38	1.74
5204909--5205157	71	3.6	69	77	10	229	39	8	13	38	1.74
5205188--5205260	21	3.5	21	83	5	94	36	8	16	38	1.79
5205403--5205666	113	2.3	114	90	1	406	35	14	17	33	1.89
5205564--5205647	44	2.0	44	85	4	118	32	13	17	36	1.88
5206053--5206187	42	3.3	42	82	2	139	23	11	17	48	1.79
5206078--5206313	42	5.7	41	80	6	197	25	13	15	45	1.82
5206125--5206312	41	4.5	42	84	5	202	25	13	14	45	1.82
5206053--5206313	83	3.1	83	81	6	278	25	13	15	45	1.82
5206555--5206595	13	3.4	13	83	12	52	26	7	0	65	1.18
5208290--5208323	17	2.1	15	89	10	50	58	5	0	35	1.22
5208411--5208443	15	2.3	15	89	5	50	63	9	0	27	1.24
5208477--5208514	14	2.5	15	91	8	60	60	2	0	36	1.11
5208477--5208514	15	2.6	15	91	4	60	60	2	0	36	1.11
5208377--5208580	71	2.9	70	88	5	295	47	5	11	35	1.64
5208626--5208800	60	3.0	59	83	8	198	51	8	9	30	1.64
5208460--5208754	134	2.2	131	84	7	357	50	5	8	34	1.56
5209329--5209376	23	2.0	23	84	4	60	50	2	0	47	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5210813--5210858	21	2.3	21	85	7	60	6	6	4	82	0.94
5215657--5215706	24	2.1	24	88	7	75	20	18	8	54	1.68
5229859--5229890	2	16.0	2	100	0	64	50	0	0	50	1.00
5238432--5238489	27	2.1	27	80	0	62	27	18	10	43	1.83
5238756--5238828	34	2.1	34	87	0	101	31	9	16	42	1.80
5238819--5238964	75	1.9	75	80	2	168	31	17	18	32	1.95
5239214--5239254	21	1.9	21	90	5	64	78	2	2	17	0.98
5243569--5243605	1	37.0	1	100	0	74	100	0	0	0	0.00
5243928--5243959	16	1.9	17	93	6	57	43	3	12	40	1.58
5244911--5244947	19	1.9	19	100	0	74	48	21	5	24	1.71
5245240--5245293	21	2.6	21	84	0	81	38	11	3	46	1.57
5248095--5248181	43	2.0	43	100	0	174	40	9	11	39	1.73
5252912--5252951	21	2.0	20	85	14	55	50	2	5	42	1.37
5253175--5253217	13	3.1	14	84	15	54	51	2	0	46	1.13
5254749--5254791	11	4.0	11	78	6	52	37	2	0	60	1.10
5254758--5254808	9	5.4	9	78	17	59	41	0	0	58	0.98
5257433--5257461	2	14.5	2	100	0	58	48	0	0	51	1.00
5259026--5259055	10	3.1	10	95	4	53	93	0	6	0	0.35
5259027--5259056	15	2.0	15	93	0	51	90	0	10	0	0.47
5261924--5261974	26	1.9	27	84	4	68	60	0	3	35	1.15
5268108--5268142	17	2.0	18	88	5	54	60	0	2	37	1.12
5273228--5273266	16	2.8	13	79	20	51	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5273230--5273271	15	2.8	15	89	7	59	64	0	0	35	0.94
5273228--5273267	14	2.8	14	82	17	55	65	0	0	35	0.93
5277171--5277239	23	3.0	23	84	0	75	49	1	4	44	1.31
5277213--5277299	29	3.0	29	71	14	72	62	2	2	33	1.21
5281282--5281329	23	2.1	22	84	3	60	60	0	0	39	0.97
5281586--5281633	16	3.1	16	80	17	64	37	0	10	52	1.36
5282947--5283012	26	2.6	25	77	15	80	48	1	3	46	1.26
5282995--5283053	18	3.2	18	76	11	57	50	0	1	47	1.11
5283476--5283522	20	2.4	21	79	13	64	48	0	0	51	1.00
5284199--5284242	23	2.0	23	90	4	72	47	9	6	36	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195