genome.fa.s112.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  24  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5542000--5542082	22	3.8	22	71	9	80	33	3	8	54	1.48
5542004--5542091	22	4.0	22	72	11	65	35	3	10	51	1.53
5542069--5542210	44	3.2	44	77	9	119	34	7	5	52	1.54
5542175--5542267	44	2.1	44	80	7	100	36	10	4	48	1.58
5542201--5542276	22	3.5	22	78	3	82	36	9	3	50	1.53
5542629--5542676	22	2.2	22	85	7	62	39	4	8	47	1.53
5542653--5542721	33	2.1	33	94	0	120	37	5	11	44	1.65
5542691--5542733	22	2.0	22	90	0	68	39	2	11	46	1.53
5542653--5542736	33	2.5	33	88	3	116	38	4	13	44	1.64
5543166--5543239	22	3.4	22	74	20	73	39	4	9	47	1.55
5543247--5543495	11	22.9	11	69	14	97	38	8	2	51	1.46
5543193--5543311	53	2.3	51	82	10	134	40	7	5	47	1.54
5543177--5543325	75	2.0	74	80	6	167	40	6	5	47	1.53
5543311--5543353	19	2.3	19	83	0	59	39	6	4	48	1.51
5543359--5543393	13	2.8	13	87	12	56	40	0	0	60	0.97
5543247--5543578	22	15.3	22	71	12	132	38	9	2	49	1.49
5543337--5543571	109	2.2	109	80	7	246	38	8	2	50	1.46
5543623--5543671	22	2.2	22	85	7	64	42	8	2	46	1.45
5543637--5543719	22	3.8	22	80	0	85	36	4	4	54	1.43
5543753--5543821	22	3.1	22	73	8	68	39	4	1	55	1.29
5543779--5543916	66	2.1	66	83	2	179	39	7	3	49	1.50
5543853--5543895	11	3.9	11	84	0	59	39	2	0	58	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5543766--5543898	22	6.0	21	73	10	97	40	6	1	51	1.38
5546138--5546171	17	2.0	17	94	0	59	41	2	0	55	1.15
5547202--5547237	19	2.0	18	89	10	56	44	8	5	41	1.58
5558399--5558440	22	1.9	22	85	0	57	52	0	14	33	1.42
5568346--5568375	16	1.9	16	93	6	53	33	6	6	53	1.53
5568369--5568402	16	2.2	16	89	5	52	14	2	5	76	1.09
5570364--5570444	39	2.1	39	83	0	99	22	22	14	40	1.90
5572293--5572327	2	18.0	2	88	5	54	51	2	0	45	1.16
5572315--5572384	30	2.2	31	82	7	79	41	1	0	57	1.08
5572424--5572482	13	5.0	12	75	21	54	28	1	0	69	0.98
5572432--5572478	21	2.2	21	85	7	60	27	2	0	70	0.99
5572424--5572480	11	5.0	11	81	14	71	28	1	0	70	0.98
5576897--5577040	70	2.1	70	92	2	236	36	6	1	55	1.34
5576894--5577075	70	2.6	68	83	10	224	36	4	1	57	1.27
5577229--5577316	38	2.3	39	96	2	160	31	21	4	42	1.73
5580020--5580044	2	12.5	2	100	0	50	48	0	0	52	1.00
5582807--5582890	44	1.9	44	85	4	116	39	20	15	25	1.91
5584659--5584683	13	1.9	13	100	0	50	44	8	8	40	1.63
5585788--5585893	51	2.1	51	89	3	160	46	17	9	26	1.79
5593057--5593098	17	2.3	18	84	8	50	52	14	2	30	1.54
5594300--5594344	22	2.0	22	86	0	63	42	11	8	37	1.72
5601497--5601538	2	21.5	2	95	4	77	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5601563--5601604	22	2.0	21	85	4	57	16	4	2	76	1.07
5601625--5601690	31	2.1	31	83	10	82	15	6	6	72	1.24
5603418--5603451	15	2.2	16	89	5	52	61	0	0	38	0.96
5608472--5608565	47	2.0	47	95	4	172	40	9	31	18	1.82
5617854--5617933	23	3.3	24	75	18	69	46	0	1	52	1.08
5618074--5618103	6	5.0	6	100	0	60	83	0	0	16	0.65
5627055--5627176	60	2.1	57	83	6	147	38	16	9	35	1.82
5628068--5628145	29	2.6	31	76	17	92	39	1	2	56	1.21
5628133--5628188	17	3.1	18	77	12	53	50	0	1	48	1.11
5628165--5628296	30	4.4	29	75	15	119	53	2	4	40	1.34
5628167--5628296	60	2.2	61	82	9	153	53	2	4	40	1.34
5628424--5628448	11	2.3	11	100	0	50	72	0	0	28	0.86
5628424--5628456	13	2.8	12	90	9	50	69	0	0	30	0.88
5647032--5647066	17	2.1	17	88	0	52	48	25	11	14	1.77
5651736--5651817	35	2.4	34	82	8	96	62	2	2	32	1.22
5659161--5659228	11	6.8	11	74	14	51	48	1	1	48	1.19
5659156--5659209	27	1.9	29	88	7	85	53	1	0	44	1.11
5660073--5660111	11	3.5	11	82	3	51	58	0	0	41	0.98
5662330--5662392	21	3.0	20	79	20	60	80	1	9	7	0.95
5662332--5662389	23	2.7	22	82	15	59	79	1	10	8	1.01
5662647--5662676	15	1.9	16	93	6	53	66	0	0	33	0.92
5662742--5662771	7	4.4	7	91	8	53	90	0	10	0	0.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5662742--5662771	13	2.3	13	94	0	51	90	0	10	0	0.47
5663657--5663727	35	2.0	35	100	0	142	42	11	8	38	1.71
5666783--5666918	29	4.6	30	76	14	122	19	1	30	48	1.58
5667138--5667189	3	17.3	3	100	0	104	32	0	0	67	0.91
5667150--5667216	15	4.5	15	86	3	57	25	2	2	68	1.18
5674304--5674369	12	5.2	12	77	10	62	63	0	1	34	1.04
5674362--5674398	12	3.2	12	85	11	51	56	0	0	43	0.99
5674538--5674577	20	2.0	20	95	0	71	27	2	0	70	1.01
5675269--5675314	21	2.1	22	88	4	67	41	0	15	43	1.46
5676632--5676685	24	2.2	26	86	6	76	27	9	11	51	1.67
5678561--5678805	107	2.4	105	82	6	284	53	14	6	25	1.66
5678770--5678837	32	2.1	32	88	0	100	54	14	4	26	1.59
5678907--5679178	100	2.7	102	80	6	275	48	16	8	27	1.74
5681309--5681348	20	2.0	21	85	9	57	50	10	2	37	1.50
5682832--5682901	18	3.7	18	81	10	77	61	1	1	35	1.14
5682843--5682883	21	2.0	21	95	0	73	60	0	0	39	0.96
5694302--5694337	15	2.4	15	95	0	63	66	22	5	5	1.34
5701494--5701565	30	2.4	31	86	6	94	31	4	29	34	1.77
5702122--5702165	23	1.9	23	86	9	63	38	2	36	22	1.67
5703011--5703041	13	2.4	13	100	0	62	38	16	32	12	1.86
5707044--5707096	26	2.0	26	100	0	106	50	15	7	26	1.70
5709034--5709585	275	2.0	275	97	0	1034	34	12	24	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5718762--5718835	28	2.6	27	78	6	76	39	6	0	54	1.27
5718889--5718994	29	3.6	29	76	10	106	54	3	2	38	1.33
5718888--5718994	30	3.6	28	76	9	106	54	3	2	39	1.33
5720544--5720594	13	4.1	13	76	16	54	27	1	0	70	0.98
5725780--5725836	23	2.7	21	84	13	64	29	5	12	52	1.60
5727318--5727372	24	2.3	24	84	3	67	36	5	18	40	1.74
5727523--5727559	16	2.3	16	90	0	56	27	16	16	40	1.89
5727690--5727730	16	2.6	16	76	0	55	31	9	12	46	1.74
5728856--5728906	2	26.0	2	92	4	86	49	0	50	0	1.00
5732799--5732842	15	2.8	16	83	13	56	61	0	0	38	0.96
5734291--5734330	13	3.2	13	82	3	55	47	0	0	52	1.00
5734291--5734338	25	2.0	25	84	8	64	47	0	2	50	1.12
5740406--5740436	2	15.5	2	100	0	62	48	0	0	51	1.00
5741969--5742017	13	3.7	13	78	5	53	22	8	10	59	1.56
5741974--5742025	27	1.9	27	84	0	68	28	11	5	53	1.60
5743068--5743278	105	2.0	105	96	0	386	36	14	15	33	1.88
5746889--5746921	2	16.5	2	100	0	66	51	0	0	48	1.00
5747907--5747968	6	10.7	6	75	20	53	29	1	0	69	0.98
5747906--5747969	23	2.8	22	77	15	67	29	1	0	68	0.99
5747911--5747963	16	3.2	16	82	12	63	28	1	0	69	0.99
5747911--5747967	28	2.0	27	90	6	87	28	1	0	70	0.98
5747956--5748023	19	3.6	18	86	13	100	47	0	1	51	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5749226--5749263	14	2.7	15	84	15	55	23	5	5	65	1.34
5750669--5750760	39	2.4	39	87	5	125	17	1	58	22	1.45
5751046--5751085	19	2.1	19	85	4	53	22	0	7	70	1.12
5751282--5751330	25	1.9	26	91	4	82	46	2	10	40	1.49
5753342--5753420	39	2.0	39	100	0	158	35	12	7	44	1.71
5754782--5754812	6	5.2	6	92	0	53	19	0	48	32	1.49
5755157--5755281	18	6.9	18	73	13	105	32	35	4	28	1.78
5755161--5755203	21	2.0	21	90	0	68	25	41	2	30	1.68
5755181--5755282	33	3.0	34	81	5	134	34	32	4	28	1.79
5767902--5767950	21	2.3	22	79	10	57	46	0	2	51	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195