genome.fa.s112.2.7.7.80.10.50.1000.191.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  191  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34445600--34445648	25	2.0	25	95	0	89	42	2	0	55	1.11
34446586--34446615	12	2.5	12	88	0	51	40	0	0	60	0.97
34448664--34448712	3	16.3	3	100	0	98	32	67	0	0	0.91
34450181--34450215	17	2.1	17	94	0	61	51	0	0	48	1.00
34450562--34450608	12	3.7	12	86	13	67	34	0	0	65	0.93
34454805--34454849	18	2.4	18	85	7	54	51	0	0	48	1.00
34456256--34456312	24	2.4	24	79	5	62	43	28	12	15	1.83
34456394--34456660	85	3.1	85	72	4	225	41	19	14	23	1.89
34456538--34457064	85	6.2	85	74	6	273	41	19	14	24	1.89
34457198--34457243	19	2.5	19	85	3	58	43	26	15	15	1.85
34457467--34457513	19	2.5	19	76	13	51	42	21	14	21	1.88
34457719--34457760	19	2.2	19	86	0	57	47	26	9	16	1.77
34457818--34457932	56	2.1	56	88	0	167	30	22	16	30	1.96
34457944--34458068	56	2.2	56	78	4	137	34	20	14	31	1.92
34458354--34458403	15	3.3	15	72	22	50	44	12	10	34	1.75
34459837--34460383	59	8.9	59	78	14	497	34	12	7	45	1.69
34461961--34462003	22	2.0	22	90	0	68	11	34	6	46	1.67
34462528--34462561	12	2.8	12	90	4	50	14	0	0	85	0.60
34462455--34462662	114	1.8	115	89	1	328	32	12	12	41	1.81
34462669--34462827	41	3.9	41	90	1	237	35	23	17	23	1.95
34462669--34462826	83	1.9	83	89	0	244	36	23	17	23	1.95
34462805--34462841	19	1.9	19	100	0	74	32	21	24	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34462766--34462886	60	2.0	59	93	1	206	38	23	17	21	1.93
34462826--34463598	41	18.8	41	90	3	1191	36	22	16	23	1.94
34462826--34463598	81	9.4	82	91	2	1180	36	22	16	23	1.94
34464833--34464890	20	2.8	19	87	12	80	3	12	0	84	0.74
34464830--34464897	27	2.5	27	79	9	75	4	11	0	83	0.78
34464833--34464890	11	5.6	10	82	13	73	3	12	0	84	0.74
34465203--34465236	5	7.2	5	87	12	54	17	0	0	82	0.67
34465203--34465236	13	2.5	13	90	9	50	17	0	0	82	0.67
34468786--34469406	58	10.5	58	85	7	815	36	13	7	42	1.71
34469046--34469078	16	2.0	17	88	5	50	54	3	0	42	1.15
34468786--34469422	177	3.6	179	91	3	1002	36	13	6	43	1.70
34468781--34469411	295	2.1	291	88	4	926	36	12	7	43	1.71
34469440--34469473	5	6.4	5	90	10	50	79	0	2	17	0.86
34471014--34471056	22	2.0	22	85	0	59	11	32	6	48	1.66
34487707--34487759	27	2.0	27	84	0	70	39	1	7	50	1.41
34487750--34487793	23	1.9	23	81	9	54	54	0	0	45	0.99
34487775--34487822	18	2.6	19	78	15	57	66	0	0	33	0.92
34487779--34487821	12	3.6	12	80	20	54	67	0	0	32	0.91
34492248--34492294	24	2.0	24	100	0	94	42	8	0	48	1.33
34507173--34507237	31	2.1	31	97	0	121	35	13	9	41	1.77
34532576--34532602	2	13.5	2	100	0	54	51	0	0	48	1.00
34537032--34537075	10	4.7	9	78	10	52	45	2	9	43	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34537034--34537075	19	2.2	19	91	0	66	45	2	9	42	1.49
34544954--34545015	31	2.0	31	96	0	115	33	22	6	37	1.80
34547381--34547412	4	8.0	4	100	0	64	25	0	25	50	1.50
34550711--34550754	2	22.0	2	90	0	70	45	0	4	50	1.22
34550711--34550754	18	2.4	18	100	0	88	45	0	4	50	1.22
34551498--34551581	34	2.5	34	80	7	91	40	17	10	30	1.84
34551784--34552365	290	2.0	289	93	0	984	41	11	10	35	1.76
34553325--34553639	161	2.0	161	85	3	429	42	15	9	32	1.79
34561280--34561351	12	5.6	12	74	18	56	20	2	27	48	1.63
34561316--34561392	25	3.1	23	78	10	73	20	9	22	48	1.77
34561331--34561395	13	5.2	13	81	7	71	26	9	18	46	1.79
34561331--34561395	25	2.6	25	82	0	85	26	9	18	46	1.79
34566135--34566164	2	15.0	2	100	0	60	50	0	0	50	1.00
34566863--34566906	18	2.2	22	77	22	53	54	2	18	25	1.55
34569225--34569634	21	19.5	20	66	17	106	53	6	4	35	1.45
34569352--34569650	63	4.8	62	74	6	208	51	6	6	36	1.52
34569456--34569635	64	2.9	64	75	13	151	53	5	6	35	1.49
34569461--34569634	21	8.3	21	73	11	115	52	5	6	35	1.49
34577771--34577795	5	5.0	5	100	0	50	80	0	0	20	0.72
34585637--34585665	14	2.1	14	93	6	51	6	6	17	68	1.34
34587775--34587829	28	1.9	29	81	3	67	49	0	3	47	1.19
34587908--34587958	18	3.0	17	72	16	52	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34587915--34587962	12	3.9	12	82	12	62	35	0	0	64	0.94
34587933--34587981	12	4.0	12	86	5	53	40	2	0	57	1.10
34587914--34587969	25	2.2	25	78	12	62	35	1	0	62	1.06
34589325--34589359	1	35.0	1	88	0	52	94	5	0	0	0.32
34589323--34589357	18	1.9	18	100	0	70	91	8	0	0	0.42
34589325--34589363	20	2.0	20	100	0	78	89	10	0	0	0.48
34589452--34589477	4	6.5	4	100	0	52	76	0	0	23	0.78
34599245--34599284	18	2.2	18	90	0	62	35	27	7	30	1.84
34602380--34602597	48	4.5	48	79	8	219	26	10	20	43	1.84
34602611--34602700	43	2.1	43	83	6	110	30	15	15	38	1.89
34602583--34602700	44	2.7	43	79	7	114	29	13	16	40	1.86
34602774--34602894	49	2.4	49	81	8	136	29	13	13	43	1.81
34602624--34602841	94	2.3	94	81	2	276	29	13	13	43	1.82
34603336--34603377	21	2.0	21	85	4	57	78	4	2	14	1.01
34606164--34606208	24	1.9	23	86	13	65	44	0	4	51	1.21
34610162--34610193	12	2.4	14	90	10	50	65	0	0	34	0.93
34610408--34610449	12	3.2	13	90	6	59	28	0	2	69	1.01
34612519--34612605	32	2.6	34	82	10	108	33	4	12	49	1.61
34613624--34613659	4	9.2	4	90	6	56	52	2	0	44	1.15
34614043--34614072	2	14.5	2	93	6	51	46	3	0	50	1.18
34614606--34614651	19	2.5	19	86	13	62	28	0	2	69	1.00
34614676--34614726	13	4.5	11	75	18	50	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34614678--34614723	12	3.9	12	80	11	51	58	0	0	41	0.98
34614690--34614723	12	2.7	13	90	4	52	58	0	0	41	0.98
34615166--34615203	2	19.0	2	94	0	67	50	2	0	47	1.15
34615960--34615988	14	2.1	14	100	0	58	51	6	0	41	1.28
34618380--34618424	16	3.0	15	87	6	56	57	0	0	42	0.98
34627142--34627166	13	1.9	13	100	0	50	40	8	12	40	1.72
34630597--34630680	39	2.2	38	81	12	91	42	15	21	20	1.88
34630652--34630760	39	2.8	39	78	0	110	43	23	18	14	1.87
34637391--34637452	29	2.1	29	100	0	124	24	16	16	43	1.87
34656261--34656312	18	2.8	18	72	13	52	55	1	0	42	1.10
34659072--34659137	27	2.4	27	78	16	73	31	0	9	59	1.29
34664914--34664945	2	16.0	2	100	0	64	50	0	50	0	1.00
34666622--34666653	2	16.0	2	100	0	64	0	50	0	50	1.00
34669510--34669540	12	2.6	12	100	0	62	16	0	22	61	1.34
34669717--34669802	25	3.4	25	76	6	84	47	11	23	17	1.80
34673435--34673478	20	2.2	20	83	0	52	40	4	0	54	1.21
34673563--34675223	372	4.5	370	86	2	2244	26	23	30	19	1.98
34673563--34675223	738	2.2	743	87	1	2401	26	23	30	19	1.98
34684266--34684334	25	2.8	25	79	0	93	20	31	8	39	1.83
34684233--34684334	50	2.1	49	86	1	141	19	29	9	41	1.84
34687377--34687410	2	17.0	2	100	0	68	50	0	50	0	1.00
34689087--34689112	2	13.0	2	100	0	52	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34694888--34694953	27	2.4	27	78	16	73	59	9	0	31	1.29
34697709--34697760	18	2.8	18	72	11	52	42	0	1	55	1.10
34703430--34703479	14	3.6	13	81	10	55	62	26	0	12	1.30
34721838--34721958	60	2.0	59	90	1	188	24	18	15	41	1.89
34727884--34727923	16	2.5	16	91	0	71	37	0	20	42	1.52
34753727--34753773	24	2.0	24	91	0	76	36	23	12	27	1.91
34761159--34761193	16	2.3	15	90	5	52	8	2	17	71	1.23
34764433--34764463	3	10.3	3	92	0	53	61	0	0	38	0.96
34771863--34771887	2	12.5	2	100	0	50	0	52	0	48	1.00
34787351--34787468	59	2.0	59	98	1	229	33	26	3	36	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195