genome.fa.s112.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  61  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12312699--12312757	14	4.3	13	77	14	57	74	1	5	18	1.09
12314255--12314450	98	2.0	98	96	0	365	33	17	14	34	1.91
12322952--12323035	28	3.0	26	81	11	96	52	2	3	41	1.31
12322995--12323024	11	2.7	11	94	0	51	60	0	3	36	1.14
12323005--12323046	17	2.5	17	84	3	50	52	2	2	42	1.27
12323056--12323140	18	5.1	18	67	22	60	57	0	2	40	1.11
12323008--12323117	46	2.4	47	81	4	125	51	1	2	43	1.26
12323051--12323296	29	8.4	29	69	17	118	54	0	1	42	1.15
12323191--12323509	21	15.9	21	74	11	199	50	0	3	45	1.23
12323111--12323347	93	2.5	93	78	12	229	53	0	1	43	1.16
12323194--12323269	18	3.8	18	79	17	71	57	0	1	40	1.07
12323231--12323325	45	2.1	45	83	9	115	52	0	1	46	1.07
12323274--12323367	22	4.3	21	78	9	64	50	0	3	46	1.17
12323240--12323335	38	2.7	35	82	8	113	52	0	2	45	1.12
12323390--12323502	10	10.9	10	72	12	77	52	0	3	44	1.18
12323556--12323596	17	2.4	17	88	8	57	34	0	0	65	0.93
12323555--12323596	16	2.6	16	84	3	57	33	0	0	66	0.92
12324032--12324112	37	2.2	38	86	8	114	39	1	8	50	1.41
12324161--12324341	71	2.5	72	83	5	215	35	11	5	46	1.63
12324774--12324815	21	2.1	21	83	12	54	35	4	4	54	1.42
12324668--12324879	117	1.8	115	80	4	255	35	8	6	48	1.61
12341811--12341855	24	2.0	21	83	12	54	15	8	20	55	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12344690--12345161	134	3.5	134	83	2	579	27	13	20	38	1.90
12346590--12346851	140	1.9	140	81	6	325	43	17	7	31	1.76
12351931--12351974	20	2.3	20	84	7	56	18	22	4	54	1.61
12352577--12352687	3	39.7	3	76	16	105	32	1	3	62	1.23
12353405--12353504	14	7.3	14	69	11	64	19	2	3	76	1.02
12353404--12353481	18	4.0	18	73	16	57	20	0	3	75	0.95
12353391--12353493	41	2.6	40	74	18	106	19	2	2	74	1.07
12353471--12353521	26	2.0	26	84	7	68	25	5	1	66	1.24
12358321--12358353	17	1.9	17	93	0	57	54	12	9	24	1.66
12360842--12361145	55	5.5	55	71	5	141	22	24	14	39	1.91
12361489--12361704	3	74.3	3	73	9	144	30	2	6	60	1.34
12361527--12361616	5	17.0	5	77	17	60	33	2	4	60	1.29
12362475--12362563	7	12.3	7	72	18	58	20	0	4	75	0.98
12362481--12362562	30	2.7	30	79	7	94	20	0	4	74	1.00
12364264--12364307	19	2.2	20	88	4	63	56	9	0	34	1.31
12364465--12364499	17	2.0	18	88	5	54	22	0	0	77	0.78
12364699--12364751	19	2.8	19	73	18	56	22	9	26	41	1.84
12368787--12368833	21	2.2	21	77	7	51	42	8	2	46	1.46
12370933--12370984	21	2.5	20	84	3	59	63	13	0	23	1.29
12370949--12371002	21	2.6	21	79	5	56	62	14	1	20	1.40
12371587--12371627	12	3.3	12	80	6	55	85	0	12	2	0.70
12371560--12371640	31	2.6	31	84	5	101	77	1	17	3	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12371560--12371635	30	2.6	29	80	12	82	77	1	17	3	0.99
12377166--12377215	19	2.6	20	84	12	77	56	8	0	36	1.29
12377558--12377604	25	1.9	24	86	4	67	59	0	0	40	0.97
12392152--12392201	25	2.0	25	96	0	91	38	12	14	36	1.83
12397107--12397168	24	2.6	24	82	7	81	53	8	3	35	1.47
12397491--12397890	145	2.8	143	80	6	444	34	13	10	41	1.79
12401382--12401488	53	2.0	53	81	3	126	59	10	2	27	1.44
12401451--12401513	20	3.2	20	73	8	74	58	6	3	31	1.39
12401475--12401538	26	2.6	25	78	9	69	57	6	4	31	1.44
12401533--12401578	20	2.3	20	92	0	74	58	4	6	30	1.43
12401635--12401696	32	1.9	32	93	0	106	53	12	4	29	1.59
12401681--12401737	20	2.7	19	75	19	51	52	12	7	28	1.64
12402348--12402377	12	2.5	12	94	0	51	70	13	0	16	1.18
12402671--12402806	69	2.0	69	82	0	164	34	23	13	27	1.93
12402766--12403077	43	7.3	41	77	4	183	40	17	16	26	1.90
12402742--12403077	86	3.9	85	80	4	318	39	17	16	26	1.91
12402742--12403077	171	2.0	172	83	1	424	39	17	16	26	1.91
12406547--12406595	18	2.7	18	100	0	98	67	16	6	10	1.39
12407153--12407215	13	4.9	13	72	18	51	44	17	9	28	1.80
12407141--12407213	38	2.0	36	86	5	101	43	19	8	28	1.79
12407517--12407621	41	2.6	41	84	0	129	55	11	4	28	1.56
12407569--12407610	21	2.0	22	90	4	68	59	9	2	28	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12407766--12407825	22	2.8	22	83	14	81	55	8	5	31	1.51
12407766--12407821	23	2.7	19	73	23	51	55	8	5	30	1.53
12408460--12408489	12	2.5	12	94	0	51	70	13	0	16	1.18
12409587--12409730	51	2.8	52	84	6	188	36	6	15	41	1.72
12412080--12412111	16	1.9	17	93	6	57	9	15	0	75	1.05
12413729--12413753	11	2.3	11	100	0	50	92	0	8	0	0.40
12414066--12414095	14	2.1	14	100	0	60	80	13	6	0	0.91
12414819--12415027	55	3.8	54	75	11	167	19	21	16	43	1.88
12414987--12415044	30	2.0	29	93	3	98	15	18	18	46	1.84
12414819--12415027	109	1.9	109	86	2	294	19	21	16	43	1.88
12414949--12415109	84	1.9	83	84	1	214	18	20	16	45	1.86
12415019--12415159	54	2.6	54	81	6	169	21	21	14	41	1.89
12414990--12415116	29	4.5	29	69	12	93	20	22	14	41	1.89
12415168--12415484	55	5.8	55	73	7	182	23	22	12	41	1.87
12415084--12415376	110	2.7	111	78	7	310	21	21	14	41	1.89
12415067--12415485	164	2.6	163	77	4	387	22	21	13	41	1.88
12415426--12415530	55	1.9	55	82	3	131	23	18	13	44	1.85
12415773--12415835	17	3.7	17	100	0	126	23	28	6	41	1.79
12415759--12415832	34	2.2	34	90	0	112	29	25	8	36	1.85
12415759--12415843	34	2.5	34	84	1	109	29	27	7	36	1.83
12416326--12416468	51	2.8	51	79	3	153	37	9	15	37	1.79
12421650--12421694	24	1.9	24	86	4	65	44	11	8	35	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12426811--12426866	26	2.2	26	93	0	94	41	1	5	51	1.35
12426920--12426964	23	2.0	23	95	0	81	48	4	13	33	1.62
12432165--12432211	24	2.0	24	95	0	85	38	8	21	31	1.83
12436601--12436642	22	1.9	22	85	0	57	52	4	7	35	1.50
12437478--12437533	20	2.8	20	86	2	67	26	8	32	32	1.87
12439004--12439057	21	2.5	22	82	14	69	50	3	0	46	1.19
12438990--12439062	21	3.5	20	71	15	60	50	2	1	45	1.24
12439015--12439111	44	2.2	44	81	7	106	52	3	2	42	1.28
12439207--12439258	13	3.6	16	69	30	53	46	0	3	50	1.20
12439200--12439266	26	2.7	26	93	4	111	44	0	2	52	1.16
12440223--12440323	25	4.0	25	73	11	80	43	0	0	56	0.99
12440244--12440283	18	2.2	19	86	4	55	37	0	0	62	0.95
12442416--12442452	2	18.5	2	100	0	74	51	0	0	48	1.00
12442452--12442492	2	20.5	2	100	0	82	51	0	48	0	1.00
12445692--12445717	2	13.0	2	100	0	52	50	0	0	50	1.00
12448717--12448747	2	15.5	2	100	0	62	0	48	0	51	1.00
12451313--12451405	32	2.9	33	73	6	93	46	7	6	39	1.58
12451313--12451432	63	1.9	64	82	1	152	47	8	5	39	1.55
12451697--12451827	32	4.1	32	71	13	83	43	1	7	47	1.41
12457959--12458012	19	2.8	20	86	8	76	24	12	22	40	1.89
12458016--12458070	26	2.2	26	90	3	85	21	7	16	54	1.66
12458016--12458070	13	4.3	13	79	4	67	21	7	16	54	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12458023--12458076	13	4.2	13	75	11	58	20	7	16	55	1.65
12458354--12458393	3	13.3	3	94	0	71	32	2	0	65	1.06
12458568--12458599	3	10.7	3	100	0	64	68	0	0	31	0.90
12458598--12458795	107	1.9	107	90	3	319	48	12	7	31	1.68
12459630--12459677	21	2.2	23	81	7	55	4	12	8	75	1.18
12460820--12461050	95	2.4	93	75	13	220	30	11	18	39	1.86
12460820--12461110	33	9.0	33	72	12	178	31	12	17	38	1.87
12461162--12461245	33	2.5	33	82	5	98	29	7	19	44	1.77
12461245--12461311	30	2.2	30	84	7	82	28	10	22	38	1.87
12461295--12461386	33	2.8	33	83	0	103	30	10	16	42	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195