genome.fa.s112.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  33  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7290408--7290445	4	9.5	4	100	0	76	76	0	0	23	0.79
7290391--7290445	20	3.0	18	87	10	60	70	0	0	29	0.87
7293609--7293697	42	2.1	42	91	0	142	31	52	4	11	1.57
7294608--7294751	72	2.0	72	95	0	261	22	15	18	43	1.87
7295618--7295700	29	2.9	29	87	0	103	21	12	14	51	1.74
7300704--7300730	2	13.5	2	100	0	54	48	0	51	0	1.00
7303476--7303513	14	2.8	14	84	4	51	47	0	0	52	1.00
7309407--7309445	16	2.4	16	86	4	51	48	5	5	41	1.47
7310624--7310741	60	2.0	58	86	6	166	33	6	6	52	1.54
7310751--7310933	57	3.3	55	79	15	189	43	9	4	42	1.56
7311012--7311040	4	7.5	4	92	7	51	75	0	0	24	0.80
7310996--7311039	19	2.6	16	86	13	54	70	0	0	29	0.88
7312207--7312232	12	2.2	12	100	0	52	23	69	7	0	1.14
7314198--7314222	9	2.8	9	100	0	50	24	68	8	0	1.16
7314209--7314306	42	2.3	42	91	0	151	32	53	4	10	1.54
7315222--7315399	92	1.9	94	91	4	299	24	16	16	41	1.89
7316235--7316303	29	2.3	29	90	5	102	24	10	14	50	1.73
7321291--7321315	2	12.5	2	100	0	50	48	0	52	0	1.00
7330222--7330277	21	2.5	23	81	16	73	48	0	41	10	1.38
7339287--7339487	100	2.0	100	98	0	384	41	7	17	32	1.78
7339418--7339581	82	2.0	82	96	0	301	42	4	17	35	1.69
7341799--7341826	14	2.0	14	100	0	56	57	0	7	35	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7342089--7342130	9	4.6	9	80	14	50	40	2	2	54	1.26
7342353--7342392	12	3.2	12	86	6	62	10	12	0	77	0.99
7342360--7342400	19	2.2	19	86	0	55	7	12	0	80	0.90
7342352--7342394	11	3.6	11	77	17	50	9	16	0	74	1.06
7342870--7342942	23	3.0	23	74	21	60	36	0	0	63	0.95
7343554--7343600	21	2.2	21	84	0	67	8	2	6	82	0.90
7344051--7344106	16	3.4	16	73	9	51	10	7	1	80	0.97
7344590--7344630	11	3.7	11	93	0	73	21	0	26	51	1.48
7344687--7344811	52	2.4	52	86	0	169	37	8	24	30	1.84
7345656--7345697	11	3.8	11	81	12	59	30	0	19	50	1.48
7345722--7345866	52	2.8	52	82	6	161	44	7	21	26	1.79
7351151--7351181	14	2.2	14	100	0	62	12	22	19	45	1.84
7351181--7351231	21	2.4	21	96	0	93	19	19	25	35	1.95
7351485--7351515	16	1.9	16	100	0	62	38	12	9	38	1.77
7352397--7352433	16	2.3	16	90	0	56	78	2	8	10	1.06
7353079--7353211	43	3.1	43	98	1	257	28	25	27	18	1.98
7359039--7359407	184	2.0	184	99	0	729	33	14	18	33	1.91
7359396--7359441	24	1.9	24	100	0	92	32	21	8	36	1.84
7359467--7359542	24	3.2	24	88	3	109	34	11	28	25	1.91
7359839--7359884	18	2.4	19	85	7	58	54	0	0	45	0.99
7359952--7360026	31	2.6	28	82	12	82	45	8	0	46	1.32
7359981--7360038	26	2.3	26	79	8	66	46	5	0	48	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7364666--7364741	30	2.5	31	77	10	77	51	7	0	40	1.31
7364669--7364730	28	2.1	28	82	11	72	51	9	0	38	1.35
7364925--7364988	30	2.1	30	85	5	85	43	12	14	29	1.81
7365409--7365451	20	2.2	20	91	4	70	51	0	0	48	1.00
7365466--7365513	25	1.9	25	91	8	80	56	0	0	43	0.99
7365647--7365694	18	2.7	17	83	6	60	68	0	2	29	1.01
7368566--7368609	14	3.1	14	96	0	79	20	18	27	34	1.96
7376847--7376878	2	16.0	2	100	0	64	0	50	0	50	1.00
7376878--7376912	2	17.5	2	100	0	70	48	0	0	51	1.00
7379546--7379609	25	2.6	25	97	0	119	25	18	17	39	1.92
7387584--7387673	20	4.5	21	76	9	80	52	2	1	44	1.20
7387601--7387673	10	7.2	10	72	18	53	53	1	1	43	1.17
7387616--7387724	21	5.0	21	71	18	80	48	3	0	46	1.26
7387683--7387857	28	6.1	29	76	11	173	42	1	2	53	1.23
7387712--7387750	18	2.2	18	90	0	60	38	2	0	58	1.12
7387615--7387815	46	4.6	44	72	17	145	45	2	1	49	1.28
7387637--7387754	11	12.1	10	68	17	52	43	3	0	52	1.23
7387683--7387854	58	3.0	57	80	7	179	43	1	2	52	1.24
7387686--7387858	86	2.0	86	84	3	222	42	1	2	52	1.26
7387869--7387917	22	2.3	21	89	3	71	48	2	4	44	1.33
7387985--7388038	21	2.3	24	75	21	60	42	5	0	51	1.25
7388005--7388133	43	3.0	44	74	15	128	49	2	1	46	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7388007--7388133	21	6.1	21	80	4	143	49	2	1	46	1.24
7388196--7388253	30	2.0	30	86	3	82	46	1	3	48	1.29
7388220--7388302	39	2.1	39	82	8	98	38	2	3	55	1.30
7388275--7388320	22	2.1	22	88	8	67	36	0	0	63	0.95
7388288--7388340	20	2.5	22	76	11	58	39	0	1	58	1.09
7388272--7388332	30	2.0	31	90	3	97	36	0	1	62	1.05
7388275--7388340	11	6.3	11	72	10	57	37	0	1	60	1.06
7388450--7388530	11	7.5	11	69	12	51	33	3	2	60	1.27
7388511--7388551	18	2.2	19	87	12	59	41	2	0	56	1.13
7388591--7388713	30	4.3	29	75	12	110	41	1	3	53	1.27
7396369--7396420	26	1.9	28	88	7	81	32	0	1	65	1.04
7396606--7396640	11	3.1	11	87	4	52	17	0	2	80	0.84
7396577--7396658	7	11.4	7	69	17	53	18	2	3	75	1.06
7397337--7397397	15	4.3	14	79	8	70	22	0	0	77	0.78
7398539--7398571	14	2.3	15	89	5	50	24	0	0	75	0.80
7399504--7399543	21	1.9	21	84	0	53	62	2	0	35	1.09
7400530--7400571	17	2.3	19	92	8	70	4	9	4	80	0.99
7404403--7404576	61	2.9	62	79	5	160	40	14	2	42	1.60
7405230--7405290	30	2.1	29	82	14	72	59	6	3	31	1.39
7406434--7406480	21	2.3	20	78	14	51	46	2	2	48	1.25
7406562--7406591	10	3.1	10	95	4	53	36	0	0	63	0.95
7408137--7408182	23	2.0	23	91	8	76	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7408213--7408250	20	1.9	20	89	10	60	57	2	2	36	1.26
7409750--7409779	14	2.1	14	93	0	51	36	0	0	63	0.95
7410059--7410120	32	1.9	32	93	0	106	40	3	4	51	1.39
7410106--7410155	26	1.9	26	91	0	82	54	6	2	38	1.37
7410964--7411094	61	2.1	62	82	12	162	40	7	10	41	1.68
7410980--7411095	61	1.9	61	85	7	164	39	6	12	41	1.69
7411097--7411172	38	2.0	39	87	7	111	23	9	13	53	1.67
7414090--7414298	106	2.0	106	96	0	382	28	13	17	40	1.87
7416077--7416118	17	2.5	17	100	0	84	19	11	9	59	1.59
7416271--7416312	17	2.4	18	88	11	61	66	9	9	14	1.44
7417232--7417312	42	1.9	42	85	5	110	27	18	2	51	1.58
7417266--7417364	37	2.8	36	79	13	105	26	17	4	52	1.62
7417708--7417889	40	4.5	40	75	11	165	36	6	17	39	1.75
7417708--7417897	80	2.3	81	82	7	208	37	6	17	37	1.77
7418039--7418091	15	3.6	14	78	14	54	39	18	7	33	1.79
7419075--7419113	14	3.1	14	72	27	50	64	0	0	35	0.94
7427273--7427297	10	2.5	10	100	0	50	12	20	12	56	1.67
7429614--7429640	14	1.9	14	100	0	54	48	0	0	51	1.00
7430003--7430051	19	2.7	18	77	20	57	38	0	2	59	1.09
7430557--7430612	28	2.0	28	93	6	96	67	19	7	5	1.34
7431324--7431414	10	9.2	10	72	11	71	45	3	2	49	1.30
7431325--7431420	29	3.2	29	89	2	138	41	4	2	52	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7431324--7431430	10	10.9	9	73	14	70	41	3	2	52	1.34
7431466--7431499	12	2.8	13	86	13	54	44	0	0	55	0.99
7435313--7435341	2	14.5	2	100	0	58	48	0	0	51	1.00
7437062--7437119	28	2.0	30	83	12	77	41	1	8	48	1.44
7437887--7437944	20	2.8	22	76	10	59	51	8	3	36	1.49
7437933--7437974	22	2.0	22	85	4	59	45	9	7	38	1.64
7438037--7438106	22	3.2	22	74	11	72	55	11	2	30	1.50
7438039--7438149	44	2.5	44	82	5	118	54	9	4	31	1.54
7439907--7439963	19	2.8	19	81	7	60	54	1	3	40	1.28
7439900--7439963	19	3.2	19	77	14	58	53	1	4	40	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195