genome.fa.s112.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  84  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15880363--15880415	26	2.0	26	92	0	88	28	24	18	28	1.98
15880498--15882452	715	2.7	714	89	1	2887	27	24	21	26	2.00
15882556--15882608	26	2.0	26	89	7	81	26	24	20	28	1.99
15881680--15883513	902	2.0	902	88	1	2723	25	25	23	25	2.00
15884105--15884157	26	2.0	26	88	0	79	26	20	20	32	1.98
15883755--15891218	877	8.4	899	84	5	9113	25	24	24	24	2.00
15887668--15887718	25	2.0	26	88	3	77	29	21	19	29	1.98
15892330--15892382	26	2.0	26	88	0	79	30	24	16	28	1.97
15891488--15896581	906	5.7	900	89	2	6938	25	24	23	26	2.00
15896647--15896699	26	2.0	26	89	7	81	28	22	18	30	1.98
15895870--15897280	699	2.0	700	87	3	2057	27	22	22	26	1.99
15896583--15900053	898	4.0	884	86	4	4640	25	24	24	25	2.00
15899998--15902449	903	2.7	902	91	1	3971	26	24	23	25	2.00
15901802--15907113	718	7.5	714	86	4	6943	26	23	23	26	2.00
15907596--15907648	26	2.0	26	89	7	81	28	18	18	33	1.95
15908384--15908432	15	3.0	17	66	22	50	10	28	36	24	1.88
15908366--15908432	32	2.1	32	88	5	100	11	29	34	23	1.91
15910797--15910855	26	2.2	26	81	3	64	57	8	11	22	1.61
15910727--15913671	898	3.3	896	88	2	4241	26	24	23	25	2.00
15913028--15913079	26	2.0	26	84	0	68	26	23	21	28	1.99
15913737--15913789	26	2.0	26	89	7	81	28	22	18	30	1.98
15912960--15914371	700	2.0	700	88	3	2109	27	22	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15918623--15918675	26	2.0	26	96	0	97	28	26	18	26	1.98
15920995--15929667	717	11.9	714	75	9	6877	26	24	23	26	2.00
15923027--15923051	12	2.1	12	100	0	50	0	64	28	8	1.22
15923267--15923296	12	2.5	12	100	0	60	13	30	20	36	1.90
15925319--15925371	26	2.0	26	89	7	81	28	18	18	33	1.95
15926822--15926870	15	3.0	17	66	22	50	10	28	36	24	1.88
15926804--15926870	32	2.1	32	88	5	100	11	29	34	23	1.91
15925493--15929694	714	5.9	715	85	4	5467	26	24	22	26	2.00
15929774--15931269	709	2.1	713	87	2	2154	26	23	23	26	2.00
15932269--15932321	26	2.0	26	88	0	79	26	24	20	28	1.99
15930507--15933031	885	2.8	892	85	5	3413	25	24	24	25	2.00
15932302--15935918	738	5.1	703	84	6	4352	26	24	23	26	2.00
15935127--15935179	26	2.0	26	88	0	79	28	20	20	30	1.98
15936018--15936067	26	2.0	24	92	7	82	30	26	16	28	1.96
15936870--15936922	26	2.0	26	96	0	97	32	26	15	26	1.95
15936087--15938524	885	2.7	887	84	5	3219	26	24	22	25	2.00
15939369--15939419	26	2.0	26	96	0	93	29	23	17	29	1.97
15939957--15940009	26	2.0	26	81	0	61	28	22	18	30	1.98
15940846--15940899	26	2.0	26	85	3	72	29	22	22	25	1.99
15941751--15941803	26	2.0	26	100	0	106	26	26	20	26	1.99
15939794--15949688	898	11.2	891	84	4	11948	25	24	24	25	2.00
15942650--15942702	26	2.0	26	96	0	97	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15946161--15946210	26	1.9	26	91	0	82	24	28	22	26	1.99
15948770--15948822	26	2.0	26	92	0	88	26	22	22	28	1.99
15949484--15949845	159	2.3	158	82	1	429	21	28	27	22	1.99
15953996--15954048	26	2.0	26	92	0	88	26	24	18	30	1.98
15950586--15955837	884	5.9	882	83	7	6029	26	24	23	25	2.00
15954892--15954942	26	2.0	26	92	0	84	29	23	17	29	1.97
15955763--15955814	25	2.0	26	85	3	70	28	26	17	26	1.97
15955664--15956022	184	1.9	185	87	2	526	20	29	28	21	1.98
15955947--15955999	26	2.0	26	96	0	97	30	24	16	28	1.97
15957041--15957072	12	2.7	12	95	0	55	9	28	21	40	1.84
15959229--15959281	26	2.0	26	96	0	97	26	24	20	28	1.99
15959455--15959485	12	2.6	12	100	0	62	12	29	19	38	1.89
15961036--15961087	26	2.0	26	100	0	104	30	23	19	26	1.98
15961925--15961977	26	2.0	26	96	0	97	30	24	16	28	1.97
15958360--15963571	905	5.8	888	85	4	6509	25	25	23	24	2.00
15962925--15964242	709	1.9	710	89	2	2054	27	23	23	26	2.00
15964389--15964440	26	2.0	26	92	0	86	28	26	15	28	1.96
15966001--15966052	26	2.0	26	92	0	86	28	23	15	32	1.95
15966165--15967407	637	2.0	636	88	0	1887	27	23	21	26	1.99
15968282--15968334	26	2.0	26	89	7	81	24	24	22	28	2.00
15970940--15970991	26	2.0	26	92	0	86	25	25	21	28	1.99
15972743--15972795	26	2.0	26	96	0	97	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15973646--15973698	26	2.0	26	100	0	106	26	26	20	26	1.99
15968064--15978855	903	12.1	893	84	5	12975	25	24	24	25	2.00
15975430--15975482	26	2.0	26	92	0	88	26	22	20	30	1.98
15977192--15977244	26	2.0	26	96	0	97	28	26	18	26	1.98
15976366--15978913	888	2.9	883	82	5	3253	25	23	24	26	2.00
15978076--15978133	26	2.2	27	87	6	91	27	25	20	25	1.99
15979671--15979729	26	2.3	26	91	5	95	28	27	20	23	1.99
15979666--15981551	949	2.0	959	85	4	2548	25	25	24	25	2.00
15981525--15981577	26	2.0	26	100	0	106	26	22	20	30	1.98
15984146--15984201	26	2.2	26	96	0	103	26	25	21	26	1.99
15985034--15985086	26	2.0	26	88	0	79	30	24	16	28	1.97
15985934--15985989	26	2.2	26	96	0	103	26	25	21	26	1.99
15983877--15994822	891	12.2	893	73	11	7559	25	25	24	25	2.00
15986831--15986880	26	1.9	26	95	0	91	30	24	18	28	1.97
15988120--15994822	875	7.6	873	83	6	7872	25	24	23	25	2.00
15991465--15994822	896	3.8	892	84	5	4354	25	24	24	25	2.00
15994064--15994114	26	2.0	26	96	0	93	27	27	17	27	1.98
15994796--15994848	26	2.0	26	82	7	63	30	20	20	28	1.98
15994046--15995554	732	2.1	732	87	1	2144	26	23	22	26	2.00
15996555--15996605	26	2.0	26	96	0	93	25	27	17	29	1.98
15994778--15998202	882	3.9	879	83	6	3857	25	24	23	26	2.00
15999059--15999111	26	2.0	26	96	0	97	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16000672--16000724	26	2.0	26	100	0	106	26	26	20	26	1.99
15999770--16003127	876	3.9	866	81	7	3820	26	24	23	25	2.00
16002372--16002424	26	2.0	26	85	0	70	26	22	20	30	1.98
16004565--16004617	26	2.0	26	96	0	97	26	24	20	28	1.99
16005469--16005518	26	1.9	26	91	0	82	30	26	16	28	1.96
16003894--16006293	892	2.7	886	86	4	3270	26	24	23	25	2.00
16006325--16006377	26	2.0	26	96	0	97	28	24	20	26	1.99
16006351--16006789	219	2.0	220	83	2	560	18	24	33	23	1.96
16007435--16007487	26	2.0	26	85	7	72	32	18	18	30	1.96
16007461--16008117	218	3.0	220	88	2	957	19	24	32	23	1.97
16008430--16008482	26	2.0	26	92	0	88	26	22	20	30	1.98
16011156--16011208	26	2.0	26	88	0	79	30	24	20	24	1.99
16009399--16012708	871	3.7	880	81	8	3589	26	24	23	25	2.00
16013926--16013978	26	2.0	26	96	0	97	28	26	18	26	1.98
16014828--16014880	26	2.0	26	100	0	106	26	26	20	26	1.99
16013757--16015542	905	2.0	902	89	0	2703	26	25	23	24	2.00
16015566--16015618	26	2.0	26	88	0	79	28	24	16	30	1.97
16014796--16016259	737	2.0	737	89	1	2225	27	23	22	26	1.99
16016471--16016526	28	2.0	28	93	3	96	25	25	25	25	2.00
16016507--16018125	869	1.8	881	84	6	2214	26	24	24	25	2.00
16018099--16018151	26	2.0	26	96	0	97	26	24	20	28	1.99
16017388--16018871	746	2.0	744	92	1	2497	26	23	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16019004--16019055	26	2.0	26	96	0	95	26	25	21	26	1.99
16020738--16020790	26	2.0	26	82	7	63	32	18	16	32	1.94
16021633--16021685	26	2.0	26	92	0	88	26	22	22	28	1.99
16018096--16023156	892	5.8	880	82	7	5529	26	23	23	25	2.00
16021624--16025688	829	4.8	832	82	7	4690	26	23	23	26	2.00
16025033--16027916	709	4.0	713	87	3	3972	26	24	23	26	2.00
16028945--16028997	26	2.0	26	88	0	79	26	22	20	30	1.98
16027161--16029357	902	2.4	904	91	1	3472	25	24	24	25	2.00
16028970--16030183	409	2.9	405	79	7	1399	22	24	26	27	2.00
16030653--16031470	410	2.0	409	88	1	1199	21	22	27	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195