Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  162  of  195  ( 23297 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27027244--27027399
52
3.0
52
88
2
217
39
9
26
25
1.86
27028186--27028227
11
3.8
11
90
0
66
19
0
30
50
1.48
27028185--27028227
22
2.0
22
95
0
77
20
0
30
48
1.50
27028252--27028408
52
3.0
52
89
1
226
40
9
25
24
1.85
27028990--27029211
117
1.9
117
87
0
327
49
4
7
38
1.52
27032297--27032355
22
2.9
19
83
11
64
76
0
16
6
1.00
27035354--27035585
117
2.0
118
85
3
317
51
6
6
36
1.51
27038866--27038959
46
2.0
46
97
0
179
31
13
18
36
1.90
27038937--27038984
24
2.0
24
95
0
87
27
20
16
35
1.94
27044491--27044525
12
2.9
12
100
0
70
14
0
34
51
1.42
27044491--27044634
14
10.3
14
72
11
57
20
2
28
49
1.60
27044579--27044612
15
2.3
15
94
0
59
26
0
26
47
1.53
27046159--27046199
13
3.4
12
83
16
50
39
0
0
60
0.96
27046156--27046199
20
2.4
18
82
17
56
38
0
0
61
0.96
27046166--27046199
16
2.0
16
88
11
50
38
0
0
61
0.96
27046410--27046551
73
1.9
74
82
1
178
49
16
18
16
1.80
27046592--27046633
22
1.9
22
95
0
75
23
11
30
33
1.91
27046982--27047085
36
2.8
37
77
12
106
54
16
11
17
1.70
27047065--27047272
111
1.9
111
81
4
258
50
17
17
13
1.77
27047055--27047343
111
2.6
112
78
4
255
49
16
18
15
1.80
27047450--27047768
99
3.2
95
74
7
255
35
14
18
31
1.91
27047447--27047768
33
9.8
32
75
5
173
35
14
18
31
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27048045--27048103
23
2.6
23
84
7
77
23
15
25
35
1.94
27048215--27048290
32
2.4
32
78
8
91
27
18
21
32
1.96
27049672--27049696
13
1.9
13
100
0
50
12
8
0
80
0.92
27050358--27050387
15
1.9
16
93
6
53
3
10
0
86
0.67
27050359--27050398
11
3.6
11
83
9
55
5
5
0
90
0.57
27050362--27050399
19
2.0
19
89
0
58
7
5
0
86
0.69
27052056--27052122
4
16.8
4
80
6
73
49
2
22
25
1.64
27064892--27064936
21
2.2
20
88
4
63
22
8
0
68
1.16
27067387--27067443
15
3.8
15
80
13
55
22
8
1
66
1.29
27074493--27074563
36
2.0
36
82
0
88
29
21
8
40
1.82
27074722--27074786
23
2.9
23
81
9
80
30
20
12
36
1.89
27076852--27076903
15
3.5
16
80
15
58
26
1
3
67
1.18
27077007--27077220
97
2.2
97
81
8
249
44
10
7
37
1.68
27078386--27078417
2
16.0
2
100
0
64
50
0
0
50
1.00
27078566--27078591
2
13.0
2
100
0
52
50
0
0
50
1.00
27079152--27079230
11
7.1
11
71
13
54
46
1
6
45
1.36
27080901--27080987
2
43.5
2
85
0
102
44
1
5
48
1.34
27082405--27082551
10
14.8
10
70
9
79
55
6
0
37
1.30
27082515--27082568
21
2.6
21
76
5
56
61
7
0
31
1.24
27082657--27082696
18
2.2
18
86
8
55
57
7
0
35
1.27
27082788--27082822
17
2.1
17
94
0
61
42
0
8
48
1.33
27082858--27082903
21
2.2
21
85
11
60
60
10
0
28
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27083196--27083264
29
2.4
29
78
4
77
31
2
4
60
1.31
27083346--27083381
9
3.9
9
85
7
54
22
0
2
75
0.94
27083353--27083396
17
2.4
18
85
7
54
25
0
6
68
1.14
27083433--27083498
30
2.2
31
86
8
91
48
0
6
45
1.27
27083472--27083524
10
5.3
10
79
6
63
32
1
7
58
1.37
27083449--27083524
20
3.8
20
77
6
66
36
1
7
53
1.38
27083477--27083546
10
6.9
10
75
6
52
28
1
7
62
1.30
27084508--27084543
18
2.0
18
89
10
56
2
19
0
77
0.88
27084508--27084544
19
2.0
19
89
5
58
2
18
0
78
0.87
27084508--27084544
20
1.9
20
88
5
58
2
18
0
78
0.87
27087450--27087569
59
2.0
60
95
1
215
25
11
15
46
1.80
27089613--27089750
50
2.8
50
82
2
161
41
17
12
28
1.86
27091086--27091132
22
2.0
23
88
8
69
38
12
8
40
1.74
27092060--27092099
9
4.3
9
93
6
71
90
0
0
10
0.47
27092060--27092099
19
2.2
19
95
4
73
90
0
0
10
0.47
27093735--27093804
20
3.6
19
80
14
63
74
0
12
12
1.08
27093755--27093803
21
2.4
21
82
3
64
71
0
16
12
1.14
27095182--27095214
2
16.5
2
100
0
66
51
0
0
48
1.00
27095490--27095525
19
1.9
18
88
5
54
38
0
5
55
1.23
27099960--27100021
30
2.1
29
82
8
72
25
1
0
72
0.94
27099999--27100094
45
2.2
42
81
9
104
25
4
4
66
1.27
27100062--27100098
6
6.5
6
96
3
60
27
0
0
72
0.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27103937--27103966
9
3.4
9
95
4
53
20
0
0
80
0.72
27104930--27104991
24
2.7
23
82
9
72
75
6
1
16
1.08
27105420--27105462
22
2.0
22
86
9
61
18
4
4
72
1.20
27110696--27110747
27
1.9
27
88
0
77
50
15
5
28
1.67
27110710--27110765
27
2.1
27
82
0
67
53
12
7
26
1.64
27111830--27111862
3
11.0
3
100
0
66
33
0
0
66
0.92
27113838--27113880
17
2.6
17
82
14
54
83
2
6
6
0.88
27113849--27113914
18
3.6
18
73
16
55
81
4
6
7
0.97
27113871--27113913
16
2.8
15
79
6
59
79
6
6
6
1.07
27114098--27114159
22
2.9
22
68
17
58
56
4
0
38
1.21
27114448--27114495
15
3.4
14
77
11
53
81
2
2
14
0.88
27115011--27115073
31
2.0
31
93
0
108
47
1
4
46
1.33
27117014--27117160
75
2.0
75
93
2
251
28
21
17
33
1.95
27117636--27117704
26
2.6
26
80
13
70
28
1
2
66
1.14
27119702--27119958
125
2.0
125
99
0
505
20
29
33
16
1.94
27121017--27121055
13
3.0
13
80
0
51
48
5
5
41
1.47
27125118--27125229
45
2.6
43
77
8
109
26
11
16
44
1.82
27125516--27125562
10
4.7
10
76
7
51
27
0
4
68
1.08
27125513--27125553
16
2.6
16
80
11
57
29
0
4
65
1.13
27127276--27127332
27
2.1
27
83
6
71
42
17
12
28
1.85
27138895--27138989
30
3.2
30
68
21
92
37
11
6
44
1.66
27139161--27139201
16
2.4
16
84
8
55
51
2
0
46
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27138794--27139363
58
9.8
57
82
10
613
38
11
5
45
1.63
27139434--27139505
6
11.8
6
78
15
69
80
6
1
11
0.96
27139433--27139491
21
2.8
21
77
12
68
81
6
1
10
0.94
27141001--27141162
44
3.6
45
83
2
211
45
17
15
21
1.86
27141181--27141345
41
4.0
41
83
4
217
38
19
18
24
1.93
27141194--27141376
84
2.2
83
86
1
251
41
18
16
24
1.89
27141189--27141376
41
4.6
41
81
4
200
40
18
15
25
1.90
27143194--27143246
25
2.1
25
86
6
72
5
13
0
81
0.86
27147215--27147507
58
4.9
59
87
3
401
40
10
5
44
1.61
27147418--27147459
17
2.4
18
84
11
52
52
0
2
45
1.13
27147418--27147457
18
2.2
18
86
0
53
55
0
2
42
1.13
27147215--27147508
122
2.5
118
83
6
355
40
10
5
43
1.61
27148842--27148904
23
2.7
24
76
14
69
69
6
7
15
1.33
27152914--27152983
6
11.2
6
81
6
77
30
1
2
65
1.15
27152926--27152982
7
8.7
7
84
7
68
28
1
1
68
1.09
27152914--27152983
26
2.8
24
83
12
86
30
1
2
65
1.15
27152935--27152982
19
2.5
19
89
0
78
27
2
2
68
1.11
27154124--27154271
59
2.5
59
83
4
190
20
3
18
57
1.55
27154263--27154317
25
2.2
24
87
9
74
20
0
10
69
1.18
27154623--27154660
18
2.1
18
95
0
67
39
0
7
52
1.31
27154631--27154678
18
2.8
17
84
12
62
39
0
6
54
1.26
27156904--27156933
15
2.0
15
93
0
51
43
23
6
26
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27157515--27157590
25
3.1
25
78
15
72
11
5
3
78
1.04
27157736--27157838
20
5.3
20
79
5
113
35
8
9
45
1.68
27157745--27157838
39
2.4
38
89
1
143
34
8
10
46
1.69
27162438--27162485
24
2.0
24
100
0
96
25
20
16
37
1.93
27163196--27163238
19
2.3
19
84
8
52
25
2
0
72
0.97
27163212--27163236
13
1.9
13
100
0
50
20
0
0
80
0.72
27163454--27163497
16
2.9
15
83
9
54
29
2
0
68
1.02
27163543--27163573
16
1.9
16
93
0
53
70
6
0
22
1.09
27164493--27164533
16
2.6
16
84
7
57
46
12
4
36
1.63
27164560--27164617
21
2.6
22
78
5
64
50
15
5
29
1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195