genome.fa.s112.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  77  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14997330--14997406	11	7.1	12	73	15	53	27	0	2	70	1.01
14997314--14997409	18	5.4	18	77	16	76	28	0	3	68	1.04
14997335--14997409	31	2.5	30	85	8	98	26	0	2	70	1.00
14997400--14997466	28	2.5	26	83	9	80	23	8	2	64	1.37
14998392--14998458	15	4.6	14	73	12	55	11	5	1	80	0.95
14998412--14998465	6	9.3	6	76	13	51	12	1	1	83	0.81
14998405--14998462	9	6.7	9	76	7	57	12	1	1	84	0.78
14998412--14998465	17	3.1	17	84	7	65	12	1	1	83	0.81
14998419--14998477	17	3.6	16	80	17	59	13	5	1	79	0.97
14998575--14998669	32	3.1	32	61	27	78	43	9	14	32	1.78
14998493--14999011	118	4.4	117	89	4	722	43	7	13	34	1.73
14998483--14999011	60	8.9	60	85	4	709	44	8	13	34	1.73
15000070--15000122	26	2.0	26	92	0	88	30	20	24	24	1.99
15003578--15003630	26	2.0	26	92	0	88	28	18	26	26	1.98
14999486--15009625	904	11.5	900	82	7	11462	25	23	24	26	2.00
15005327--15005379	26	2.0	26	85	0	70	30	18	22	28	1.98
15007070--15007122	26	2.0	26	92	0	88	30	20	22	26	1.98
15004459--15009625	900	5.9	887	82	7	6043	25	23	24	26	2.00
15010347--15014615	894	4.8	891	82	8	4783	25	23	24	26	2.00
15009630--15014615	874	5.6	883	82	8	5338	25	23	24	26	2.00
15013883--15013960	25	3.0	25	87	10	97	25	19	25	29	1.98
15016986--15017038	26	2.0	26	92	0	88	30	20	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15016132--15024837	901	9.9	883	81	9	9152	25	24	24	25	2.00
15018783--15018831	25	1.9	26	87	4	73	32	16	26	24	1.96
15020532--15020584	26	2.0	26	85	0	70	30	18	22	28	1.98
15022273--15022324	25	2.0	26	88	3	79	30	21	21	26	1.98
15024324--15025466	629	1.8	630	89	0	1788	26	21	22	29	1.99
15026449--15026497	25	2.0	25	91	0	80	30	20	22	26	1.98
15024839--15033883	901	10.2	897	83	6	10601	25	24	24	25	2.00
15028667--15028724	26	2.3	25	82	5	73	22	6	18	51	1.70
15029132--15029208	25	3.0	25	96	1	136	28	18	25	27	1.98
15030904--15030953	26	1.9	26	100	0	100	30	20	26	24	1.98
15033565--15033617	26	2.0	26	88	0	79	28	20	22	28	1.99
15033951--15034004	18	2.8	19	83	8	65	11	7	1	79	1.00
15033963--15034015	23	2.4	22	87	12	74	9	5	1	83	0.89
15034080--15034171	13	6.7	14	71	19	52	30	0	2	67	1.03
15034102--15034174	25	3.1	23	77	13	78	30	0	0	69	0.88
15034104--15034202	22	4.3	22	74	15	85	30	1	1	67	1.04
15034165--15034231	28	2.5	26	83	9	80	26	7	1	64	1.29
15035150--15035218	15	4.6	14	72	16	50	13	7	1	78	1.02
15035163--15035219	18	2.9	20	82	10	64	12	3	1	82	0.87
15035161--15035224	29	2.3	28	84	13	87	12	4	1	81	0.92
15035161--15035234	26	2.6	29	85	8	91	13	5	1	79	0.96
15035170--15035224	18	3.1	18	84	2	76	12	3	1	81	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15035261--15035598	60	5.7	60	90	3	517	44	7	13	34	1.73
15040074--15040166	41	2.3	40	89	9	136	22	16	22	38	1.92
15040151--15040179	12	2.3	13	94	5	51	34	6	27	31	1.83
15040110--15040220	53	2.1	54	96	1	206	25	15	25	34	1.95
15040163--15040382	42	5.3	42	89	4	329	23	18	23	35	1.96
15040164--15040382	83	2.6	83	89	2	323	23	18	23	34	1.96
15040699--15040806	11	9.8	12	68	17	56	27	1	2	67	1.15
15040683--15040788	18	5.8	18	75	16	78	29	0	2	66	1.12
15040704--15040778	31	2.5	30	85	8	98	26	0	2	70	1.00
15040769--15040835	28	2.5	26	85	9	89	25	8	1	64	1.31
15041759--15041825	15	4.6	14	73	12	55	11	5	1	80	0.95
15041772--15041833	10	6.7	9	75	25	58	12	1	1	83	0.79
15041772--15041840	24	3.1	22	84	12	79	13	2	1	82	0.85
15041786--15041845	17	3.6	16	77	20	52	13	5	1	80	0.96
15041779--15041833	6	9.3	6	76	9	51	12	1	1	83	0.80
15041943--15042037	32	3.1	32	61	27	78	43	9	14	32	1.78
15041851--15042380	60	8.9	60	85	4	709	44	8	13	34	1.73
15041867--15042380	119	4.4	119	90	3	729	43	7	13	34	1.73
15043441--15043493	26	2.0	26	92	0	88	30	20	24	24	1.99
15045211--15045263	26	2.0	26	92	0	88	30	20	22	26	1.98
15047003--15047055	26	2.0	26	92	0	88	28	18	26	26	1.98
15042855--15052948	905	11.3	903	85	4	12983	25	23	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15048750--15048802	26	2.0	26	88	0	79	28	18	26	26	1.98
15049641--15049691	26	2.0	26	96	0	93	27	13	27	31	1.94
15050544--15050595	26	2.0	25	88	3	77	28	19	25	26	1.98
15052337--15052389	26	2.0	26	92	7	90	28	18	26	26	1.98
15047884--15052948	902	5.6	898	86	3	6846	25	23	24	26	2.00
15054053--15054105	26	2.0	26	92	0	88	26	16	26	30	1.97
15054938--15054988	26	2.0	26	96	0	93	27	13	27	31	1.94
15052946--15057049	881	4.7	869	82	6	4590	24	23	25	25	2.00
15057527--15057893	159	2.3	157	86	2	500	22	28	29	19	1.98
15058565--15058636	26	2.6	28	91	8	112	29	15	23	31	1.95
15061992--15062044	26	2.0	26	92	0	88	28	18	26	26	1.98
15062866--15062918	25	2.0	25	89	7	79	28	18	24	28	1.98
15063751--15063805	26	2.1	27	89	3	85	30	20	21	27	1.98
15064640--15064692	26	2.0	26	92	0	88	28	16	26	28	1.97
15066405--15066457	26	2.0	26	92	0	88	26	16	28	28	1.97
15066513--15066565	26	2.0	26	92	0	88	28	18	24	28	1.98
15068431--15068483	26	2.0	26	89	7	81	28	15	22	33	1.94
15069336--15069385	26	1.9	26	100	0	100	28	20	28	24	1.99
15067536--15076306	901	9.8	896	84	4	10387	25	23	24	26	2.00
15070219--15070271	26	2.0	26	92	0	88	32	20	22	24	1.98
15071109--15071161	26	2.0	26	96	0	97	26	22	24	26	2.00
15072078--15072134	25	2.3	25	87	0	78	17	21	50	10	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15073794--15073846	26	2.0	26	96	0	97	28	16	24	30	1.97
15074694--15074746	26	2.0	26	88	0	79	28	20	22	28	1.99
15075597--15075646	26	1.9	26	91	0	82	30	20	24	26	1.98
15077625--15077677	26	2.0	26	100	0	106	26	20	26	26	1.99
15078522--15078574	26	2.0	26	92	0	88	28	18	26	26	1.98
15077287--15081989	905	5.2	901	83	7	5759	25	23	24	25	2.00
15082477--15082529	26	2.0	26	96	0	97	26	18	26	28	1.98
15083375--15083427	26	2.0	26	92	0	88	30	20	22	26	1.98
15082099--15091518	894	10.4	897	77	9	8382	25	23	24	25	2.00
15084265--15084317	26	2.0	26	92	0	88	28	16	26	28	1.97
15082099--15086955	903	5.4	883	84	5	5961	25	24	24	25	2.00
15086030--15086081	26	2.0	26	92	3	88	28	15	26	28	1.96
15087930--15087982	26	2.0	26	89	7	81	28	15	22	33	1.94
15087038--15091518	899	5.0	894	84	4	5607	25	23	24	26	2.00
15088832--15088881	26	1.9	26	100	0	100	28	20	28	24	1.99
15089709--15089760	26	2.0	25	88	3	77	30	21	23	25	1.99
15090599--15090651	26	2.0	26	96	0	97	26	22	24	26	2.00
15093284--15093336	26	2.0	26	92	0	88	24	24	20	30	1.99
15094398--15094918	60	8.8	59	85	3	683	34	14	8	43	1.75
15094741--15094835	32	3.1	32	61	27	78	32	14	9	43	1.78
15094398--15094918	118	4.4	119	89	3	721	34	14	8	43	1.75
15094939--15094983	15	3.1	14	81	9	54	80	0	2	17	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15094946--15095013	10	6.6	10	76	15	59	80	1	2	14	0.89
15094934--15095013	22	3.6	22	81	11	92	78	1	5	15	0.98
15094939--15095007	28	2.4	29	85	4	86	79	1	4	14	0.95
15095403--15095440	20	1.9	20	94	0	67	34	15	28	21	1.94
15095942--15096017	29	2.7	28	82	13	93	65	1	6	26	1.24
15096004--15096068	22	2.8	23	82	13	80	70	0	0	29	0.87
15095971--15096073	44	2.3	45	82	9	115	67	0	0	30	1.03
15096000--15096073	11	7.1	11	74	18	52	70	0	0	29	0.88
15095988--15096092	22	4.9	21	73	16	74	65	1	0	31	1.10
15095977--15096086	27	4.2	25	73	18	73	67	1	0	30	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195