Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  176  of  195  ( 23297 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29660923--29660998
31
2.5
31
83
10
86
44
6
11
36
1.67
29668642--29669207
58
9.7
56
79
8
377
44
6
13
35
1.69
29668643--29669209
60
9.7
57
78
7
441
44
6
13
35
1.70
29679576--29679677
15
6.2
16
83
13
120
76
0
12
10
1.02
29679574--29679677
8
12.9
8
83
11
124
75
0
13
11
1.06
29680682--29680944
41
6.1
41
86
11
357
24
17
24
34
1.96
29680801--29680907
53
2.0
52
92
5
180
28
15
24
31
1.96
29681241--29681298
22
2.7
21
73
7
62
15
6
3
74
1.17
29683630--29684136
58
8.7
57
82
7
526
43
7
13
35
1.73
29683618--29684136
117
4.4
115
83
6
566
43
7
13
35
1.73
29688783--29689066
138
2.1
138
95
0
514
36
13
15
35
1.86
29694498--29694531
17
1.9
18
88
5
52
76
5
2
14
1.09
29695138--29695167
14
2.1
14
100
0
60
6
30
0
63
1.20
29696419--29696452
16
2.2
16
89
5
52
5
17
5
70
1.28
29696426--29696457
16
2.0
16
93
0
55
6
18
3
71
1.20
29699809--29699882
34
2.1
35
87
7
107
50
9
4
36
1.54
29701957--29701988
16
2.0
16
93
0
55
34
0
3
62
1.11
29705740--29705773
14
2.4
14
90
5
50
50
0
0
50
1.00
29705754--29705793
19
2.1
19
86
9
55
60
0
0
40
0.97
29705837--29705871
18
1.9
18
100
0
70
45
0
14
40
1.45
29705838--29705889
18
2.9
18
88
0
68
48
1
7
42
1.43
29712244--29712279
4
8.8
4
87
6
54
75
2
0
22
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29717234--29717258
9
2.8
9
100
0
50
24
20
8
48
1.76
29717732--29717864
48
2.8
47
75
17
116
33
10
14
42
1.80
29717871--29718300
74
5.8
73
78
5
391
28
8
20
42
1.82
29717871--29718300
37
11.6
36
75
5
142
28
8
20
42
1.82
29717901--29718298
148
2.7
147
85
2
539
27
9
21
41
1.84
29718384--29718478
43
2.2
43
85
5
122
37
11
10
40
1.76
29718743--29718778
12
2.8
13
87
8
56
19
0
8
72
1.10
29718743--29718783
12
3.3
12
86
3
55
19
0
7
73
1.07
29719599--29719656
20
3.0
20
85
9
68
34
6
12
46
1.68
29719289--29719683
216
1.8
217
91
3
661
28
7
11
52
1.64
29719667--29719700
17
2.0
17
88
0
50
29
5
8
55
1.54
29719662--29719802
47
3.0
46
76
8
135
34
2
8
54
1.45
29719684--29719910
24
9.8
24
68
16
129
32
3
9
54
1.52
29719800--29719886
42
2.1
42
84
0
111
31
4
9
55
1.52
29719784--29719937
66
2.4
66
81
4
170
32
4
9
53
1.54
29719904--29719942
18
2.2
18
86
9
53
35
0
10
53
1.35
29719955--29719999
20
2.3
20
84
3
56
37
6
6
48
1.56
29719997--29720086
34
2.6
34
91
0
144
30
5
14
50
1.66
29720009--29720066
17
3.4
17
68
17
57
27
5
15
51
1.64
29720098--29720147
24
2.2
22
85
7
64
32
2
10
56
1.44
29721273--29721311
17
2.3
17
86
8
53
53
0
0
46
1.00
29725579--29725618
9
4.2
9
87
12
62
10
25
10
55
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29725579--29725619
20
2.0
20
100
0
82
9
26
9
53
1.65
29726593--29726730
30
4.6
30
84
8
158
47
0
10
42
1.37
29727597--29727647
25
2.0
25
100
0
102
43
3
11
41
1.60
29729360--29729539
49
3.5
48
74
9
162
42
15
8
33
1.78
29729365--29729539
51
3.4
50
75
8
174
42
15
9
32
1.78
29742069--29742146
31
2.6
29
78
8
84
75
0
7
16
1.02
29742509--29742554
19
2.4
19
77
0
56
28
19
26
26
1.99
29742685--29742734
25
2.0
25
84
7
66
42
18
6
34
1.74
29743169--29743215
11
4.3
11
86
5
51
78
0
14
6
0.93
29743173--29743215
16
2.6
16
88
3
59
79
0
16
4
0.90
29743371--29743432
7
8.6
7
91
8
90
0
0
11
88
0.51
29743371--29743435
1
65.0
1
78
0
67
0
0
10
89
0.49
29743374--29743433
8
7.9
8
96
3
99
0
0
11
88
0.52
29743371--29743433
14
4.3
15
92
8
103
0
0
11
88
0.50
29743442--29743814
41
9.0
41
87
9
508
36
22
19
21
1.95
29745043--29745092
16
2.9
16
78
16
55
4
12
0
84
0.76
29745045--29745092
9
5.3
9
85
7
62
4
10
0
85
0.73
29746411--29746476
6
11.2
6
75
15
66
78
0
19
1
0.82
29746398--29746476
26
3.0
26
74
17
72
75
0
22
1
0.87
29760548--29761344
276
3.0
272
92
3
1344
44
11
7
36
1.69
29762319--29762344
2
13.0
2
100
0
52
50
0
0
50
1.00
29765248--29765626
61
6.3
61
83
8
463
36
10
5
47
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29765248--29765622
120
3.1
118
82
7
441
35
10
5
47
1.62
29765248--29765626
181
2.1
181
85
5
507
36
10
5
47
1.62
29766539--29766571
15
2.1
16
94
5
59
78
0
0
21
0.75
29766592--29766622
7
4.6
7
92
8
55
87
0
0
12
0.55
29766592--29766622
13
2.3
13
94
5
53
87
0
0
12
0.55
29766823--29767011
42
4.5
41
82
7
202
39
15
15
29
1.89
29775245--29775279
15
2.3
15
85
0
52
54
0
20
25
1.45
29776513--29776635
16
8.3
15
69
19
62
21
1
30
46
1.61
29776593--29776644
14
3.6
14
77
10
50
23
0
30
46
1.53
29776662--29776723
16
3.9
16
85
6
81
17
0
32
50
1.47
29777826--29777856
8
3.9
8
95
0
53
0
0
16
83
0.64
29780249--29780280
4
8.0
4
92
0
55
71
3
0
25
1.00
29781412--29781502
27
3.2
27
67
14
67
34
15
5
45
1.69
29781300--29781715
60
7.0
59
78
9
386
38
11
4
45
1.61
29781346--29781713
119
3.1
117
83
9
413
38
10
4
47
1.58
29781345--29781715
60
6.2
59
81
9
389
38
11
4
46
1.58
29781566--29781604
16
2.4
16
82
0
51
46
0
2
51
1.14
29782626--29782658
15
2.1
16
94
5
59
78
0
0
21
0.75
29787774--29787953
93
1.9
93
96
0
333
47
12
11
29
1.75
29796197--29796363
84
2.0
84
95
1
300
43
10
14
31
1.80
29797249--29797335
31
2.8
31
76
10
88
79
0
3
17
0.87
29797250--29797318
24
3.0
23
76
4
75
79
0
2
17
0.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29797251--29797309
7
7.9
7
83
12
64
77
0
3
18
0.90
29797267--29797338
16
4.5
16
73
11
67
77
0
2
19
0.88
29797674--29797716
21
2.0
22
86
8
63
51
20
2
25
1.60
29798120--29798221
3
34.3
3
75
16
88
63
4
1
29
1.26
29798118--29798221
17
5.7
17
76
15
84
64
4
1
28
1.25
29798115--29798230
20
6.0
19
74
16
96
63
5
1
29
1.25
29798525--29798570
22
2.0
22
83
8
56
21
10
4
63
1.44
29798709--29800125
469
3.0
472
95
2
2562
36
14
9
39
1.78
29803221--29803263
20
2.0
22
86
8
63
48
4
0
46
1.22
29803800--29803827
14
2.0
14
100
0
56
57
0
0
42
0.99
29805318--29805401
19
4.3
19
79
8
80
63
5
0
30
1.19
29805329--29805412
10
8.7
10
75
12
68
59
7
0
33
1.25
29805321--29805478
9
17.0
9
70
21
53
62
5
1
31
1.25
29805490--29805566
38
2.0
38
85
5
102
58
9
2
29
1.42
29805613--29805716
38
2.7
36
80
11
118
50
4
2
41
1.38
29805631--29805709
19
4.2
18
77
7
77
50
3
2
43
1.33
29805622--29805716
19
4.9
19
71
15
70
49
4
3
43
1.38
29805805--29805841
11
3.3
11
85
7
56
78
2
0
18
0.87
29805804--29805843
12
3.4
12
79
6
55
77
2
0
20
0.88
29805865--29805942
40
2.0
40
82
5
95
46
2
2
48
1.29
29805947--29805991
19
2.3
19
84
7
54
33
4
8
53
1.52
29808992--29809074
21
3.9
21
71
12
62
51
19
0
28
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29821779--29821838
31
1.9
31
86
0
84
43
11
3
41
1.57
29821790--29821869
31
2.6
30
84
4
97
42
10
6
41
1.63
29821976--29822051
29
2.9
25
78
13
73
43
3
0
52
1.19
29822207--29822249
20
2.1
21
87
12
63
65
0
4
30
1.13
29824486--29824535
20
2.5
20
96
0
91
52
10
6
32
1.59
29826600--29826675
37
2.1
37
97
0
143
31
18
23
26
1.97
29828719--29828773
26
2.1
26
93
0
92
23
29
12
34
1.92
29828846--29828879
8
4.2
8
88
0
50
61
23
0
14
1.33
29830584--29830610
14
1.9
14
100
0
54
18
0
7
74
1.05
29830742--29830844
14
7.6
14
67
19
58
50
0
0
48
1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195