genome.fa.s112.2.7.7.80.10.50.1000.181.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  181  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30775069--30775093	12	2.1	12	100	0	50	56	0	0	44	0.99
30778370--30778424	20	2.8	20	72	8	58	41	14	21	21	1.89
30779874--30779917	10	4.3	10	81	16	54	40	0	0	59	0.98
30779876--30779914	21	1.9	20	89	5	60	41	0	0	58	0.98
30779859--30779945	26	3.3	26	69	24	65	44	0	0	55	0.99
30780274--30780315	16	2.7	15	82	14	50	50	0	0	50	1.00
30780282--30780326	21	2.1	21	83	0	54	53	0	0	46	1.00
30780567--30780600	18	1.9	17	88	5	50	38	8	0	52	1.33
30781034--30781097	16	4.0	16	75	13	60	57	1	0	40	1.08
30781079--30781138	32	1.9	32	83	12	81	53	8	0	38	1.31
30781730--30781774	20	2.2	20	84	7	56	48	0	2	48	1.13
30785910--30785935	2	13.0	2	100	0	52	50	0	0	50	1.00
30789530--30789572	20	2.2	20	91	8	70	13	16	0	69	1.19
30798094--30798139	3	15.3	3	100	0	92	67	0	0	32	0.91
30799344--30799373	12	2.4	13	88	11	53	63	0	0	36	0.95
30799417--30799491	33	2.3	32	79	4	87	44	9	4	42	1.55
30815048--30815097	24	2.1	24	85	7	66	62	4	0	34	1.14
30815120--30815170	25	2.0	25	96	0	93	41	1	3	52	1.31
30815614--30815648	17	2.1	17	89	10	54	62	2	0	34	1.10
30816254--30816293	12	3.2	12	82	3	53	0	12	7	80	0.91
30817267--30817305	20	2.0	20	85	10	53	41	0	0	58	0.98
30818921--30819106	92	2.0	92	95	0	336	39	10	9	40	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30820919--30820944	12	2.2	12	100	0	52	42	19	0	38	1.51
30823755--30823804	24	2.1	24	81	7	57	32	0	2	66	1.03
30823772--30823811	21	1.9	21	89	0	62	37	0	0	62	0.95
30823764--30823810	24	2.0	24	82	0	58	36	0	0	63	0.94
30823946--30823985	12	3.5	11	86	10	53	77	2	2	17	0.99
30826350--30826393	22	2.0	22	86	0	61	34	13	11	40	1.81
30834688--30834731	22	2.0	22	95	0	79	31	11	13	43	1.80
30836758--30836785	2	14.0	2	100	0	56	50	0	0	50	1.00
30839035--30839076	22	1.9	22	95	0	75	21	26	21	30	1.98
30839106--30839182	38	2.0	38	94	0	136	38	15	22	23	1.92
30843857--30843892	2	18.0	2	88	0	54	47	2	2	47	1.31
30856291--30856337	24	2.1	23	84	11	62	27	0	12	59	1.34
30859099--30859155	29	1.9	30	85	3	80	49	5	0	45	1.24
30860248--30860279	3	10.7	3	93	0	55	31	3	0	65	1.08
30863202--30863232	16	2.0	15	93	6	53	29	0	0	70	0.87
30863415--30863494	19	4.4	19	70	9	58	30	1	2	66	1.13
30863621--30863657	20	1.9	20	88	5	58	10	2	5	81	0.96
30863811--30863849	16	2.4	17	82	4	53	10	5	7	76	1.13
30864008--30864042	6	5.8	6	96	0	61	68	0	11	20	1.20
30866942--30866986	19	2.4	19	80	0	54	37	2	4	55	1.32
30867113--30867152	10	4.1	10	90	3	55	17	0	5	77	0.94
30868076--30868124	20	2.5	20	80	12	64	12	2	16	69	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30868827--30868856	14	2.1	14	93	0	51	0	0	10	90	0.47
30875322--30875369	23	2.1	23	100	0	96	37	4	8	50	1.52
30878543--30878626	25	3.4	23	73	15	69	53	0	1	45	1.08
30878590--30878630	19	2.1	20	90	4	66	53	0	0	46	1.00
30878590--30878628	20	1.9	20	89	5	60	53	0	0	46	1.00
30894172--30894202	16	1.9	16	93	0	53	54	9	0	35	1.33
30895415--30895445	16	2.0	15	93	6	53	32	9	0	58	1.31
30903354--30903396	21	2.0	23	82	17	56	55	2	4	37	1.33
30904098--30904133	3	12.0	3	87	0	54	61	5	33	0	1.19
30911437--30911502	23	2.7	24	76	9	71	30	1	3	65	1.17
30913516--30913554	11	3.5	11	80	13	53	56	5	0	38	1.22
30913518--30913561	22	2.1	20	91	8	70	59	4	0	36	1.18
30916275--30916321	24	2.0	25	87	8	71	36	0	4	59	1.17
30916275--30916323	23	2.1	23	88	7	73	34	0	4	61	1.15
30917089--30917134	24	1.9	24	86	8	67	13	8	0	78	0.97
30919867--30919905	4	9.8	4	88	0	51	46	20	5	28	1.72
30919867--30919924	12	4.8	12	84	0	53	46	13	3	36	1.61
30919864--30919924	8	7.6	8	86	0	59	45	13	3	37	1.59
30919895--30919924	2	15.0	2	92	0	51	50	3	0	46	1.18
30924189--30924229	3	13.7	3	94	0	73	29	36	0	34	1.58
30925870--30925899	15	2.0	15	100	0	60	33	6	0	60	1.23
30930427--30930481	24	2.3	23	78	9	56	45	0	1	52	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30930519--30930552	14	2.4	14	90	0	50	32	5	0	61	1.20
30932100--30932275	62	2.9	61	77	8	178	31	15	10	42	1.81
30935793--30936034	62	4.0	60	84	7	283	36	9	4	48	1.58
30935790--30936019	123	1.9	125	86	3	331	35	10	5	48	1.61
30936025--30936065	21	1.9	22	85	5	57	26	0	0	73	0.84
30937046--30937092	17	2.7	18	74	9	53	78	4	0	17	0.90
30942151--30942196	2	23.0	2	100	0	92	50	0	50	0	1.00
30950171--30950199	2	14.5	2	100	0	58	48	0	0	51	1.00
30956376--30956400	12	2.1	12	100	0	50	60	0	0	40	0.97
30959194--30959288	47	2.0	47	100	0	190	29	14	18	36	1.91
30962719--30962818	22	4.4	22	73	18	80	40	1	6	53	1.32
30962725--30962801	11	6.7	11	69	24	52	38	1	5	54	1.31
30962719--30962810	47	2.0	44	87	6	130	36	1	6	55	1.33
30962785--30962881	22	4.5	22	74	10	83	41	2	5	51	1.36
30962796--30962882	42	2.1	42	88	0	129	40	2	5	51	1.38
30972112--30972146	16	2.1	17	89	5	54	34	31	5	28	1.81
30981534--30981564	15	2.1	15	100	0	62	19	12	6	61	1.53
30989950--30990061	45	2.5	46	76	9	117	49	0	0	50	1.06
30993556--30993588	6	5.5	6	100	0	66	36	0	63	0	0.95
30995445--30995469	13	1.9	13	100	0	50	40	4	24	32	1.73
30999418--30999452	18	1.9	18	88	0	52	45	2	0	51	1.16
30999979--31000050	37	1.9	37	83	5	92	50	5	1	43	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31000355--31000380	13	2.0	13	100	0	52	53	0	0	46	1.00
31006839--31006924	35	2.4	36	92	3	147	43	19	4	32	1.72
31014424--31014561	71	2.0	70	83	1	177	31	23	11	33	1.90
31033321--31033359	20	1.9	20	84	5	51	25	2	2	69	1.14
31034503--31034541	18	2.2	18	95	0	69	41	15	25	17	1.89
31040108--31040427	129	2.5	130	82	4	396	45	4	8	42	1.53
31040967--31041028	20	3.0	21	79	15	58	50	0	0	50	1.00
31046348--31046411	22	2.9	22	76	17	69	40	1	1	56	1.18
31047810--31047847	18	2.1	19	95	5	69	21	21	13	44	1.85
31049266--31049316	21	2.5	20	81	15	68	35	3	5	54	1.43
31049366--31049411	17	2.6	18	89	6	76	30	0	8	60	1.26
31049385--31049574	24	8.2	24	73	12	148	33	3	8	54	1.48
31049392--31049574	71	2.6	70	87	5	239	32	3	8	54	1.49
31049510--31049588	20	4.1	19	81	14	90	29	1	8	60	1.34
31049501--31049610	39	2.7	40	81	8	125	31	1	7	59	1.35
31051460--31051491	16	2.0	16	93	0	55	34	9	6	50	1.60
31054328--31054464	36	3.8	36	79	6	118	30	5	17	45	1.72
31054531--31054577	18	2.6	17	83	12	58	25	12	23	38	1.90
31054738--31054762	13	1.9	13	100	0	50	28	24	8	40	1.83
31054958--31055147	42	4.5	43	82	9	212	29	12	15	42	1.84
31055131--31055218	39	2.3	39	84	9	110	30	10	14	44	1.79
31055230--31055346	37	3.2	36	84	10	148	24	10	20	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31055230--31055395	37	4.5	36	78	12	135	25	10	19	43	1.83
31055269--31055420	36	4.1	38	76	11	102	23	10	19	46	1.80
31055230--31055460	73	3.1	75	76	13	187	25	10	19	43	1.83
31055378--31055464	37	2.4	37	77	9	97	27	11	17	43	1.83
31056389--31056432	17	2.5	17	85	3	61	18	0	4	77	0.94
31055525--31057543	680	3.0	678	92	2	3362	39	10	14	35	1.80
31057767--31057809	21	2.1	20	91	4	68	39	6	4	48	1.51
31057851--31058017	20	7.9	23	66	26	77	29	2	11	56	1.47
31057865--31057967	18	6.2	18	69	15	69	29	1	10	58	1.43
31057884--31057989	24	4.7	23	73	21	82	29	0	12	57	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195