genome.fa.s112.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  121  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20886074--20886451	192	2.0	188	82	7	464	24	26	28	20	1.99
20887144--20887196	26	2.0	26	92	0	88	28	18	24	28	1.98
20888047--20888099	26	2.1	26	92	3	90	28	18	26	26	1.98
20886198--20890317	904	4.6	902	85	4	5264	25	23	24	26	2.00
20888938--20888990	26	2.0	26	100	0	106	26	20	26	26	1.99
20889365--20889419	26	2.1	26	83	6	67	27	5	12	54	1.60
20889800--20889851	26	2.0	26	92	0	86	28	17	25	28	1.97
20891657--20891706	26	1.9	26	95	0	91	30	16	28	26	1.96
20893940--20894018	26	3.0	26	94	0	131	27	16	25	30	1.97
20894866--20894918	26	2.0	26	96	0	97	26	18	26	28	1.98
20895770--20895822	26	2.0	26	92	0	88	26	15	24	33	1.95
20893210--20901127	904	8.8	901	85	4	9935	25	23	24	25	2.00
20898477--20898528	26	2.0	26	88	0	77	30	13	23	32	1.93
20900279--20900328	26	1.9	26	100	0	100	28	20	30	22	1.98
20902446--20902524	26	3.0	26	94	0	140	29	20	24	26	1.99
20903382--20903433	26	2.0	27	92	3	88	28	17	26	26	1.97
20904250--20904302	26	2.0	26	88	0	79	28	16	24	30	1.97
20908659--20908711	26	2.0	26	88	0	79	32	18	24	24	1.97
20910313--20910365	26	2.0	26	92	0	88	26	20	26	26	1.99
20910401--20911942	784	2.0	779	89	2	2346	25	23	24	25	2.00
20912859--20912911	26	2.0	26	100	0	106	26	20	26	26	1.99
20914667--20914719	26	2.0	26	96	0	97	26	22	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20911164--20915592	906	4.9	900	86	3	5835	25	24	24	25	2.00
20914831--20917010	718	3.1	715	89	3	3252	26	22	23	26	2.00
20917903--20917955	26	2.0	26	100	0	106	26	20	26	26	1.99
20916282--20920797	902	5.1	899	83	5	5461	25	24	24	25	2.00
20919662--20919715	26	2.1	26	89	0	81	31	20	24	24	1.98
20920588--20920944	160	2.2	159	84	1	437	21	27	29	21	1.98
20920853--20922502	844	2.0	842	87	2	2407	25	23	24	25	2.00
20921724--20923933	716	3.1	711	86	4	3006	26	23	24	26	2.00
20923140--20928285	875	5.9	875	87	2	7231	25	24	24	26	2.00
20928468--20928500	11	3.0	11	90	0	57	21	36	24	18	1.95
20928581--20928633	26	2.0	26	85	0	70	28	15	24	32	1.95
20928479--20939475	896	12.4	894	86	4	12806	25	24	24	25	2.00
20933904--20933956	26	2.0	26	100	0	106	26	20	26	26	1.99
20932143--20939475	904	8.2	899	86	4	8741	25	24	24	25	2.00
20939260--20939309	26	1.9	26	91	0	82	26	22	28	24	1.99
20940882--20940934	26	2.0	26	100	0	106	26	20	26	26	1.99
20939468--20945362	893	6.6	896	86	4	7523	25	23	24	25	2.00
20941785--20941837	26	2.0	26	100	0	106	26	16	26	30	1.97
20944446--20944497	26	2.0	26	84	0	68	30	17	25	26	1.97
20946009--20948057	684	2.9	693	88	4	2833	26	23	23	26	2.00
20948031--20948083	26	2.0	26	88	0	79	28	15	26	30	1.96
20949977--20950029	26	2.0	26	96	0	97	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20950880--20950929	26	1.9	26	95	0	91	28	20	24	28	1.99
20952671--20952723	26	2.0	26	96	0	97	26	18	26	28	1.98
20949615--20953792	902	4.6	898	89	1	6332	25	25	24	24	2.00
20953572--20953624	26	2.0	26	96	0	97	28	20	22	28	1.99
20957676--20957731	26	2.2	26	93	0	94	26	19	21	32	1.97
20956053--20959353	902	3.7	895	86	3	4310	25	24	24	26	2.00
20958573--20958625	26	2.0	26	100	0	106	26	20	26	26	1.99
20953790--20959353	894	6.3	882	86	4	6655	25	24	24	25	2.00
20959397--20959449	26	2.0	26	96	0	97	26	16	24	32	1.97
20958529--20960170	816	2.0	817	87	2	2357	25	23	24	26	2.00
20961192--20961244	26	2.0	26	92	0	88	30	20	22	26	1.98
20962084--20962136	26	2.0	26	96	0	97	28	20	24	26	1.99
20959353--20965973	902	7.4	900	85	3	8809	25	24	25	25	2.00
20962980--20963039	26	2.4	26	86	5	79	31	21	20	26	1.98
20964746--20964796	26	2.0	26	96	0	93	29	19	25	25	1.99
20966484--20966537	26	2.1	26	96	0	99	27	20	25	25	1.99
20967382--20967434	26	2.0	26	88	0	79	26	16	28	28	1.97
20968079--20968109	12	2.6	12	100	0	62	38	19	29	12	1.89
20969635--20969687	26	2.0	26	96	0	97	26	20	24	28	1.99
20971226--20971277	26	2.0	26	84	0	68	26	17	21	34	1.95
20971837--20971889	26	2.0	26	100	0	106	30	20	22	26	1.98
20971863--20972254	167	2.4	162	79	5	371	23	28	28	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20973711--20973763	26	2.0	26	92	0	88	30	20	22	26	1.98
20973091--20987221	903	15.8	898	85	4	17490	25	23	24	26	2.00
20978130--20978179	26	1.9	26	95	0	91	28	18	26	28	1.98
20979018--20979068	26	2.0	25	88	7	77	27	21	23	27	1.99
20979927--20979979	26	2.0	26	100	0	106	26	16	26	30	1.97
20980827--20980879	26	2.0	26	92	0	88	28	18	22	30	1.98
20977256--20987221	901	11.1	901	86	2	13030	25	23	25	25	2.00
20981734--20981787	26	2.1	26	85	0	72	25	18	24	31	1.97
20983536--20983587	26	2.0	26	88	0	77	28	19	23	28	1.98
20984437--20984488	26	2.0	26	88	0	77	28	19	23	28	1.98
20987840--20987892	26	2.0	26	92	0	88	28	18	24	28	1.98
20988730--20988782	26	2.0	26	92	0	88	28	20	26	24	1.99
20987202--20993243	895	6.7	893	88	3	8030	25	23	24	26	2.00
20989625--20989677	26	2.0	26	92	0	88	28	20	26	24	1.99
20990528--20990577	26	2.0	25	96	4	91	28	14	26	32	1.94
20991422--20991474	26	2.0	26	96	0	97	28	20	24	26	1.99
20992315--20992370	26	2.2	26	93	0	94	26	19	25	28	1.99
21000646--21000697	26	2.0	26	85	3	70	26	21	23	28	1.99
21001544--21001596	26	2.0	26	88	0	79	28	16	24	30	1.97
20998979--21006238	902	8.1	891	85	4	9019	25	24	24	25	2.00
21005141--21005193	26	2.0	26	88	0	79	26	18	24	30	1.98
21006027--21006079	26	2.0	26	96	0	97	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21006214--21006264	26	2.0	26	96	0	93	29	19	25	25	1.99
21006020--21006352	185	1.8	185	88	0	513	24	28	27	19	1.99
21007112--21007164	26	2.0	26	85	0	70	28	22	26	22	1.99
21007849--21007901	26	2.0	26	92	0	88	28	18	24	28	1.98
21006407--21007932	737	2.1	736	88	2	2263	26	23	23	26	2.00
21009484--21009536	26	2.0	26	92	0	88	28	18	24	28	1.98
21008083--21009608	734	2.1	733	87	2	2172	25	23	24	26	2.00
21010370--21010422	26	2.0	26	100	0	106	26	20	26	26	1.99
21011281--21011333	26	2.0	26	92	0	88	22	22	28	26	1.99
21008826--21012263	900	3.8	896	85	4	4500	25	24	24	25	2.00
21012181--21012233	26	2.0	26	100	0	106	26	20	26	26	1.99
21013636--21013688	26	2.0	26	92	0	88	26	24	26	22	2.00
21014382--21014434	26	2.0	26	96	0	97	28	15	26	30	1.96
21015285--21015333	25	1.9	26	91	4	82	28	22	26	22	1.99
21013995--21018886	895	5.5	899	84	6	5949	26	24	24	25	2.00
21016184--21016236	26	2.0	26	96	0	97	28	20	24	26	1.99
21017048--21017100	26	2.0	26	92	0	88	28	18	24	28	1.98
21020385--21020434	26	1.9	26	100	0	100	28	26	18	28	1.98
21021284--21021336	26	2.0	26	96	0	97	28	26	18	26	1.98
21022180--21022235	26	2.2	26	96	0	103	30	25	19	25	1.98
21023082--21023134	26	2.0	26	92	0	88	28	24	18	28	1.98
21023978--21024026	26	1.9	26	95	4	91	24	28	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21020318--21024854	899	5.0	900	86	4	5990	25	25	24	25	2.00
21026589--21026640	26	2.0	26	88	3	79	26	26	21	25	1.99
21024861--21029123	896	4.8	892	85	5	5476	26	24	24	25	2.00
21028365--21029830	707	2.1	708	89	2	2275	26	23	22	26	2.00
21029963--21030013	26	2.0	26	96	0	93	25	25	19	29	1.99
21030862--21030911	25	2.0	25	88	3	75	28	28	22	22	1.99
21029211--21031795	898	2.9	897	87	3	3623	26	25	23	25	2.00
21031634--21031982	184	1.9	182	82	2	443	22	28	27	21	1.99
21031943--21031995	26	2.0	26	96	0	97	26	24	20	28	1.99
21032835--21032887	26	2.0	26	96	0	97	28	26	18	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195